Lsi11G008370.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G008370.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr11: 10444871 .. 10445393 (+)
Sequence length	423
RNA-Seq Expression	Lsi11G008370.1
Synteny	Lsi11G008370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTCCTTTTGAAGTTCTTAGAAAGAAACGCTTTAAAAACATCACTACATGTTCTATAAAACATATCCATCGAACTATAAGCATCCAAAGCGCCTAAGAGACATGGTAACTCAGAAGCTTGTTACAATATCAGTTGTTGTCCTGGTGATATTCGCCTGTTTTGTATCAACAAGTATGCTCTTAACTCATAACTCTAATTCTATAGTTATGCATTTTTTTTCTTTTTTTGTTAAACAATTTTTTCAACAATGCAATTTTTGGTAACATGACAGCGAAAGGAGACGTGTTGGATGTACATTGTGTTCGACCATGTTCTGACACTTATGACGATGATTCTTGTTATAATGATTGTGTTCAAGAGAATAATAGTGCTGGATTTTGTTACCCAAAGCTATCTGATATTTCTAGTGAAAAAGATTGTTGTTGCAATATTTGATCAAACAAAGAGAAATATTTTTGTTTCTCAATATAAGATTGTGTAACATTTATCTTGAACTCTTTAATAAAATTTATTATTCTATAA

mRNA sequence

CTGTCCTTTTGAAGTTCTTAGAAAGAAACGCTTTAAAAACATCACTACATGTTCTATAAAACATATCCATCGAACTATAAGCATCCAAAGCGCCTAAGAGACATGGTAACTCAGAAGCTTGTTACAATATCAGTTGTTGTCCTGGTGATATTCGCCTGTTTTGTATCAACAACGAAAGGAGACGTGTTGGATGTACATTGTGTTCGACCATGTTCTGACACTTATGACGATGATTCTTGTTATAATGATTGTGTTCAAGAGAATAATAGTGCTGGATTTTGTTACCCAAAGCTATCTGATATTTCTAGTGAAAAAGATTGTTGTTGCAATATTTGATCAAACAAAGAGAAATATTTTTGTTTCTCAATATAAGATTGTGTAACATTTATCTTGAACTCTTTAATAAAATTTATTATTCTATAA

Coding sequence (CDS)

ATGTTCTATAAAACATATCCATCGAACTATAAGCATCCAAAGCGCCTAAGAGACATGGTAACTCAGAAGCTTGTTACAATATCAGTTGTTGTCCTGGTGATATTCGCCTGTTTTGTATCAACAACGAAAGGAGACGTGTTGGATGTACATTGTGTTCGACCATGTTCTGACACTTATGACGATGATTCTTGTTATAATGATTGTGTTCAAGAGAATAATAGTGCTGGATTTTGTTACCCAAAGCTATCTGATATTTCTAGTGAAAAAGATTGTTGTTGCAATATTTGA

Protein sequence

MFYKTYPSNYKHPKRLRDMVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFCYPKLSDISSEKDCCCNI

Homology

[Close]

BLAST of Lsi11G008370.1 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.5e-27
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          M TQKL TIS+VVL+IFAC  STTKGDVL+VHCVRPCSDTYDD+SCYNDC+QEN  AGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 79 YPKLSDISSEKDCCCNI 96
          YPKL   S++KDCCCN+
Sbjct: 61 YPKLP--STDKDCCCNV 75

[Close]

BLAST of Lsi11G008370.1 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.7e-26
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          M TQKL TIS+VVLVIF C VSTTKGDVL+VHCVRPC DTYDD+SCYNDC++EN  AGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 79 YPKLSDISSEKDCCCN 95
          YPKL   S++KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]

BLAST of Lsi11G008370.1 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.7e-18
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 41 TTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFCYPKLSDISSEKDCCCNI 96
          T KGD+L+VHCVRPCSDTYDD+SCYNDC++EN  AGFCYPKL   S++KDCCCN+
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCNV 54

[Close]

BLAST of Lsi11G008370.1 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          MVTQKL  +S++V V F+CF S+ +GD L  +CV PCS+   D  C   C++++  AGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 79 YPKLSDISSEKDCCCN 95
           PKL  IS  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

[Close]

BLAST of Lsi11G008370.1 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          M T+KL+ + V + V+ ACFV+ ++G  L  +C+RPCS+TY   SCY DC   N   G C
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGL-WNCIRPCSETYKSLSCYVDCGALNKGTGAC 60

Query: 79 YPKLSDISSEKDCCC 94
           PK   +S E  CCC
Sbjct: 61 IPK-RPVSDEYVCCC 73

[Close]

BLAST of Lsi11G008370.1 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 7.3e-27
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          M TQKL TIS+VVL+IFAC  STTKGDVL+VHCVRPCSDTYDD+SCYNDC+QEN  AGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 79 YPKLSDISSEKDCCCNI 96
          YPKL   S++KDCCCN+
Sbjct: 61 YPKLP--STDKDCCCNV 75

[Close]

BLAST of Lsi11G008370.1 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 6.8e-25
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          M TQKL T+S+V+L+I AC VSTTKGDVL+V+CVRPCSDTYDD+SCYNDC++EN  AGFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 79 YPKLSDISSEKDCCCNI 96
          YPKL   S++KDCCCN+
Sbjct: 61 YPKLP--STDKDCCCNV 75

[Close]

BLAST of Lsi11G008370.1 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-16
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          M ++KL T+  +V+++F  F S+ KGD+  + C+RPC D +DDDSCY+DCV+ N  AGFC
Sbjct: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60

Query: 79 YPKLSDISSEKDCCCN 95
          YPKL  +++EKDCCCN
Sbjct: 61 YPKLPSVTNEKDCCCN 74

[Close]

BLAST of Lsi11G008370.1 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-15
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 33 VIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFCYPKLSDISSEKDCC 92
          +IF   ++  KGDVL++HCV+PCSDTYDD+SCYNDC++EN  AGFCYPKL   S++KDCC
Sbjct: 7  IIFGDMIA--KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDKDCC 64

Query: 93 CN 95
          C+
Sbjct: 67 CS 64

[Close]

BLAST of Lsi11G008370.1 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 19 MVTQKLVTISVVVLVIFACFVSTTKGDVLDVHCVRPCSDTYDDDSCYNDCVQENNSAGFC 78
          MVTQKL  +S++V V F+CF S+ +GD L  +CV PCS+   D  C   C++++  AGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 79 YPKLSDISSEKDCCCN 95
           PKL  IS  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:

BLAST of Lsi11G008370.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G008370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHG9	3.5e-27	77.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
A0A0A0LJG5	6.7e-26	77.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
A0A0A0LKF5	8.7e-18	74.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]
A0A0A0L1R8	3.0e-10	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]
A0A5A7TJH1	4.1e-07	45.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lsi11G008370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61228.1	7.3e-27	77.92	hypothetical protein Csa_006463 [Cucumis sativus]	[more]
KAE8651697.1	6.8e-25	72.73	hypothetical protein Csa_006343 [Cucumis sativus]	[more]
KAG6586428.1	9.9e-16	53.95	hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8651701.1	4.9e-15	64.52	hypothetical protein Csa_006400, partial [Cucumis sativus]	[more]
KGN54497.1	6.2e-10	50.00	hypothetical protein Csa_012842 [Cucumis sativus]	[more]

BLAST of Lsi11G008370.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G008370	Lsi11G008370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G008370.1.exon.1	Lsi11G008370.1.exon.1	exon
Lsi11G008370.1.exon.2	Lsi11G008370.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G008370.1.five_prime_UTR.1	Lsi11G008370.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G008370.1.CDS.1	Lsi11G008370.1.CDS.1	CDS
Lsi11G008370.1.CDS.2	Lsi11G008370.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G008370.1.three_prime_UTR.1	Lsi11G008370.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G008370.1	Lsi11G008370.1-protein	polypeptide