Lsi11G013240.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G013240.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	HTH myb-type domain-containing protein
Location	chr11: 21860852 .. 21865340 (+)
Sequence length	2366
RNA-Seq Expression	Lsi11G013240.1
Synteny	Lsi11G013240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCCTACAAATTTCCCTATTATTCAAAAATGAACATCAAAGTTTAAATTGTTTTCTTGAATCCAGATTATCACTTATTTTTCTGTGTAGAGAACAAAATTTCCAGGGAAAACCGAATTGTTCTTCATCTCGAATGGAGAAACAATTTGGGTCGTTCTCAAATTATGTGTTGATTGAGCACTGAAGATTCTGTAAATTTAGGGTTCGTACTTGCCCCGGAAGAAGATGAGGATCAAGAATCGCCGCGGCGGAAGGCCCAAGCCTTCCCTGCGTTCCGCTGCTTCTTATCCGTCGCCTATGGCGTCTCCGCCCTTTCCCGTCCAGGTTCGTATTCTCTTCTCTTTCCTTATAGAAATGAAGCCATTTCCTTTTTCTTCTCGCAAACCTACGTTGTTTCATTGCGCTATTGCTTTTCGTGACTGAAACTGTGATCCACGATGACACCATTTGTTACTTTCTTGGAATTTTCTGAGAACACGTTGATAGACTAATTTTTAGTTTCAACTAGATTTTGTTCTTTACAAATTCGAAGAAAGGGAAGAGATTGTTTGTTGAAAGTTTCTTTGCTGAAAAATTGATGGGTTTGTATCTGGTTAGGATGTGCCGAATGCAGAAGACAATACTTTGCATGAGGCATCAAGTAAGGAAACTAACGATGTGTTGGATAAGATAGATTGCTTTCAGAAAGACACTTGTACTAGATGCGACCAGAGTGGGGACTTATTGGTTTGTAATGAAATTGGGTGTCCAATTGCCCTTCATGAGTTATGTATGTCCTGTGAGCCTTCCTTCGATGAAGATGGACGATTCTATTGTCCTTATTGTTCATATAAAAGGGCTTTACTTCGTGTGAATGAGTTGAGGAGAAAGACTATGGTGGCAAAGAGAGCGTTATCTGATTTCATCGATACCAGGATGGTTGGTGGTGGAAATTCGCCACAGATAGGAGAGGCAGGTAAGAAGAAAGCAGATGATGTCTTGACTTGTGGAGTGGATTTGGACCTGCCTAATCATGGGAGTCATTTGGGCAATGAGAGTTCGGGAGATCAGGATATGCAGGTCGAGCAAAATCAGAGTAATGAAGGGGAGGACCGTGTGAGAACAGAAGGAGATGTTCAACCAACGTCAATGGTGGGGGTTAACAGCGATAATCATGATGGTCCTATTGTGTCTAATGTTAGCAACGGCAGTCATTCAACTCCTGTAGTTCAGCCATGTGAGGATTCTATGAATGAAGAAACTCATGAGGCTGATGGAACACATCAGGTTGAAAGTTTAGAAAATAAAGAAGATGGGAAAACGATGAACGAAGAAAACTTAAGGTCTACAGATGACATTCAGGATGATGAGATTGCAAAGGATCAAGGACAACTGGAGACTCCAGGTGCACATCATGATGAGGAAGAGACTGCTCGAGAACCTCAAGACAAAGCTGATGGTGGAGAAAAAATCCAAACTGACAACAAAAGGATGCTCGAAGATATCGTTCTTGCATCTGGAAATAAGGATTTGAAGAATGAAACAATTGTGAAAAAAAAGCGCTTTAAAACTAAAGCTAATAGGAGAACAGACTTACAGAATGTCAATTCTCCTAGAAAGTCATTGCGTCTACAAACTCCAGATCCTGGCAAAAAGTCCCCTCATATACAAACTCCAGAACCTAGGAAAAAGTCACCTCATTTACAAACTCCAAAACCTTGGAAAGATCATGCAACCAAAATTGAGGAAGTTTCTGTATCCAGGAATTTAAAGCTGCAACCAGCATCTCCTAGTCAATTGTAAGTTCTTTCAAGGCTATCATTCAATTTCTATATTACTGGATTGCAGTACATTGGTGGGCATCTTTCAGCAGTTTCTGATCATCAAAAGTAATTACAACTAACCGTCCTTTCCCAATTTGCAGCAAAAACTTGGATTTTCATAGTGGGAAGCGTAAGAGAATGCGTTGGTCTGTTGAAGAGGAGGAAATGTTGAAGGTATCTAGTTGATTAGTTGATCAATTAAGATGTTTTGGGCTTGGCATCTTTAATTTTTCCAGTTGTTGTTGGTTTTTCTTTTCCTTCAAATCTTGGTCGCAAAATAATTAGATCATGCAGAAGGGAAGAAAAAGATAATAAAATGAAATCATGGAATAAGCATAACAATCTCTTGTAACTACCACCATTTGCTTAATATTGAAATAACAATAAAACATACTAGTCTTGCAGTGATAGTATGAAATATTACATTTGCTTAATATTGAAATAACAATAAAACATACTAGTCTTGCAGTGATAGTATGAAATATTACAAAAGGGGGAGAAAAATCACACCCCTATGAGGATATGCTTATATTTTAACGCATCTGTCGTGATTCTTAGGATGGAAAACTGAGTTTACATCTGAGTGTTAGCAAAGCTGGTTGAAATGACCTACTGTGTAGATAAGTTTTATTATGATTTCTCTTACATTCTTTTTAACTGAAAAATCCAGGTAGTGTTGCATATAATACTTAAAAGGATTCTCAAGTTCATGCTGCTTCATTTTTAGTTGGCACTCAATTCATTTGTGTCATTTACTTATATCTGTGAACCCTTCATCAAATTTGCATTGAAGATACAGTTGATTGTGCTTTCCGCTCTTTTTTTACCCCTTTAACCATTATTGTCTTTCTTCTCTAATCCCTAGTTGGAGATCTTCCAATGTAACTCACCTTATGGTGTCTGGGAGTCTATTAGTTCCCTTCATTTCATTCATCAATGAAATTGTTTCTCATCTCAGAAAAGGAATATATGTTGTGTGTGACCCGTTTATCTTCTTTAGTGGAGCTAAAAACTAACCAATATTGGTCATGAGAAGAAATGGCCCAATACTACGTTTTTTTTTTCTTAATCATTACTTGCTTCTCCCTGTGCTTACTGAAATTACTTTTTCAGGAAGGAGTTCAGAAATTCTCTTCTACAGCAAATAAAAATCTACCTTGGAGGAAAATTTTGGAATTTGGTCGTCACATATTTGATAACACACGTACTCCAGTTGACCTGAAAGATAAATGGAGAAACCTCCTAGCCAAATAGTCTGCTCAATGGATAACTAGTCCAAAAGATTGCAAAAAGGTAACTTCAATAGTGTCAATAGCAAGTTTTTGGTAACTCCTAAACCTTAATAACAAGTTTATGAAAATTTTGGAATTCGGTCGTCACATATATTTGATGACACTCTTACTCCAGTTAATTTGAAAGATAAATGGAGAAACGTTCTAGCCATATAGTCTATTTTGCTTACTATCCTTATATGTGCTCGAAGTTCAGTATGAACGTATAACTCGATGTTTTGCATTTGCACGATCCAACGATCCACCCCTTAGAAAATTAATAGGTTTAATTTGGTTATCATACTTTCAAAATACTTATTTTGGTTCATGTAGTTTCTGTTTTTGTTATTTTGTTATATTTTGAAATGATCACTTTAGTCCTTGTTTTTAAATTTAAACAAAAAGTCTATGTACATGATACAATAAAATCTGTAACAATATCTTAAGAAATTTTTGTAGGGTAGTGTTTGTTGAATTTGTGATAGGAAAAATGAGACAGTAAACAAATGGACCAAAACAATCATTTCTTTTATAAAGTATAGGGATCAATAAATGTTTCAAAAGTATGGAGACTTAAATTAAACAAAAGTTTAAATTACAAAATCAAGATTAGATGTTTAAAAGGTACAAGGGCTAGAATAAGATTTGAACCGAATGAAATGTGTCAGAGTTTATTTGAAATTTCTTTTTAAGTGCTTAAAAGTATTTTTTTTTCACCCAAAAGTACTTTTTTAAAAAATTATATATTTAAAAGTTCATTTCAAACAAGCTCTTAGTCTGAAAAGAATTTAAACCACATTTTTCGCAGGTACGTTCATGACGCGGAGCCATTCTGTTGATGAAGAAATCTACCTGCTAAAAGAGAGAGGAAAGAAGAAAAAGGGAATGCACAAACAGTTTGTCTTGAAGACTCTGATTTGTAATGGAAGCTATAGAAGCTATTCTAGAGATAAGGTTGATGAAGGCTGTACAGCTCCTTTTGTTGGTCTGTTAATGATGGGCAGTTGGGGAAGAACACTATGATTACCCAAGTCTCTCTCTGTGTTCCATTTAAATCCTTTTTAGTAGTTTGTAGATGAGGTTCTCCAATTTTGGTCTCTTGGTGTAGGTTGGTTTTGTTTGAGTATGCAGAACCGGCAAAACGAGTATAGTTCAGTTGGCACCAAATATGTATTATCAACTTCGATGTTAGAAGTTCAATTTTCCCATTTCACATATTGTCTTAAAAAAAGGTATGCAGAGTCGTTGATCAAACTCTCCCATCGGAGGAGCACAAAAGTTGCCGTATCGATGTTTGCTTGACAATGATATTTGGTTCTCATAAGTTATGTTCGTAACAAATTACATTTTACACAAGTTATGTTGTAACAAATTACGTTTTATGTAAATATAGATTAGTTAATTTGTGTCGTTTTG

mRNA sequence

CGGCCTACAAATTTCCCTATTATTCAAAAATGAACATCAAAGTTTAAATTGTTTTCTTGAATCCAGATTATCACTTATTTTTCTGTGTAGAGAACAAAATTTCCAGGGAAAACCGAATTGTTCTTCATCTCGAATGGAGAAACAATTTGGGTCGTTCTCAAATTATGTGTTGATTGAGCACTGAAGATTCTGTAAATTTAGGGTTCGTACTTGCCCCGGAAGAAGATGAGGATCAAGAATCGCCGCGGCGGAAGGCCCAAGCCTTCCCTGCGTTCCGCTGCTTCTTATCCGTCGCCTATGGCGTCTCCGCCCTTTCCCGTCCAGGATGTGCCGAATGCAGAAGACAATACTTTGCATGAGGCATCAAGTAAGGAAACTAACGATGTGTTGGATAAGATAGATTGCTTTCAGAAAGACACTTGTACTAGATGCGACCAGAGTGGGGACTTATTGGTTTGTAATGAAATTGGGTGTCCAATTGCCCTTCATGAGTTATGTATGTCCTGTGAGCCTTCCTTCGATGAAGATGGACGATTCTATTGTCCTTATTGTTCATATAAAAGGGCTTTACTTCGTGTGAATGAGTTGAGGAGAAAGACTATGGTGGCAAAGAGAGCGTTATCTGATTTCATCGATACCAGGATGGTTGGTGGTGGAAATTCGCCACAGATAGGAGAGGCAGGTAAGAAGAAAGCAGATGATGTCTTGACTTGTGGAGTGGATTTGGACCTGCCTAATCATGGGAGTCATTTGGGCAATGAGAGTTCGGGAGATCAGGATATGCAGGTCGAGCAAAATCAGAGTAATGAAGGGGAGGACCGTGTGAGAACAGAAGGAGATGTTCAACCAACGTCAATGGTGGGGGTTAACAGCGATAATCATGATGGTCCTATTGTGTCTAATGTTAGCAACGGCAGTCATTCAACTCCTGTAGTTCAGCCATGTGAGGATTCTATGAATGAAGAAACTCATGAGGCTGATGGAACACATCAGGTTGAAAGTTTAGAAAATAAAGAAGATGGGAAAACGATGAACGAAGAAAACTTAAGGTCTACAGATGACATTCAGGATGATGAGATTGCAAAGGATCAAGGACAACTGGAGACTCCAGGTGCACATCATGATGAGGAAGAGACTGCTCGAGAACCTCAAGACAAAGCTGATGGTGGAGAAAAAATCCAAACTGACAACAAAAGGATGCTCGAAGATATCGTTCTTGCATCTGGAAATAAGGATTTGAAGAATGAAACAATTGTGAAAAAAAAGCGCTTTAAAACTAAAGCTAATAGGAGAACAGACTTACAGAATGTCAATTCTCCTAGAAAGTCATTGCGTCTACAAACTCCAGATCCTGGCAAAAAGTCCCCTCATATACAAACTCCAGAACCTAGGAAAAAGTCACCTCATTTACAAACTCCAAAACCTTGGAAAGATCATGCAACCAAAATTGAGGAAGTTTCTGTATCCAGGAATTTAAAGCTGCAACCAGCATCTCCTAGTCAATTCAAAAACTTGGATTTTCATAGTGGGAAGCGTAAGAGAATGCGTTGGTCTGTTGAAGAGGAGGAAATGTTGAAGGAAGGAGTTCAGAAATTCTCTTCTACAGCAAATAAAAATCTACCTTGGAGGAAAATTTTGGAATTTGGTCGTCACATATTTGATAACACACGTACTCCAGTTGACCTGAAAGATAAATGGAGAAACCTCCTAGCCAAATAGTCTGCTCAATGGATAACTAGTCCAAAAGATTGCAAAAAGGTACGTTCATGACGCGGAGCCATTCTGTTGATGAAGAAATCTACCTGCTAAAAGAGAGAGGAAAGAAGAAAAAGGGAATGCACAAACAGTTTGTCTTGAAGACTCTGATTTGTAATGGAAGCTATAGAAGCTATTCTAGAGATAAGGTTGATGAAGGCTGTACAGCTCCTTTTGTTGGTCTGTTAATGATGGGCAGTTGGGGAAGAACACTATGATTACCCAAGTCTCTCTCTGTGTTCCATTTAAATCCTTTTTAGTAGTTTGTAGATGAGGTTCTCCAATTTTGGTCTCTTGGTGTAGGTTGGTTTTGTTTGAGTATGCAGAACCGGCAAAACGAGTATAGTTCAGTTGGCACCAAATATGTATTATCAACTTCGATGTTAGAAGTTCAATTTTCCCATTTCACATATTGTCTTAAAAAAAGGTATGCAGAGTCGTTGATCAAACTCTCCCATCGGAGGAGCACAAAAGTTGCCGTATCGATGTTTGCTTGACAATGATATTTGGTTCTCATAAGTTATGTTCGTAACAAATTACATTTTACACAAGTTATGTTGTAACAAATTACGTTTTATGTAAATATAGATTAGTTAATTTGTGTCGTTTTG

Coding sequence (CDS)

ATGAGGATCAAGAATCGCCGCGGCGGAAGGCCCAAGCCTTCCCTGCGTTCCGCTGCTTCTTATCCGTCGCCTATGGCGTCTCCGCCCTTTCCCGTCCAGGATGTGCCGAATGCAGAAGACAATACTTTGCATGAGGCATCAAGTAAGGAAACTAACGATGTGTTGGATAAGATAGATTGCTTTCAGAAAGACACTTGTACTAGATGCGACCAGAGTGGGGACTTATTGGTTTGTAATGAAATTGGGTGTCCAATTGCCCTTCATGAGTTATGTATGTCCTGTGAGCCTTCCTTCGATGAAGATGGACGATTCTATTGTCCTTATTGTTCATATAAAAGGGCTTTACTTCGTGTGAATGAGTTGAGGAGAAAGACTATGGTGGCAAAGAGAGCGTTATCTGATTTCATCGATACCAGGATGGTTGGTGGTGGAAATTCGCCACAGATAGGAGAGGCAGGTAAGAAGAAAGCAGATGATGTCTTGACTTGTGGAGTGGATTTGGACCTGCCTAATCATGGGAGTCATTTGGGCAATGAGAGTTCGGGAGATCAGGATATGCAGGTCGAGCAAAATCAGAGTAATGAAGGGGAGGACCGTGTGAGAACAGAAGGAGATGTTCAACCAACGTCAATGGTGGGGGTTAACAGCGATAATCATGATGGTCCTATTGTGTCTAATGTTAGCAACGGCAGTCATTCAACTCCTGTAGTTCAGCCATGTGAGGATTCTATGAATGAAGAAACTCATGAGGCTGATGGAACACATCAGGTTGAAAGTTTAGAAAATAAAGAAGATGGGAAAACGATGAACGAAGAAAACTTAAGGTCTACAGATGACATTCAGGATGATGAGATTGCAAAGGATCAAGGACAACTGGAGACTCCAGGTGCACATCATGATGAGGAAGAGACTGCTCGAGAACCTCAAGACAAAGCTGATGGTGGAGAAAAAATCCAAACTGACAACAAAAGGATGCTCGAAGATATCGTTCTTGCATCTGGAAATAAGGATTTGAAGAATGAAACAATTGTGAAAAAAAAGCGCTTTAAAACTAAAGCTAATAGGAGAACAGACTTACAGAATGTCAATTCTCCTAGAAAGTCATTGCGTCTACAAACTCCAGATCCTGGCAAAAAGTCCCCTCATATACAAACTCCAGAACCTAGGAAAAAGTCACCTCATTTACAAACTCCAAAACCTTGGAAAGATCATGCAACCAAAATTGAGGAAGTTTCTGTATCCAGGAATTTAAAGCTGCAACCAGCATCTCCTAGTCAATTCAAAAACTTGGATTTTCATAGTGGGAAGCGTAAGAGAATGCGTTGGTCTGTTGAAGAGGAGGAAATGTTGAAGGAAGGAGTTCAGAAATTCTCTTCTACAGCAAATAAAAATCTACCTTGGAGGAAAATTTTGGAATTTGGTCGTCACATATTTGATAACACACGTACTCCAGTTGACCTGAAAGATAAATGGAGAAACCTCCTAGCCAAATAG

Protein sequence

MRIKNRRGGRPKPSLRSAASYPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKIDCFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVNELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNESSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQPCEDSMNEETHEADGTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGAHHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRTDLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNLKLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPWRKILEFGRHIFDNTRTPVDLKDKWRNLLAK

Homology

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BLAST of Lsi11G013240.1 vs. ExPASy Swiss-Prot
Match: P70371 (Telomeric repeat-binding factor 1 OS=Mus musculus OX=10090 GN=Terf1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-04
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 431 DFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPWRKILEFGRHIFDNTRTPVDLKDK 490
           D  SG+RKR  W  EE+ +LK GV+K+         W KIL    H   N RT V LKD+
Sbjct: 359 DDKSGRRKRQTWLWEEDRILKCGVKKYGEG-----NWAKILS---HYKFNNRTSVMLKDR 414

Query: 491 WRNL 495
           WR +
Sbjct: 419 WRTM 414

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BLAST of Lsi11G013240.1 vs. ExPASy TrEMBL
Match: A0A1S3CHE7 (protein CHROMATIN REMODELING 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500488 PE=4 SV=1)

HSP 1 Score: 797.3 bits (2058), Expect = 3.5e-227
Identity = 413/500 (82.60%), Postives = 448/500 (89.60%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAAS-YPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKID 60
           MRIKNRRGGR KPS  SA S  PSPMASPP P QDVPN EDN L EAS+KETNDVLDKID
Sbjct: 1   MRIKNRRGGRCKPSRPSATSTTPSPMASPPLPDQDVPNVEDNALQEASNKETNDVLDKID 60

Query: 61  CFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVN 120
           CFQKD+CTRCDQSGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVN
Sbjct: 61  CFQKDSCTRCDQSGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVN 120

Query: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNE 180
           ELRRKTMVAKRALSDFIDTRMVGGGNSP++GEAGKKK+DD+ TCGVD+DLPN+GSHL NE
Sbjct: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPRMGEAGKKKSDDISTCGVDVDLPNYGSHLCNE 180

Query: 181 SSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQP 240
           SS DQD+QVEQNQSNEGE+  R EGDVQPTSMVGVNS+ HDGPIVSNVSN SHS PVVQP
Sbjct: 181 SSRDQDIQVEQNQSNEGENFARAEGDVQPTSMVGVNSEIHDGPIVSNVSNDSHSAPVVQP 240

Query: 241 CEDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGA 300
           CED M+EETHEA+  GTHQVESLE+K+DGKTM+EE LR  DDIQDD IA+DQGQLE PGA
Sbjct: 241 CEDKMDEETHEAETSGTHQVESLEDKDDGKTMDEEILRPIDDIQDDRIAEDQGQLEIPGA 300

Query: 301 HHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRT 360
           +HD EETA+EPQDK DG E+IQ DN+RMLE+I+ AS + DLKNET  KK+RFKTKANRRT
Sbjct: 301 YHDGEETAQEPQDKDDGREQIQPDNERMLENIIPASVDNDLKNETTAKKRRFKTKANRRT 360

Query: 361 DLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNL 420
           DLQNVNSPRKSLRLQTP+  KKSP I+TPEPR  SPH+QTPKP KDHA KIE+VSVSRNL
Sbjct: 361 DLQNVNSPRKSLRLQTPEV-KKSPRIRTPEPRNNSPHIQTPKPQKDHAIKIEKVSVSRNL 420

Query: 421 KLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPWRKILEFGRHI 480
           K Q AS + FK+LDFH GKRKRMRWSVEEEEML+EGVQKFSSTANKNLPWRKILEFGRHI
Sbjct: 421 KPQSASHNHFKSLDFHGGKRKRMRWSVEEEEMLREGVQKFSSTANKNLPWRKILEFGRHI 480

Query: 481 FDNTRTPVDLKDKWRNLLAK 498
           FD+TRTPVDLKDKWRNLL +
Sbjct: 481 FDDTRTPVDLKDKWRNLLGR 499

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BLAST of Lsi11G013240.1 vs. ExPASy TrEMBL
Match: A0A0A0K518 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G030500 PE=4 SV=1)

HSP 1 Score: 778.5 bits (2009), Expect = 1.7e-221
Identity = 405/510 (79.41%), Postives = 442/510 (86.67%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAASYPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKIDC 60
           MRIK RRGGR KPS RS  S PSPMAS P P QDVPN EDNTLH+AS+KET+DVLDKIDC
Sbjct: 1   MRIKTRRGGRCKPSRRSVTSTPSPMASSPLPDQDVPNVEDNTLHDASNKETDDVLDKIDC 60

Query: 61  FQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVNE 120
           FQKDTCTRCD+SGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVNE
Sbjct: 61  FQKDTCTRCDESGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVNE 120

Query: 121 LRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNES 180
           LRRKTMVAKRALSDFIDTRMVGG NSP++GEAGKKK+DDV TCG D++LPNHGSHL NES
Sbjct: 121 LRRKTMVAKRALSDFIDTRMVGGDNSPRMGEAGKKKSDDVSTCGGDVNLPNHGSHLCNES 180

Query: 181 SGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQPC 240
           S D D+QVEQNQSNEGEDR R  GDV+PTSMVGVNS+ HDGPIVSNVSN SHS P VQPC
Sbjct: 181 SRDHDIQVEQNQSNEGEDRARAGGDVEPTSMVGVNSEIHDGPIVSNVSNSSHSAPTVQPC 240

Query: 241 EDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGAH 300
           ED M+EETHEA+  GTHQVESLE+KEDG TM++E LR  DDIQDD IA D GQLETPGA+
Sbjct: 241 EDRMDEETHEAETSGTHQVESLEDKEDGITMDKEILRPIDDIQDDRIAMDHGQLETPGAY 300

Query: 301 HDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRTD 360
           H  E TA+E Q+K  G E+IQ DN++MLE+IV ASGN DLKN+T VKK+RFKTKANRRTD
Sbjct: 301 HYGEATAQELQEKDGGREQIQPDNEKMLENIVPASGNNDLKNKTTVKKRRFKTKANRRTD 360

Query: 361 LQNVNSPRKSLRLQ-----------TPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATK 420
           LQNVNSPRKSLRLQ           TP+P +KSPHIQTPEPRK SP LQTPKP KD+  K
Sbjct: 361 LQNVNSPRKSLRLQTPEEKKSPRIRTPEPRRKSPHIQTPEPRKNSPRLQTPKPQKDNTIK 420

Query: 421 IEEVSVSRNLKLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPW 480
           IE+VSVSRNLK QPAS +Q K+LDFHSGKRKRMRWSVEEEEMLKEGV+KFSST NKNLPW
Sbjct: 421 IEKVSVSRNLKPQPASHNQLKSLDFHSGKRKRMRWSVEEEEMLKEGVRKFSSTTNKNLPW 480

Query: 481 RKILEFGRHIFDNTRTPVDLKDKWRNLLAK 498
           RKILEFGRHIFD+TRTPVDLKDKWR+LL +
Sbjct: 481 RKILEFGRHIFDDTRTPVDLKDKWRSLLGR 510

[Close]

BLAST of Lsi11G013240.1 vs. ExPASy TrEMBL
Match: A0A1S3CFV4 (protein CHROMATIN REMODELING 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500488 PE=4 SV=1)

HSP 1 Score: 772.7 bits (1994), Expect = 9.3e-220
Identity = 405/500 (81.00%), Postives = 440/500 (88.00%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAAS-YPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKID 60
           MRIKNRRGGR KPS  SA S  PSPMASPP P Q           EAS+KETNDVLDKID
Sbjct: 1   MRIKNRRGGRCKPSRPSATSTTPSPMASPPLPDQ-----------EASNKETNDVLDKID 60

Query: 61  CFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVN 120
           CFQKD+CTRCDQSGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVN
Sbjct: 61  CFQKDSCTRCDQSGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVN 120

Query: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNE 180
           ELRRKTMVAKRALSDFIDTRMVGGGNSP++GEAGKKK+DD+ TCGVD+DLPN+GSHL NE
Sbjct: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPRMGEAGKKKSDDISTCGVDVDLPNYGSHLCNE 180

Query: 181 SSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQP 240
           SS DQD+QVEQNQSNEGE+  R EGDVQPTSMVGVNS+ HDGPIVSNVSN SHS PVVQP
Sbjct: 181 SSRDQDIQVEQNQSNEGENFARAEGDVQPTSMVGVNSEIHDGPIVSNVSNDSHSAPVVQP 240

Query: 241 CEDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGA 300
           CED M+EETHEA+  GTHQVESLE+K+DGKTM+EE LR  DDIQDD IA+DQGQLE PGA
Sbjct: 241 CEDKMDEETHEAETSGTHQVESLEDKDDGKTMDEEILRPIDDIQDDRIAEDQGQLEIPGA 300

Query: 301 HHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRT 360
           +HD EETA+EPQDK DG E+IQ DN+RMLE+I+ AS + DLKNET  KK+RFKTKANRRT
Sbjct: 301 YHDGEETAQEPQDKDDGREQIQPDNERMLENIIPASVDNDLKNETTAKKRRFKTKANRRT 360

Query: 361 DLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNL 420
           DLQNVNSPRKSLRLQTP+  KKSP I+TPEPR  SPH+QTPKP KDHA KIE+VSVSRNL
Sbjct: 361 DLQNVNSPRKSLRLQTPEV-KKSPRIRTPEPRNNSPHIQTPKPQKDHAIKIEKVSVSRNL 420

Query: 421 KLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPWRKILEFGRHI 480
           K Q AS + FK+LDFH GKRKRMRWSVEEEEML+EGVQKFSSTANKNLPWRKILEFGRHI
Sbjct: 421 KPQSASHNHFKSLDFHGGKRKRMRWSVEEEEMLREGVQKFSSTANKNLPWRKILEFGRHI 480

Query: 481 FDNTRTPVDLKDKWRNLLAK 498
           FD+TRTPVDLKDKWRNLL +
Sbjct: 481 FDDTRTPVDLKDKWRNLLGR 488

[Close]

BLAST of Lsi11G013240.1 vs. ExPASy TrEMBL
Match: A0A5A7UVT3 (Protein CHROMATIN REMODELING 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G002030 PE=4 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 3.1e-199
Identity = 370/454 (81.50%), Postives = 403/454 (88.77%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAAS-YPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKID 60
           MRIKNRRGGR KPS  SA S  PSPMASPP P QDVPN EDN L EAS+KETNDVLDKID
Sbjct: 1   MRIKNRRGGRCKPSRPSATSTTPSPMASPPLPDQDVPNVEDNALQEASNKETNDVLDKID 60

Query: 61  CFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVN 120
           CFQKD+CTRCDQSGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVN
Sbjct: 61  CFQKDSCTRCDQSGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVN 120

Query: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNE 180
           ELRRKTMVAKRALSDFIDTRMVGGGNSP++GEAGKKK+DD+ TCGVD+DLPN+GSHL NE
Sbjct: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPRMGEAGKKKSDDISTCGVDVDLPNYGSHLCNE 180

Query: 181 SSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQP 240
           SS DQD+QVEQNQSNEGE+  R EGDVQPTSMVGVNS+ HDGPIVSNVSN SHS PVVQP
Sbjct: 181 SSRDQDIQVEQNQSNEGENFARAEGDVQPTSMVGVNSEIHDGPIVSNVSNDSHSAPVVQP 240

Query: 241 CEDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGA 300
           CED M+EETHEA+  GTHQVESLE+K+DGKTM+EE LR  DDIQDD IA+DQGQLE PGA
Sbjct: 241 CEDKMDEETHEAETSGTHQVESLEDKDDGKTMDEEILRPIDDIQDDRIAEDQGQLEIPGA 300

Query: 301 HHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRT 360
           +HD EETA+EPQDK DG E+IQ DN+RMLE+I+ AS + DLKNET  KK+RFKTKANRRT
Sbjct: 301 YHDGEETAQEPQDKDDGREQIQPDNERMLENIIPASVDNDLKNETTAKKRRFKTKANRRT 360

Query: 361 DLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNL 420
           DLQNVNSPRKSLRLQTP+  KKSP I+TPEPR  SPH+QTPKP KDHA KIE+VSVSRNL
Sbjct: 361 DLQNVNSPRKSLRLQTPEV-KKSPRIRTPEPRNNSPHIQTPKPQKDHAIKIEKVSVSRNL 420

Query: 421 KLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLK 452
           K Q AS + FK+LDFH GKRKRMRWSVEEEEML+
Sbjct: 421 KPQSASHNHFKSLDFHGGKRKRMRWSVEEEEMLR 453

[Close]

BLAST of Lsi11G013240.1 vs. ExPASy TrEMBL
Match: A0A5D3BUM5 (Protein CHROMATIN REMODELING 4-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663G00180 PE=4 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 8.2e-192
Identity = 362/454 (79.74%), Postives = 395/454 (87.00%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAAS-YPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKID 60
           MRIKNRRGGR KPS  SA S  PSPMASPP P Q           EAS+KETNDVLDKID
Sbjct: 1   MRIKNRRGGRCKPSRPSATSTTPSPMASPPLPDQ-----------EASNKETNDVLDKID 60

Query: 61  CFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVN 120
           CFQKD+CTRCDQSGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVN
Sbjct: 61  CFQKDSCTRCDQSGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVN 120

Query: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNE 180
           ELRRKTMVAKRALSDFIDTRMVGGGNSP++GEAGKKK+DD+ TCGVD+DLPN+GSHL NE
Sbjct: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPRMGEAGKKKSDDISTCGVDVDLPNYGSHLCNE 180

Query: 181 SSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQP 240
           SS DQD+QVEQNQSNEGE+  R EGDVQPTSMVGVNS+ HDGPIVSNVSN SHS PVVQP
Sbjct: 181 SSRDQDIQVEQNQSNEGENFARAEGDVQPTSMVGVNSEIHDGPIVSNVSNDSHSAPVVQP 240

Query: 241 CEDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGA 300
           CED M+EETHEA+  GTHQVESLE+K+DGKTM+EE LR  DDIQDD IA+DQGQLE PGA
Sbjct: 241 CEDKMDEETHEAETSGTHQVESLEDKDDGKTMDEEILRPIDDIQDDRIAEDQGQLEIPGA 300

Query: 301 HHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRT 360
           +HD EETA+EPQDK DG E+IQ DN+RMLE+I+ AS + DLKNET  KK+RFKTKANRRT
Sbjct: 301 YHDGEETAQEPQDKDDGREQIQPDNERMLENIIPASVDNDLKNETTAKKRRFKTKANRRT 360

Query: 361 DLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNL 420
           DLQNVNSPRKSLRLQTP+  KKSP I+TPEPR  SPH+QTPKP KDHA KIE+VSVSRNL
Sbjct: 361 DLQNVNSPRKSLRLQTPEV-KKSPRIRTPEPRNNSPHIQTPKPQKDHAIKIEKVSVSRNL 420

Query: 421 KLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLK 452
           K Q AS + FK+LDFH GKRKRMRWSVEEEEML+
Sbjct: 421 KPQSASHNHFKSLDFHGGKRKRMRWSVEEEEMLR 442

[Close]

BLAST of Lsi11G013240.1 vs. NCBI nr
Match: XP_038888454.1 (uncharacterized protein LOC120078293 [Benincasa hispida] >XP_038888455.1 uncharacterized protein LOC120078293 [Benincasa hispida])

HSP 1 Score: 842.4 bits (2175), Expect = 2.0e-240
Identity = 432/510 (84.71%), Postives = 459/510 (90.00%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAASYPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKIDC 60
           M+IKNRRGGR K S RSAAS PSPMASPP P QDVPNAEDNT+HEASSKETNDVLDKIDC
Sbjct: 1   MKIKNRRGGRSKASRRSAASTPSPMASPPLPDQDVPNAEDNTVHEASSKETNDVLDKIDC 60

Query: 61  FQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVNE 120
           FQKDTCTRCDQSGDLLVC EIGCPIALH++CMSCEPSFDEDGRFYCPYCSYKRAL+RVNE
Sbjct: 61  FQKDTCTRCDQSGDLLVCTEIGCPIALHKICMSCEPSFDEDGRFYCPYCSYKRALVRVNE 120

Query: 121 LRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNES 180
           LRRKTMVAKRALSDFIDTRMVGGG SPQI E GKKKA+DV TCGVD++LPNHGSHLGNES
Sbjct: 121 LRRKTMVAKRALSDFIDTRMVGGGKSPQIEETGKKKANDVSTCGVDVELPNHGSHLGNES 180

Query: 181 SGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQPC 240
           S DQD+QVEQNQ NEGED  RTEGD+QPTSMVGVNS+NHDGPIV NVS+ SHSTPV+QPC
Sbjct: 181 SRDQDLQVEQNQGNEGEDHARTEGDIQPTSMVGVNSENHDGPIVFNVSSSSHSTPVLQPC 240

Query: 241 EDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGAH 300
           EDSMNEETHE D  GTHQVESLE+KEDG+TM++ENLRSTDDIQDD IAKDQGQLETP AH
Sbjct: 241 EDSMNEETHEVDTSGTHQVESLEDKEDGETMDKENLRSTDDIQDDGIAKDQGQLETPSAH 300

Query: 301 HDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRTD 360
           HDEEETAREPQDK DGGE+ Q DN+RMLEDIVLASGN DLK+ETIVKK+RFKTKANRR D
Sbjct: 301 HDEEETAREPQDKDDGGEQTQPDNERMLEDIVLASGNNDLKSETIVKKRRFKTKANRRKD 360

Query: 361 LQNVNSPRKSLR-----------LQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATK 420
            QNVN PRKSLR           LQTPDPGKKSPHIQTPEPRK SP +QTP+P  DHATK
Sbjct: 361 QQNVNYPRKSLRLQTPDGMKSPHLQTPDPGKKSPHIQTPEPRKMSPRIQTPRPQIDHATK 420

Query: 421 IEEVSVSRNLKLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPW 480
            E+V VSR+LK QPAS +QFKNLDFH GKRKRM WSVEEEEMLKEGVQKFSSTANKNLPW
Sbjct: 421 TEKVPVSRSLKPQPASQNQFKNLDFHGGKRKRMLWSVEEEEMLKEGVQKFSSTANKNLPW 480

Query: 481 RKILEFGRHIFDNTRTPVDLKDKWRNLLAK 498
           RKILEFGRHIFD+TRTPVDLKDKWRNL AK
Sbjct: 481 RKILEFGRHIFDSTRTPVDLKDKWRNLQAK 510

[Close]

BLAST of Lsi11G013240.1 vs. NCBI nr
Match: XP_008462016.1 (PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 797.3 bits (2058), Expect = 7.3e-227
Identity = 413/500 (82.60%), Postives = 448/500 (89.60%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAAS-YPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKID 60
           MRIKNRRGGR KPS  SA S  PSPMASPP P QDVPN EDN L EAS+KETNDVLDKID
Sbjct: 1   MRIKNRRGGRCKPSRPSATSTTPSPMASPPLPDQDVPNVEDNALQEASNKETNDVLDKID 60

Query: 61  CFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVN 120
           CFQKD+CTRCDQSGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVN
Sbjct: 61  CFQKDSCTRCDQSGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVN 120

Query: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNE 180
           ELRRKTMVAKRALSDFIDTRMVGGGNSP++GEAGKKK+DD+ TCGVD+DLPN+GSHL NE
Sbjct: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPRMGEAGKKKSDDISTCGVDVDLPNYGSHLCNE 180

Query: 181 SSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQP 240
           SS DQD+QVEQNQSNEGE+  R EGDVQPTSMVGVNS+ HDGPIVSNVSN SHS PVVQP
Sbjct: 181 SSRDQDIQVEQNQSNEGENFARAEGDVQPTSMVGVNSEIHDGPIVSNVSNDSHSAPVVQP 240

Query: 241 CEDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGA 300
           CED M+EETHEA+  GTHQVESLE+K+DGKTM+EE LR  DDIQDD IA+DQGQLE PGA
Sbjct: 241 CEDKMDEETHEAETSGTHQVESLEDKDDGKTMDEEILRPIDDIQDDRIAEDQGQLEIPGA 300

Query: 301 HHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRT 360
           +HD EETA+EPQDK DG E+IQ DN+RMLE+I+ AS + DLKNET  KK+RFKTKANRRT
Sbjct: 301 YHDGEETAQEPQDKDDGREQIQPDNERMLENIIPASVDNDLKNETTAKKRRFKTKANRRT 360

Query: 361 DLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNL 420
           DLQNVNSPRKSLRLQTP+  KKSP I+TPEPR  SPH+QTPKP KDHA KIE+VSVSRNL
Sbjct: 361 DLQNVNSPRKSLRLQTPEV-KKSPRIRTPEPRNNSPHIQTPKPQKDHAIKIEKVSVSRNL 420

Query: 421 KLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPWRKILEFGRHI 480
           K Q AS + FK+LDFH GKRKRMRWSVEEEEML+EGVQKFSSTANKNLPWRKILEFGRHI
Sbjct: 421 KPQSASHNHFKSLDFHGGKRKRMRWSVEEEEMLREGVQKFSSTANKNLPWRKILEFGRHI 480

Query: 481 FDNTRTPVDLKDKWRNLLAK 498
           FD+TRTPVDLKDKWRNLL +
Sbjct: 481 FDDTRTPVDLKDKWRNLLGR 499

[Close]

BLAST of Lsi11G013240.1 vs. NCBI nr
Match: XP_011658646.1 (protein CHROMATIN REMODELING 4 [Cucumis sativus] >KGN43387.1 hypothetical protein Csa_020518 [Cucumis sativus])

HSP 1 Score: 778.5 bits (2009), Expect = 3.5e-221
Identity = 405/510 (79.41%), Postives = 442/510 (86.67%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAASYPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKIDC 60
           MRIK RRGGR KPS RS  S PSPMAS P P QDVPN EDNTLH+AS+KET+DVLDKIDC
Sbjct: 1   MRIKTRRGGRCKPSRRSVTSTPSPMASSPLPDQDVPNVEDNTLHDASNKETDDVLDKIDC 60

Query: 61  FQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVNE 120
           FQKDTCTRCD+SGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVNE
Sbjct: 61  FQKDTCTRCDESGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVNE 120

Query: 121 LRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNES 180
           LRRKTMVAKRALSDFIDTRMVGG NSP++GEAGKKK+DDV TCG D++LPNHGSHL NES
Sbjct: 121 LRRKTMVAKRALSDFIDTRMVGGDNSPRMGEAGKKKSDDVSTCGGDVNLPNHGSHLCNES 180

Query: 181 SGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQPC 240
           S D D+QVEQNQSNEGEDR R  GDV+PTSMVGVNS+ HDGPIVSNVSN SHS P VQPC
Sbjct: 181 SRDHDIQVEQNQSNEGEDRARAGGDVEPTSMVGVNSEIHDGPIVSNVSNSSHSAPTVQPC 240

Query: 241 EDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGAH 300
           ED M+EETHEA+  GTHQVESLE+KEDG TM++E LR  DDIQDD IA D GQLETPGA+
Sbjct: 241 EDRMDEETHEAETSGTHQVESLEDKEDGITMDKEILRPIDDIQDDRIAMDHGQLETPGAY 300

Query: 301 HDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRTD 360
           H  E TA+E Q+K  G E+IQ DN++MLE+IV ASGN DLKN+T VKK+RFKTKANRRTD
Sbjct: 301 HYGEATAQELQEKDGGREQIQPDNEKMLENIVPASGNNDLKNKTTVKKRRFKTKANRRTD 360

Query: 361 LQNVNSPRKSLRLQ-----------TPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATK 420
           LQNVNSPRKSLRLQ           TP+P +KSPHIQTPEPRK SP LQTPKP KD+  K
Sbjct: 361 LQNVNSPRKSLRLQTPEEKKSPRIRTPEPRRKSPHIQTPEPRKNSPRLQTPKPQKDNTIK 420

Query: 421 IEEVSVSRNLKLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPW 480
           IE+VSVSRNLK QPAS +Q K+LDFHSGKRKRMRWSVEEEEMLKEGV+KFSST NKNLPW
Sbjct: 421 IEKVSVSRNLKPQPASHNQLKSLDFHSGKRKRMRWSVEEEEMLKEGVRKFSSTTNKNLPW 480

Query: 481 RKILEFGRHIFDNTRTPVDLKDKWRNLLAK 498
           RKILEFGRHIFD+TRTPVDLKDKWR+LL +
Sbjct: 481 RKILEFGRHIFDDTRTPVDLKDKWRSLLGR 510

[Close]

BLAST of Lsi11G013240.1 vs. NCBI nr
Match: XP_008462017.1 (PREDICTED: protein CHROMATIN REMODELING 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 772.7 bits (1994), Expect = 1.9e-219
Identity = 405/500 (81.00%), Postives = 440/500 (88.00%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAAS-YPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKID 60
           MRIKNRRGGR KPS  SA S  PSPMASPP P Q           EAS+KETNDVLDKID
Sbjct: 1   MRIKNRRGGRCKPSRPSATSTTPSPMASPPLPDQ-----------EASNKETNDVLDKID 60

Query: 61  CFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVN 120
           CFQKD+CTRCDQSGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVN
Sbjct: 61  CFQKDSCTRCDQSGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVN 120

Query: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNE 180
           ELRRKTMVAKRALSDFIDTRMVGGGNSP++GEAGKKK+DD+ TCGVD+DLPN+GSHL NE
Sbjct: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPRMGEAGKKKSDDISTCGVDVDLPNYGSHLCNE 180

Query: 181 SSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQP 240
           SS DQD+QVEQNQSNEGE+  R EGDVQPTSMVGVNS+ HDGPIVSNVSN SHS PVVQP
Sbjct: 181 SSRDQDIQVEQNQSNEGENFARAEGDVQPTSMVGVNSEIHDGPIVSNVSNDSHSAPVVQP 240

Query: 241 CEDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGA 300
           CED M+EETHEA+  GTHQVESLE+K+DGKTM+EE LR  DDIQDD IA+DQGQLE PGA
Sbjct: 241 CEDKMDEETHEAETSGTHQVESLEDKDDGKTMDEEILRPIDDIQDDRIAEDQGQLEIPGA 300

Query: 301 HHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRT 360
           +HD EETA+EPQDK DG E+IQ DN+RMLE+I+ AS + DLKNET  KK+RFKTKANRRT
Sbjct: 301 YHDGEETAQEPQDKDDGREQIQPDNERMLENIIPASVDNDLKNETTAKKRRFKTKANRRT 360

Query: 361 DLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNL 420
           DLQNVNSPRKSLRLQTP+  KKSP I+TPEPR  SPH+QTPKP KDHA KIE+VSVSRNL
Sbjct: 361 DLQNVNSPRKSLRLQTPEV-KKSPRIRTPEPRNNSPHIQTPKPQKDHAIKIEKVSVSRNL 420

Query: 421 KLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPWRKILEFGRHI 480
           K Q AS + FK+LDFH GKRKRMRWSVEEEEML+EGVQKFSSTANKNLPWRKILEFGRHI
Sbjct: 421 KPQSASHNHFKSLDFHGGKRKRMRWSVEEEEMLREGVQKFSSTANKNLPWRKILEFGRHI 480

Query: 481 FDNTRTPVDLKDKWRNLLAK 498
           FD+TRTPVDLKDKWRNLL +
Sbjct: 481 FDDTRTPVDLKDKWRNLLGR 488

[Close]

BLAST of Lsi11G013240.1 vs. NCBI nr
Match: KAA0059268.1 (protein CHROMATIN REMODELING 4-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 704.5 bits (1817), Expect = 6.4e-199
Identity = 370/454 (81.50%), Postives = 403/454 (88.77%), Query Frame = 0


Query: 1   MRIKNRRGGRPKPSLRSAAS-YPSPMASPPFPVQDVPNAEDNTLHEASSKETNDVLDKID 60
           MRIKNRRGGR KPS  SA S  PSPMASPP P QDVPN EDN L EAS+KETNDVLDKID
Sbjct: 1   MRIKNRRGGRCKPSRPSATSTTPSPMASPPLPDQDVPNVEDNALQEASNKETNDVLDKID 60

Query: 61  CFQKDTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVN 120
           CFQKD+CTRCDQSGDLLVC E GCPIALHELCMSCEPSFDEDGRFYCPYCSYKRAL+RVN
Sbjct: 61  CFQKDSCTRCDQSGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVN 120

Query: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPQIGEAGKKKADDVLTCGVDLDLPNHGSHLGNE 180
           ELRRKTMVAKRALSDFIDTRMVGGGNSP++GEAGKKK+DD+ TCGVD+DLPN+GSHL NE
Sbjct: 121 ELRRKTMVAKRALSDFIDTRMVGGGNSPRMGEAGKKKSDDISTCGVDVDLPNYGSHLCNE 180

Query: 181 SSGDQDMQVEQNQSNEGEDRVRTEGDVQPTSMVGVNSDNHDGPIVSNVSNGSHSTPVVQP 240
           SS DQD+QVEQNQSNEGE+  R EGDVQPTSMVGVNS+ HDGPIVSNVSN SHS PVVQP
Sbjct: 181 SSRDQDIQVEQNQSNEGENFARAEGDVQPTSMVGVNSEIHDGPIVSNVSNDSHSAPVVQP 240

Query: 241 CEDSMNEETHEAD--GTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPGA 300
           CED M+EETHEA+  GTHQVESLE+K+DGKTM+EE LR  DDIQDD IA+DQGQLE PGA
Sbjct: 241 CEDKMDEETHEAETSGTHQVESLEDKDDGKTMDEEILRPIDDIQDDRIAEDQGQLEIPGA 300

Query: 301 HHDEEETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANRRT 360
           +HD EETA+EPQDK DG E+IQ DN+RMLE+I+ AS + DLKNET  KK+RFKTKANRRT
Sbjct: 301 YHDGEETAQEPQDKDDGREQIQPDNERMLENIIPASVDNDLKNETTAKKRRFKTKANRRT 360

Query: 361 DLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWKDHATKIEEVSVSRNL 420
           DLQNVNSPRKSLRLQTP+  KKSP I+TPEPR  SPH+QTPKP KDHA KIE+VSVSRNL
Sbjct: 361 DLQNVNSPRKSLRLQTPEV-KKSPRIRTPEPRNNSPHIQTPKPQKDHAIKIEKVSVSRNL 420

Query: 421 KLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLK 452
           K Q AS + FK+LDFH GKRKRMRWSVEEEEML+
Sbjct: 421 KPQSASHNHFKSLDFHGGKRKRMRWSVEEEEMLR 453

[Close]

BLAST of Lsi11G013240.1 vs. TAIR 10
Match: AT1G01150.1 (Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain )

HSP 1 Score: 86.7 bits (213), Expect = 5.9e-17
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 438 KRMRWSVEEEEMLKEGVQKFSSTANKNLPWRKILEFGRHIFDNTRTPVDLKDKWRNL 495
           KR+ W+V EE+ML+EGV+KFS T NKN+PW+KILE G+ IF  TR   DLKDKWRN+
Sbjct: 233 KRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM 289

[Close]

BLAST of Lsi11G013240.1 vs. TAIR 10
Match: AT5G03780.1 (TRF-like 10 )

HSP 1 Score: 73.2 bits (178), Expect = 6.8e-13
Identity = 79/282 (28.01%), Postives = 135/282 (47.87%), Query Frame = 0


Query: 243 SMNEETHEADGT---HQVESLENKEDGKTMNEENL----RSTDDIQDDEIA--------- 302
           ++ E+T EA+     +  + ++++++  T++ + +    +STD + D E+          
Sbjct: 137 TLREKTVEAEKAVCKYLDKEMKSRDEDITLSGDEIGNQEQSTDIVSDHELQGEKDGCSSK 196

Query: 303 --KDQGQLETPGAHHDE----EETAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKN 362
              DQG++ T G   DE    E+ A E    A+  E  +    R+L      +G K   +
Sbjct: 197 PDADQGKVGT-GKVIDEVGASEKVATEKFQDAEDDETAKDQGTRILN---TGAGKKREVS 256

Query: 363 ETIVKKKRFKTKANRRTDLQNVNSPRKSLRLQTPDPGKKSPHIQTPEPRKKSPHLQTPKP 422
             +  ++ F  K   +   QN    R+ L++   D   K            S        
Sbjct: 257 SFLSMQESFSAKEQDQVQ-QNEKRRRRGLKIIDSDISSKG----------SSNERNGEDV 316

Query: 423 WKDHATKIEEVSVSRNLKLQPASP---SQFKNLD----FHSGKRKRMRWSVEEEEMLKEG 482
            +   + ++  S S  ++ Q A+    ++ K +     F   +R+R+ W+ EEEEMLK G
Sbjct: 317 TEQVTSSVQVTSPSGRMRNQQATTKVVAKSKTVRDISFFKMDQRRRLLWTYEEEEMLKVG 376

Query: 483 VQKFSSTANKNLPWRKILEFGRHIFDNTRTPVDLKDKWRNLL 496
           V+KF++ ANKN+PWRKILE G  +F  TRTP DLKDKWR+++
Sbjct: 377 VEKFAAEANKNMPWRKILEMGEKVFHETRTPADLKDKWRSMV 403

[Close]

BLAST of Lsi11G013240.1 vs. TAIR 10
Match: AT1G68030.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 6.5e-08
Identity = 23/71 (32.39%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 66  CTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKRALLRVNELRRKT 125
           C  C +SG LL C+  GC + +H+ C+   PS+ + G FYC  C+         + + + 
Sbjct: 229 CVNCKESGKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTCPSAEYVQFQDEV 288

Query: 126 MVAKRALSDFI 137
             AKR L  F+
Sbjct: 289 AKAKRKLVSFL 299

[Close]

BLAST of Lsi11G013240.1 vs. TAIR 10
Match: AT4G12670.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-07
Identity = 73/266 (27.44%), Postives = 120/266 (45.11%), Query Frame = 0


Query: 240 CEDSM---NEETHEADGTHQVESLENKEDGKTMNEENLRSTDDIQDDEIAKDQGQLETPG 299
           CE  +   N+      G  +    E +   K  + E +++  +    E++KD+ +    G
Sbjct: 231 CEQEIPRTNKRVSLGSGLGEGRYREGRHIEKNQHTETVKT--ETHGKEVSKDRKRKRERG 290

Query: 300 AHHDEEE-TAREPQDKADGGEKIQTDNKRMLEDIVLASGNKDLKNETIVKKKRFKTKANR 359
              D +E    E QD+     + Q D +   +D+     NK     + V++   K+ ++ 
Sbjct: 291 VERDGDEFYLAENQDR-----QCQADMRN--DDVAF---NKQATGFSTVEQVERKSVSSI 350

Query: 360 RT--DLQNVNSPRKSLR----LQTPDPGKKSPHIQTPEPRKKSPHLQTPKPWK-DHATKI 419
            +     NVN P  + +    +  P  G +   I+    R  S    + +P K  H + +
Sbjct: 351 SSPESTNNVNDPNVAFQELALIIHPKAGVQEQPIEARPLRSVSSKKPSFQPEKYGHKSYL 410

Query: 420 EEVSVSRNLKLQPASPSQFKNLDFHSGKRKRMRWSVEEEEMLKEGVQKFSSTANKNLPWR 479
           E+   + N   Q A+            KRKR  W++ E EML+ GVQKF     +N+PWR
Sbjct: 411 EKNGPASNDPAQSAT------------KRKRRFWTLAEVEMLRVGVQKF--PGERNIPWR 470

Query: 480 KILEFGRHIFDNTRTPVDLKDKWRNL 495
           KIL+FGR +F + R P DLKDKW+ L
Sbjct: 471 KILQFGRDVFHDERAPSDLKDKWKTL 470

[Close]

BLAST of Lsi11G013240.1 vs. TAIR 10
Match: AT5G22760.1 (PHD finger family protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-05
Identity = 20/50 (40.00%), Postives = 27/50 (54.00%), Query Frame = 0


Query: 64  DTCTRCDQSGDLLVCNEIGCPIALHELCMSCEPSFDEDGRFYCPYCSYKR 114
           D C  C   G LL C+  GCP+A H  C+     +  DG +YCP C+ K+
Sbjct: 414 DECRLCGMDGTLLCCD--GCPLAYHSRCIGVVKMYIPDGPWYCPECTIKK 461

The following BLAST results are available for this feature:

BLAST of Lsi11G013240.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P70371	4.3e-04	43.75	Telomeric repeat-binding factor 1 OS=Mus musculus OX=10090 GN=Terf1 PE=1 SV=1	[more]

BLAST of Lsi11G013240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CHE7	3.5e-227	82.60	protein CHROMATIN REMODELING 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0K518	1.7e-221	79.41	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G03050...	[more]
A0A1S3CFV4	9.3e-220	81.00	protein CHROMATIN REMODELING 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7UVT3	3.1e-199	81.50	Protein CHROMATIN REMODELING 4-like isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3BUM5	8.2e-192	79.74	Protein CHROMATIN REMODELING 4-like isoform X2 OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Lsi11G013240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888454.1	2.0e-240	84.71	uncharacterized protein LOC120078293 [Benincasa hispida] >XP_038888455.1 unchara...	[more]
XP_008462016.1	7.3e-227	82.60	PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1 [Cucumis melo]	[more]
XP_011658646.1	3.5e-221	79.41	protein CHROMATIN REMODELING 4 [Cucumis sativus] >KGN43387.1 hypothetical protei...	[more]
XP_008462017.1	1.9e-219	81.00	PREDICTED: protein CHROMATIN REMODELING 4-like isoform X2 [Cucumis melo]	[more]
KAA0059268.1	6.4e-199	81.50	protein CHROMATIN REMODELING 4-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi11G013240.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01150.1	5.9e-17	64.91	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain	[more]
AT5G03780.1	6.8e-13	28.01	TRF-like 10	[more]
AT1G68030.1	6.5e-08	32.39	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT4G12670.1	1.5e-07	27.44	Homeodomain-like superfamily protein	[more]
AT5G22760.1	2.3e-05	40.00	PHD finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 438..497 e-value: 9.7E-8 score: 41.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 434..495 score: 8.211374
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 65..110 e-value: 5.9E-5 score: 32.5
None	No IPR available	GENE3D	1.10.10.60		coord: 432..496 e-value: 2.3E-14 score: 54.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 382..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..322
None	No IPR available	PANTHER	PTHR47863:SF5	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	coord: 29..497
None	No IPR available	PANTHER	PTHR47863	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	coord: 29..497
None	No IPR available	CDD	cd11660	SANT_TRF	coord: 441..495 e-value: 1.71698E-14 score: 65.6663
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 61..139 e-value: 2.2E-8 score: 36.2
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 439..495 e-value: 5.1E-8 score: 33.0
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 436..497 score: 9.723824
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 66..109
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 63..112 score: 8.6089
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 60..118
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 437..495

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G013240	Lsi11G013240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G013240.1.exon.1	Lsi11G013240.1.exon.1	exon
Lsi11G013240.1.exon.2	Lsi11G013240.1.exon.2	exon
Lsi11G013240.1.exon.3	Lsi11G013240.1.exon.3	exon
Lsi11G013240.1.exon.4	Lsi11G013240.1.exon.4	exon
Lsi11G013240.1.exon.5	Lsi11G013240.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G013240.1.five_prime_UTR.1	Lsi11G013240.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G013240.1.CDS.1	Lsi11G013240.1.CDS.1	CDS
Lsi11G013240.1.CDS.2	Lsi11G013240.1.CDS.2	CDS
Lsi11G013240.1.CDS.3	Lsi11G013240.1.CDS.3	CDS
Lsi11G013240.1.CDS.4	Lsi11G013240.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G013240.1.three_prime_UTR.1	Lsi11G013240.1.three_prime_UTR.1	three_prime_UTR
Lsi11G013240.1.three_prime_UTR.2	Lsi11G013240.1.three_prime_UTR.2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G013240.1	Lsi11G013240.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding