Lsi11G004320.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G004320.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	MORN (Membrane Occupation and Recognition Nexus)repeat-containing protein
Location	chr11: 4548298 .. 4551274 (+)
Sequence length	477
RNA-Seq Expression	Lsi11G004320.1
Synteny	Lsi11G004320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAGTAGAATATGGAGAAGGGGAGTTTTGATGTGTTTTTCACTTGACTTCCTAAGGCCATAACTTGTTCAATGCTTAATGAATTTTAGTGATCTTGAGATGGTTCTATAGCTTAGAATCTAAGCTTTCAAATGAATGTAATTTCAAGTTGTTTGGTGTCCAATACCAAAAGTAATTAGGTTTCGAGTCAACATTGGTTGAAATTAGGGTTTTCTTAACATACATGTGGTTATCGGTTGATTCGATTATAAATTTCAATATTCATTATCGATTTTTTTTGTTTTACTGCCTTGGTTACCTTTTGATAATTCGAATGGTTTAAAAATCGAAATTTTTTATCAATATTAGAGGTAAAATTTTGAACAGAAACATCGGTGAAGTTGCACACCTAAATAGTAGATAATATTTAGTAATAATGACTATTGGTATTACTTATAAAGAAATTGAAATAATTGGTTTTCTTTTTCTTCACTCACTTTTCTCCTAATATGAGATTGAACGAAAAAGAGTGAATTAATTTTTTTAGACTCCTTCAATAAATGTGCTAGCCTACATTGAGTCATTTCTCTACCATTGAGTCGTTTAATAGAGTTTTCTAAGAGTTCACACCTTATTTAGTTGAGAGAAATTTCATGGGTAAAATATATACTGTCTTCAAAATTTAAATAAATAGTTAGCTACCAACACTATATTATAAGAAATGATAAACAAAAACACTTAAAAAATGAGTAGTTTTAACTCTAACTTTTGTTGTAGGATTGAATCACTTATCCAATTGGATAACATGTGTTAAGTGTTATAGAGCTTATAGATCTAGAGCCTATAGATCTTGTGCAAACTACCTAGGATTTAATATCCTACGTGTAAGTTGACGCCTCACTTGTTGTAGGGTCGAGTGGATTGTCTTGTGAGATTAGTCGAGGTGGGTGTAAGCTGGCCCGGACACTCACGGATATAAAAAATATATATATATATATATATATTGTGTAAACTGCCATTACATGTAATAGAGACTTACTTGTTAAATAATGACCTCAAAGAATTGAGGAGGGTGTGGAAAAGAACTATCAATGAGTCCTTATTGTTCCTTTGGCTACCATAAAAAGTAATCACTCATTATTTAACTTAGTTTTAAGGAGAAGAGAAGGGAAGATGGTTGGTTGTAAAAATAGGAAACGTGGAGTAAGGGATTGCTTTGAGGAGACAACATCGAGAGTCAAGACGATGAAGAGAGCATTGCAATGTTTGTAAAGTATAAGAAAACACGCTAAGATATTGTCATAACGTTGAGATGTTGCGAGTGACATCTCAATGCTATTAATTGTAAGTCTTCTCAAAACGTACCCTCGACACCAAAATGTAACATTGCATCGATGACACTGTGGTGTTTTGATTTAAAAATCTTACTATTTGACTATTTCCTTTTAGTAAGGTAAAAATTGCGACGAGCAACGACTGATATTAGTGAAAGTTCGAGAATTTATATTGATTTGTACAATATTAGGAATTTTTTCGATGGGTGCCTAGAAGTCAAGATAACCATTGTAATGGTTTATTGAAGTGTTATTTGCAATATGAGGTGGGAGATATTTATAATATCCACGTAAAATATAACCTGCAACCGTATAAGGCTAGATGTAGTTTCGAGCTTGGGAATAACCAATATATTTTCAATGTTTTCTCTTTTCATTATACTATTTACTTTGTATTATATTGGCTTGTGATGTAGTTCGCTTGTGGAATCATAGATTTATTTATAATTATACATTATTGCTTGGCTTAGTAGAGTTTTTAGTATATTTTGTCGTTATGAAATGTAAGTTCCAATGCTTATCACTACATATATACCTACTCCATCATACAGTAAATAATGATTTTTTGCCCAAAGTTTACAAATTGAAGGAAGAATGTAAAAGTTCAATACCAAAACTAAATATGAAGTTAATAACAACATCAATCTATATACTTAGAGCTTCATTTAGCCAGAATTACAAAATCAAATGCAGAAAGAATGCTATTAGAACAGTGATGAAATTTGACTATGATTCAAAAAAGAAAACCCCATTTAAGAGAGATGAAAATTAGAATGGAAAAAACTAACAAAATGATCATTTGAAGATATTTCCTAAAAGATAGTATATGCATATATAATTGTACTTTGCAAAGAGCTAAAATGTACTGTAAATATAACTTTATCATAAGGAATAGGCAGCAGGTTGAACTTGACTCTGATCAAGTTTGTTATGTGTTAAAGTACAAATTGCAATGCATATACTGTCCATAAAAACAATCAGAAAGACCCAATAACTAATACCAACATAAATACAACAACACTCCCTGAAGTTTGACAAAATAGCAGTGGTTCAACATGCTTGAACTCCCAAGGTTTTTGTTTGTTCACTGATTAGGCCCCTGTTCAGGGGGCAGATGAACAATGTTGAAGAGGATTTCACGCATTATCGGCCTGTCGGATGGACAAGTTGAGAGAAGATTGCAGTACTATTTTGTTCGTTAGATTGAAGTAACTCTTGCTCACTTCCAAGGCTGAGGTTGTTGTAATGTGCAGCCATTTCTTGGCTTCTCTGCCTATCTTCCTCATGTATCCTCGAGCTATGACTCGAACCACCATCAGCACTTTCCTGAAGTTGGAGAGCAAATTCAAGGTTCCATAACACATCACCCATAGACGGTCGTTCAGCTCCATGGTCATCCAGGCATTTCTCAGCTGCATCTGCAAACTTCTTCAAGCTTTCAGGGGTGATTTTCCCTTTGAGGTGGGGGTCGATGAGATCCTCGAGAAATCCTTTTCGTTTGCAATGCAACGCCCAATCCGCAAGACTAACTTGTTCCTTTGGTAGGCTTGGATTTAGAGCAGGTCTTGCACACAACACTTCAAACAGAACAACTCCAAATGAATACACATCAGATTTTTCAGTTAGTTGTTGCCTTCGGAAGTACTCCGGATCTAAGTAG

mRNA sequence

ATGGGCAAGAGAAGAGAAGGGAAGATGGTTGGTTGTAAAAATAGGAAACGTGGAGTAAGGGATTGCTTTGAGGAGACAACATCGAGAGTCAAGACGATGAAGAGAGCATTGCAATGTTTGCCCCTGTTCAGGGGGCAGATGAACAATGTTGAAGAGGATTTCACGCATTATCGGCCTGTCGGATGGACAAACGGTCGTTCAGCTCCATGGTCATCCAGGCATTTCTCAGCTGCATCTGCAAACTTCTTCAAGCTTTCAGGGGTGATTTTCCCTTTGAGGTGGGGGTCGATGAGATCCTCGAGAAATCCTTTTCGTTTGCAATGCAACGCCCAATCCGCAAGACTAACTTGTTCCTTTGGTAGGCTTGGATTTAGAGCAGGTCTTGCACACAACACTTCAAACAGAACAACTCCAAATGAATACACATCAGATTTTTCAGTTAGTTGTTGCCTTCGGAAGTACTCCGGATCTAAGTAG

Coding sequence (CDS)

ATGGGCAAGAGAAGAGAAGGGAAGATGGTTGGTTGTAAAAATAGGAAACGTGGAGTAAGGGATTGCTTTGAGGAGACAACATCGAGAGTCAAGACGATGAAGAGAGCATTGCAATGTTTGCCCCTGTTCAGGGGGCAGATGAACAATGTTGAAGAGGATTTCACGCATTATCGGCCTGTCGGATGGACAAACGGTCGTTCAGCTCCATGGTCATCCAGGCATTTCTCAGCTGCATCTGCAAACTTCTTCAAGCTTTCAGGGGTGATTTTCCCTTTGAGGTGGGGGTCGATGAGATCCTCGAGAAATCCTTTTCGTTTGCAATGCAACGCCCAATCCGCAAGACTAACTTGTTCCTTTGGTAGGCTTGGATTTAGAGCAGGTCTTGCACACAACACTTCAAACAGAACAACTCCAAATGAATACACATCAGATTTTTCAGTTAGTTGTTGCCTTCGGAAGTACTCCGGATCTAAGTAG

Protein sequence

MGKRREGKMVGCKNRKRGVRDCFEETTSRVKTMKRALQCLPLFRGQMNNVEEDFTHYRPVGWTNGRSAPWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGFRAGLAHNTSNRTTPNEYTSDFSVSCCLRKYSGSK

Homology

[Close]

BLAST of Lsi11G004320.1 vs. ExPASy TrEMBL
Match: A0A445CNZ0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g027529 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 59/82 (71.95%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 65  GRSAPWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGF 124
           GRS P S +HFSA S NFFKLSG+IFP + GSM SS  P  L  +A SARLTCSFGRLGF
Sbjct: 3   GRSTPMSDKHFSAVSTNFFKLSGLIFPFKEGSMISSSVPLLLHSSAHSARLTCSFGRLGF 62

Query: 125 RAGLAHNTSNRTTPNEYTSDFS 147
           + GLAH  SNRTTPNEYTSDFS
Sbjct: 63  KTGLAHRASNRTTPNEYTSDFS 84

[Close]

BLAST of Lsi11G004320.1 vs. ExPASy TrEMBL
Match: A0A5A7R957 (MORN (Membrane Occupation and Recognition Nexus)repeat-containing protein OS=Striga asiatica OX=4170 GN=STAS_30597 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-20
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 65  GRSAPWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGF 124
           GRS P+S++HFSAAS N  K S  I P   GS     +P      A SA+ TCS GR G 
Sbjct: 58  GRSTPYSAKHFSAASTNLLKDSPQIVPAITGSTIFPISPLAFFLRAHSAKFTCSLGRPGS 117

Query: 125 RAGLAHNTSNRTTPNEYTSDFSVSCCLRKYSGSK 159
            AGLAH+TSN TTPNEYTSDFSVSCC  KYSGS+
Sbjct: 118 SAGLAHSTSNNTTPNEYTSDFSVSCCRLKYSGSR 151

[Close]

BLAST of Lsi11G004320.1 vs. ExPASy TrEMBL
Match: A0A287MVT7 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-10
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 71  SSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGFRAGLAH 130
           S+ HF A+S N  K SGVI  L  GS      PF  Q +AQS +LTCS G L F  G AH
Sbjct: 4   SATHFFASSENILKHSGVISSLMQGSTICLSTPFSWQDSAQSRKLTCSSGSLVFITGRAH 63

Query: 131 NTSNRTTPNEYTSDF 146
             SN TTP EYTSDF
Sbjct: 64  RISNNTTPKEYTSDF 78

[Close]

BLAST of Lsi11G004320.1 vs. ExPASy TrEMBL
Match: A0A7J6G668 (SWIM-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006849 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 39/72 (54.17%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 69  PWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGFRAGL 128
           P S RHFSA S NF    G+I P   GS  SS  PF L   AQSA+  CS G     AGL
Sbjct: 141 PSSCRHFSAVSLNFLNELGLIIPFIEGSTISSIIPFFLHLIAQSAKFICSLGSCVSMAGL 200

Query: 129 AHNTSNRTTPNE 141
           A  TS RTTPNE
Sbjct: 201 ALRTSRRTTPNE 212

[Close]

BLAST of Lsi11G004320.1 vs. ExPASy TrEMBL
Match: A0A371I7N5 (Histone H4 (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_04458 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-05
Identity = 40/97 (41.24%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 50  VEEDFTHYRPVGWTNGRSAPWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCN 109
           + +D +H RPV      +   S   FS+ S          FP R  S   S  P      
Sbjct: 121 IPQDISHRRPV------NTKISQTFFSSFSK---------FPKRIWSDFPSNCPLFCHFI 180

Query: 110 AQSARLTCSFGRLGFRAGLAHNTSNRTTPNEYTSDFS 147
             SA+ T S GR+G   GLA +TSNRTTPNEYTSDFS
Sbjct: 181 VHSAKFTISLGRVGSITGLAQSTSNRTTPNEYTSDFS 202

[Close]

BLAST of Lsi11G004320.1 vs. NCBI nr
Match: RYR52644.1 (hypothetical protein Ahy_A06g027529 isoform C [Arachis hypogaea])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 59/82 (71.95%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 65  GRSAPWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGF 124
           GRS P S +HFSA S NFFKLSG+IFP + GSM SS  P  L  +A SARLTCSFGRLGF
Sbjct: 3   GRSTPMSDKHFSAVSTNFFKLSGLIFPFKEGSMISSSVPLLLHSSAHSARLTCSFGRLGF 62

Query: 125 RAGLAHNTSNRTTPNEYTSDFS 147
           + GLAH  SNRTTPNEYTSDFS
Sbjct: 63  KTGLAHRASNRTTPNEYTSDFS 84

[Close]

BLAST of Lsi11G004320.1 vs. NCBI nr
Match: KAG6558127.1 (hypothetical protein Mapa_000308 [Marchantia paleacea])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 57/94 (60.64%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 65  GRSAPWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGF 124
           G S P S++HFSA S NF + SG+++P  +GSM  S  P    C A SA  TCS GR G 
Sbjct: 56  GLSIPCSAKHFSAVSPNFLRDSGLMYPTSFGSMICSNMPIFCHCIAHSAMFTCSLGRAGL 115

Query: 125 RAGLAHNTSNRTTPNEYTSDFSVSCCLRKYSGSK 159
            AGLAH TS  TTPNEYTS FSVSCCLRKYSGS+
Sbjct: 116 MAGLAHTTSMSTTPNEYTSLFSVSCCLRKYSGSR 149

[Close]

BLAST of Lsi11G004320.1 vs. NCBI nr
Match: GER53107.1 (MORN (Membrane Occupation and Recognition Nexus)repeat-containing protein [Striga asiatica])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-19
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 65  GRSAPWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGF 124
           GRS P+S++HFSAAS N  K S  I P   GS     +P      A SA+ TCS GR G 
Sbjct: 58  GRSTPYSAKHFSAASTNLLKDSPQIVPAITGSTIFPISPLAFFLRAHSAKFTCSLGRPGS 117

Query: 125 RAGLAHNTSNRTTPNEYTSDFSVSCCLRKYSGSK 159
            AGLAH+TSN TTPNEYTSDFSVSCC  KYSGS+
Sbjct: 118 SAGLAHSTSNNTTPNEYTSDFSVSCCRLKYSGSR 151

[Close]

BLAST of Lsi11G004320.1 vs. NCBI nr
Match: CAB3501203.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-08
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 65  GRSAPWSSRHFSAASANFFKLSGVIFP-LRWGSMRSSRNPFRLQCNAQSARLTCSFGRLG 124
           GRSAP+S+RHFSA SANF   SG I P + W +M SS +PF  +  A SAR T S G +G
Sbjct: 49  GRSAPYSARHFSAVSANFLSESGRIVPAILWSTMLSS-SPFLSRFVAHSARFTMSGGSVG 108

Query: 125 FRAGLAHNTSNRTTPNE 141
              G A +TS+ TTP +
Sbjct: 109 SMTGRAQSTSSNTTPKD 124

[Close]

BLAST of Lsi11G004320.1 vs. NCBI nr
Match: KAF4377569.1 (hypothetical protein G4B88_006849 [Cannabis sativa])

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-07
Identity = 39/72 (54.17%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 69  PWSSRHFSAASANFFKLSGVIFPLRWGSMRSSRNPFRLQCNAQSARLTCSFGRLGFRAGL 128
           P S RHFSA S NF    G+I P   GS  SS  PF L   AQSA+  CS G     AGL
Sbjct: 141 PSSCRHFSAVSLNFLNELGLIIPFIEGSTISSIIPFFLHLIAQSAKFICSLGSCVSMAGL 200

Query: 129 AHNTSNRTTPNE 141
           A  TS RTTPNE
Sbjct: 201 ALRTSRRTTPNE 212

The following BLAST results are available for this feature:

BLAST of Lsi11G004320.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G004320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445CNZ0	6.1e-24	71.95	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g027529 PE=4 SV=1	[more]
A0A5A7R957	5.3e-20	59.57	MORN (Membrane Occupation and Recognition Nexus)repeat-containing protein OS=Str...	[more]
A0A287MVT7	6.5e-10	54.67	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
A0A7J6G668	1.8e-07	54.17	SWIM-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006849 P...	[more]
A0A371I7N5	3.7e-05	41.24	Histone H4 (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_04458 PE=3 SV=1	[more]

BLAST of Lsi11G004320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR52644.1	1.3e-23	71.95	hypothetical protein Ahy_A06g027529 isoform C [Arachis hypogaea]	[more]
KAG6558127.1	1.5e-21	60.64	hypothetical protein Mapa_000308 [Marchantia paleacea]	[more]
GER53107.1	1.1e-19	59.57	MORN (Membrane Occupation and Recognition Nexus)repeat-containing protein [Strig...	[more]
CAB3501203.1	5.7e-08	51.95	unnamed protein product [Digitaria exilis]	[more]
KAF4377569.1	3.7e-07	54.17	hypothetical protein G4B88_006849 [Cannabis sativa]	[more]

BLAST of Lsi11G004320.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G004320	Lsi11G004320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G004320.1.exon.1	Lsi11G004320.1.exon.1	exon
Lsi11G004320.1.exon.2	Lsi11G004320.1.exon.2	exon
Lsi11G004320.1.exon.3	Lsi11G004320.1.exon.3	exon
Lsi11G004320.1.exon.4	Lsi11G004320.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G004320.1.CDS.1	Lsi11G004320.1.CDS.1	CDS
Lsi11G004320.1.CDS.2	Lsi11G004320.1.CDS.2	CDS
Lsi11G004320.1.CDS.3	Lsi11G004320.1.CDS.3	CDS
Lsi11G004320.1.CDS.4	Lsi11G004320.1.CDS.4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G004320.1	Lsi11G004320.1-protein	polypeptide