Lsi06G013250.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G013250.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor MYB24-like
Location	chr06: 23833606 .. 23835418 (-)
Sequence length	1316
RNA-Seq Expression	Lsi06G013250.1
Synteny	Lsi06G013250.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAAGCAAAACCATGCACATGCAGTCTTTACAACTCCTTCTCCTCATAAATCTTCTTCCCTTATTATTCTAAATAATATATATTATTCGATATGGAATTAAAAGAGATAATATAATCAAGCAACGGAATTTAAGCACGTGAAAAAAAAATACCTCTTTTTCTTTTAGCAGACTTGAAATAACTCATATTTTATTAAGATCTTTTTGTTATAATATAAATAGGCGCAGAAGGCTGTGTTTGAAGGAATTTAAAAAATCTTTGTGTTGTTCTTTAATGGCTTCTCATTGCAAGAGCCAGAGCCCGAGCCCGAGGCCGAGCGAGAGCGGGTCGTCGAGTGTTAATGAAGACGACCAAATTAGTGAGGTTAGAAGAGGGCCATGGAGTGTTGATGAAGATTCTCTTCTTATTCATTCTGTTTCTGTTCATGGTGAAGGGCGATGGAATTTGCTTGCTATTCGTTCAGGTAATTAATTTTATTTTTAAAAGATAATTTTGGATGTGTTAATTAAAATTAATATGGGTTTTACTTTTATTTAAAGGGCTTAAAAGGACAGGGAAGAGTTGCAGATTGAGATGGCTTAATTATCTAAAACCTGAAGTGAAGAGAGGAAATCTTTCTCCTCAAGAACAGCTTTTGATTCTCGACCTTCATTCCAGATGGGGCAATAGGTAATTTTACTACAAATAATTAATTAATTCATCAATTTTTTTTAAAATGGTTTAACCATAATTATTTCTCTCTCCAACTTTATTTTATTGTTTTTTTTTAAATGGTTTAATTTGGGTTTGGTTTTGGAAAAGTTATTACATAACGATGCCTACTTTTCGAGGACAAAATTTAAAACTTTATATTTTAAATCAATTTTATTAATTGTGCCTTTTAATTTATTGGGATGAGAGGTACAAACTTTTTTTTCTTCATATGTAAAAGAAAAATCTTAGTAGGATCATCAACCCAAATCGAAAAATCAAATAAATTTAAAAATTTCAATTGAGAAATCATAACATTATGACACGACAATAATATTGTATAATTTTTTTTTCTCTAGTAAGAATATTATTTTAAATTTTTTCGACTCTTTATTTTTAGGTGGTCAAAAATTGCACAAGAATTACCGGGAAGAACGGACAATGAAATAAAAAATTATTGGAGGACGAGAGTGCAAAAACAAGCAAGGGTTCTTAACATCAACACCAACAGCCCAGAATTTAAAGACGTTATCAACCGCTTTTGGATCCCCAGATTGGTCCACCAAATAAACGAATCTTCTTCTTCTTCTTCTTCTTCTCCTCCGCCGTCGACCACGGCGGCGACTCGCCCAACCCCTCAACTTTCCGATTCAGACTCGCTGCCGGCAGGCGGCGATGGGAACCGTCGCCATTTCGACAAGGAGCAAAATAGCACCAGTTCGGAATCTATGGATATCTCTCAGGTCTCCGATCCATTCTCCGATGTCCCATCTTGGCACAACGGCGGCGGAGAGACGGCGGCGGCGAATTTTGAATACCCATTAGGGGATTCCGGGTTGCAATTAACGGATTGGATTGACGACGACGATTCTTTTGGCGGCTGCTTATGGAACTTTGACGGATTGTGGCAATTCTAATTGGAAATTAAACACAAAACTAATTGGTTTTTTTTTTTTTTTTTTGGAAGATAAACGTAGCGTTTTATTTTATTTTAAAATTATTTCTGTGAAAAATAACAAATATTTTACCTTTCCCCAAATGTATATTAATTTTAAATATTTGATTGGTCAAGTATTTGTATTGATTTTTTTTTGTTAAATTATAAATTTATGATTTGAAAA

mRNA sequence

CTTAAAGCAAAACCATGCACATGCAGTCTTTACAACTCCTTCTCCTCATAAATCTTCTTCCCTTATTATTCTAAATAATATATATTATTCGATATGGAATTAAAAGAGATAATATAATCAAGCAACGGAATTTAAGCACGTGAAAAAAAAATACCTCTTTTTCTTTTAGCAGACTTGAAATAACTCATATTTTATTAAGATCTTTTTGTTATAATATAAATAGGCGCAGAAGGCTGTGTTTGAAGGAATTTAAAAAATCTTTGTGTTGTTCTTTAATGGCTTCTCATTGCAAGAGCCAGAGCCCGAGCCCGAGGCCGAGCGAGAGCGGGTCGTCGAGTGTTAATGAAGACGACCAAATTAGTGAGGTTAGAAGAGGGCCATGGAGTGTTGATGAAGATTCTCTTCTTATTCATTCTGTTTCTGTTCATGGTGAAGGGCGATGGAATTTGCTTGCTATTCGTTCAGGGCTTAAAAGGACAGGGAAGAGTTGCAGATTGAGATGGCTTAATTATCTAAAACCTGAAGTGAAGAGAGGAAATCTTTCTCCTCAAGAACAGCTTTTGATTCTCGACCTTCATTCCAGATGGGGCAATAGGTGGTCAAAAATTGCACAAGAATTACCGGGAAGAACGGACAATGAAATAAAAAATTATTGGAGGACGAGAGTGCAAAAACAAGCAAGGGTTCTTAACATCAACACCAACAGCCCAGAATTTAAAGACGTTATCAACCGCTTTTGGATCCCCAGATTGGTCCACCAAATAAACGAATCTTCTTCTTCTTCTTCTTCTTCTCCTCCGCCGTCGACCACGGCGGCGACTCGCCCAACCCCTCAACTTTCCGATTCAGACTCGCTGCCGGCAGGCGGCGATGGGAACCGTCGCCATTTCGACAAGGAGCAAAATAGCACCAGTTCGGAATCTATGGATATCTCTCAGGTCTCCGATCCATTCTCCGATGTCCCATCTTGGCACAACGGCGGCGGAGAGACGGCGGCGGCGAATTTTGAATACCCATTAGGGGATTCCGGGTTGCAATTAACGGATTGGATTGACGACGACGATTCTTTTGGCGGCTGCTTATGGAACTTTGACGGATTGTGGCAATTCTAATTGGAAATTAAACACAAAACTAATTGGTTTTTTTTTTTTTTTTTTGGAAGATAAACGTAGCGTTTTATTTTATTTTAAAATTATTTCTGTGAAAAATAACAAATATTTTACCTTTCCCCAAATGTATATTAATTTTAAATATTTGATTGGTCAAGTATTTGTATTGATTTTTTTTTGTTAAATTATAAATTTATGATTTGAAAA

Coding sequence (CDS)

ATGGCTTCTCATTGCAAGAGCCAGAGCCCGAGCCCGAGGCCGAGCGAGAGCGGGTCGTCGAGTGTTAATGAAGACGACCAAATTAGTGAGGTTAGAAGAGGGCCATGGAGTGTTGATGAAGATTCTCTTCTTATTCATTCTGTTTCTGTTCATGGTGAAGGGCGATGGAATTTGCTTGCTATTCGTTCAGGGCTTAAAAGGACAGGGAAGAGTTGCAGATTGAGATGGCTTAATTATCTAAAACCTGAAGTGAAGAGAGGAAATCTTTCTCCTCAAGAACAGCTTTTGATTCTCGACCTTCATTCCAGATGGGGCAATAGGTGGTCAAAAATTGCACAAGAATTACCGGGAAGAACGGACAATGAAATAAAAAATTATTGGAGGACGAGAGTGCAAAAACAAGCAAGGGTTCTTAACATCAACACCAACAGCCCAGAATTTAAAGACGTTATCAACCGCTTTTGGATCCCCAGATTGGTCCACCAAATAAACGAATCTTCTTCTTCTTCTTCTTCTTCTCCTCCGCCGTCGACCACGGCGGCGACTCGCCCAACCCCTCAACTTTCCGATTCAGACTCGCTGCCGGCAGGCGGCGATGGGAACCGTCGCCATTTCGACAAGGAGCAAAATAGCACCAGTTCGGAATCTATGGATATCTCTCAGGTCTCCGATCCATTCTCCGATGTCCCATCTTGGCACAACGGCGGCGGAGAGACGGCGGCGGCGAATTTTGAATACCCATTAGGGGATTCCGGGTTGCAATTAACGGATTGGATTGACGACGACGATTCTTTTGGCGGCTGCTTATGGAACTTTGACGGATTGTGGCAATTCTAA

Protein sequence

MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGGETAAANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF

Homology

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy Swiss-Prot
Match: Q10MB4 (Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 6.6e-55
Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 20  SSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNY 79
           +S  E+    ++RRGPW+V+ED LL++ ++ HGEGRWN LA  +GLKRTGKSCRLRWLNY
Sbjct: 9   ASSEEEVMGGDLRRGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNY 68

Query: 80  LKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLN 139
           L+P+++RGN++PQEQLLIL+LHSRWGNRWSKIAQ LPGRTDNEIKNYWRTRVQK A+ L 
Sbjct: 69  LRPDLRRGNITPQEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLK 128

Query: 140 INTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAATRPTPQLS 190
            + NS +FKDV+   W+PRLV +I  +++         T      TP LS
Sbjct: 129 CDVNSQQFKDVMRYLWMPRLVERIQAAAAGQQQQQEGGT-----DTPPLS 173

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy Swiss-Prot
Match: Q2QZJ8 (Transcription factor JAMYB OS=Oryza sativa subsp. japonica OX=39947 GN=JAMYB PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.5e-54
Identity = 102/167 (61.08%), Postives = 125/167 (74.85%), Query Frame = 0


Query: 7   SQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLK 66
           S  P P   +  ++ ++     +E+RRGPW+VDED  LI+ +S HGEGRWN LA  +GLK
Sbjct: 9   SHHPVPGEQQEAAAELSS----AELRRGPWTVDEDLTLINYISDHGEGRWNALARAAGLK 68

Query: 67  RTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNY 126
           RTGKSCRLRWLNYL+P+VKRGN + +EQLLILDLHSRWGNRWSKIAQ LPGRTDNEIKNY
Sbjct: 69  RTGKSCRLRWLNYLRPDVKRGNFTAEEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNY 128

Query: 127 WRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSS 174
           WRTRVQK A+ LN + NS  FKD +   W+PRL  +I+  + +   S
Sbjct: 129 WRTRVQKHAKQLNCDVNSKRFKDAMKYLWMPRLAERIHARAGAVDDS 171

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy Swiss-Prot
Match: Q9C9G7 (Transcription factor MYB62 OS=Arabidopsis thaliana OX=3702 GN=MYB62 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.5e-54
Identity = 105/193 (54.40%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 24  EDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKPE 83
           ++ +  E+RRGPW+++ED+LL + +  +GEGRWN +A  +GLKRTGKSCRLRWLNYLKP+
Sbjct: 12  KESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYLKPD 71

Query: 84  VKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLNINTN 143
           ++RGNL+PQEQLLIL+LHS+WGNRWSKIAQ LPGRTDNEIKNYWRTRVQKQAR LNI +N
Sbjct: 72  IRRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQARQLNIESN 131

Query: 144 SPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAATRPTPQLSDSDSLPAGGDGNRR 203
           S +F D +  FW+PRL+ ++ ++SS++++   P               DSL    D +  
Sbjct: 132 SDKFFDAVRSFWVPRLIEKMEQNSSTTTTYCCPQNNNNNSLLLPSQSHDSLSMQKDIDYS 191

Query: 204 HFDKEQNSTSSES 217
            F     S+S+ +
Sbjct: 192 GFSNIDGSSSTST 204

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy Swiss-Prot
Match: Q9LDE1 (Transcription factor MYB108 OS=Arabidopsis thaliana OX=3702 GN=MYB108 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.0e-52
Identity = 97/168 (57.74%), Postives = 131/168 (77.98%), Query Frame = 0


Query: 16  ESGSSSVNED-DQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRL 75
           E G S  N + +   +++RGPW+ +ED  L++ ++ +GEGRWN L+  +GL+RTGKSCRL
Sbjct: 3   EKGRSLKNNNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRL 62

Query: 76  RWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQ 135
           RWLNYL+P+V+RGN++ +EQLLIL+LHSRWGNRWSKIAQ LPGRTDNEIKNYWRTRVQK 
Sbjct: 63  RWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 122

Query: 136 ARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAAT 183
           A+ L  + NS +FKD +   W+PRLV +I  +S+SS+++   +TT  T
Sbjct: 123 AKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTT 170

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy Swiss-Prot
Match: Q9FGY3 (Transcription factor MYB78 OS=Arabidopsis thaliana OX=3702 GN=MYB78 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.3e-52
Identity = 97/152 (63.82%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 30  EVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKPEVKRGNL 89
           +VRRGPW+V+ED  LI+ ++ HGEGRWN LA  + LKRTGKSCRLRWLNYL+P+V+RGN+
Sbjct: 25  DVRRGPWTVEEDLELINYIASHGEGRWNSLARCAELKRTGKSCRLRWLNYLRPDVRRGNI 84

Query: 90  SPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLNINTNSPEFKD 149
           + +EQLLIL+LH+RWGNRWSKIAQ LPGRTDNEIKNYWRTRVQK A+ L  + NS +FKD
Sbjct: 85  TLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSQQFKD 144

Query: 150 VINRFWIPRLVHQINESSSSSSSSPPPSTTAA 182
            +   W+PRLV +I  +S  S S     TT++
Sbjct: 145 TMKYLWMPRLVERIQAASIGSVSMSSCVTTSS 176

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy TrEMBL
Match: A0A5D3DYB4 (Transcription factor MYB24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00700 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.8e-127
Identity = 234/278 (84.17%), Postives = 249/278 (89.57%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLA 60
           MAS CK+ SPSP PS SGSSS  EDDQ SEVRRGPWSVDEDSLLIHS+SVHGEGRWNLLA
Sbjct: 1   MASPCKNPSPSPSPSSSGSSSFIEDDQ-SEVRRGPWSVDEDSLLIHSISVHGEGRWNLLA 60

Query: 61  IRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTD 120
           IRSGL+RTGKSCRLRWLNYLKPEV+RGNLSPQEQLLILDLHSRWGNRWSKIAQ+LPGRTD
Sbjct: 61  IRSGLRRTGKSCRLRWLNYLKPEVRRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGRTD 120

Query: 121 NEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTA 180
           NEIKNYWRT+VQKQA++LNI TNSPEFKD+INR WIPRL+HQIN+     SSSPPP  TA
Sbjct: 121 NEIKNYWRTKVQKQAKILNIGTNSPEFKDIINRLWIPRLLHQIND-----SSSPPPPHTA 180

Query: 181 ATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGGETA 240
            T PTPQ SDSDSLP   DGNRRHF  EQNSTSSES++ISQVSDPFSDVPSW++GGGETA
Sbjct: 181 TTHPTPQFSDSDSLPT-VDGNRRHF--EQNSTSSESVEISQVSDPFSDVPSWNHGGGETA 240

Query: 241 AANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
           AANFEY  GDS LQ TDWIDDDDSF GCLWNFDGLWQF
Sbjct: 241 AANFEYTTGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 269

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy TrEMBL
Match: A0A1S3BWZ6 (transcription factor MYB24-like OS=Cucumis melo OX=3656 GN=LOC103494131 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.8e-127
Identity = 234/278 (84.17%), Postives = 249/278 (89.57%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLA 60
           MAS CK+ SPSP PS SGSSS  EDDQ SEVRRGPWSVDEDSLLIHS+SVHGEGRWNLLA
Sbjct: 1   MASPCKNPSPSPSPSSSGSSSFIEDDQ-SEVRRGPWSVDEDSLLIHSISVHGEGRWNLLA 60

Query: 61  IRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTD 120
           IRSGL+RTGKSCRLRWLNYLKPEV+RGNLSPQEQLLILDLHSRWGNRWSKIAQ+LPGRTD
Sbjct: 61  IRSGLRRTGKSCRLRWLNYLKPEVRRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGRTD 120

Query: 121 NEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTA 180
           NEIKNYWRT+VQKQA++LNI TNSPEFKD+INR WIPRL+HQIN+     SSSPPP  TA
Sbjct: 121 NEIKNYWRTKVQKQAKILNIGTNSPEFKDIINRLWIPRLLHQIND-----SSSPPPPHTA 180

Query: 181 ATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGGETA 240
            T PTPQ SDSDSLP   DGNRRHF  EQNSTSSES++ISQVSDPFSDVPSW++GGGETA
Sbjct: 181 TTHPTPQFSDSDSLPT-VDGNRRHF--EQNSTSSESVEISQVSDPFSDVPSWNHGGGETA 240

Query: 241 AANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
           AANFEY  GDS LQ TDWIDDDDSF GCLWNFDGLWQF
Sbjct: 241 AANFEYTTGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 269

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy TrEMBL
Match: A0A6J1EF71 (transcription factor JAMYB-like OS=Cucurbita moschata OX=3662 GN=LOC111433607 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.8e-119
Identity = 223/282 (79.08%), Postives = 242/282 (85.82%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLA 60
           MAS CKSQS S   S S SSSV ED Q + +RRGPW+VDEDSLL+HS+SVHGEGRWNLLA
Sbjct: 7   MASPCKSQSQSQSQSSSCSSSVVEDTQ-NGLRRGPWTVDEDSLLVHSISVHGEGRWNLLA 66

Query: 61  IRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTD 120
           IRSGL+RTGKSCRLRWLNYLKP+VKRGNLSPQEQLLILDLHSRWGNRWSKIAQ LPGRTD
Sbjct: 67  IRSGLRRTGKSCRLRWLNYLKPDVKRGNLSPQEQLLILDLHSRWGNRWSKIAQHLPGRTD 126

Query: 121 NEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSS----PPP 180
           NEIKNYWRTRVQKQA++LNI+TNS EFK++INRFWIPRLV QINESS+S SSS    PPP
Sbjct: 127 NEIKNYWRTRVQKQAKLLNIDTNSSEFKEIINRFWIPRLVQQINESSNSPSSSFSSPPPP 186

Query: 181 STTAATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGG 240
                 RP  QLSD+D+LPA  DG RRHFD EQNSTSSESMDISQVSDPFSDVPSW N G
Sbjct: 187 PNMPPARPASQLSDADTLPA-ADGKRRHFDTEQNSTSSESMDISQVSDPFSDVPSW-NHG 246

Query: 241 GETAAANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
            E  AA+F+YP+GDS   LT W+DDDDSFGGCLWNFDGLWQF
Sbjct: 247 SEMTAADFQYPIGDSRSPLTGWVDDDDSFGGCLWNFDGLWQF 285

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy TrEMBL
Match: A0A6J1I942 (transcription factor MYB62-like OS=Cucurbita maxima OX=3661 GN=LOC111472194 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.9e-113
Identity = 217/281 (77.22%), Postives = 238/281 (84.70%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLA 60
           MAS CK+QS     S S SSSV ED+Q + +RRGPW+VDEDSLL+HS+SVHGEGRWNLLA
Sbjct: 7   MASPCKTQS----QSSSYSSSVVEDNQ-NGLRRGPWTVDEDSLLVHSISVHGEGRWNLLA 66

Query: 61  IRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTD 120
           IRSGL+RTGKSCRLRWLNYLKP+VKRGNLSPQEQLLILDLHSRWGNRWSKIAQ LPGRTD
Sbjct: 67  IRSGLRRTGKSCRLRWLNYLKPDVKRGNLSPQEQLLILDLHSRWGNRWSKIAQHLPGRTD 126

Query: 121 NEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESS---SSSSSSPPPS 180
           NEIKNYWRTRVQKQA++LNI+TNS EFK++IN FWIPRLVHQINESS   SSS SSPPP 
Sbjct: 127 NEIKNYWRTRVQKQAKLLNIDTNSSEFKEIINCFWIPRLVHQINESSNSPSSSFSSPPPP 186

Query: 181 TTAATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGG 240
                R   QLSD+D+LPA  DG  RHFD EQNSTSSES+DISQVSDPFSDVPSW N   
Sbjct: 187 NMPPARLASQLSDTDTLPA-ADGKGRHFDTEQNSTSSESVDISQVSDPFSDVPSW-NHCS 246

Query: 241 ETAAANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
           E  AA FEYP+G+S   LT W+DDDD+FGGCLWNFDGLWQF
Sbjct: 247 EMTAAGFEYPIGNSRSPLTGWVDDDDTFGGCLWNFDGLWQF 280

[Close]

BLAST of Lsi06G013250.1 vs. ExPASy TrEMBL
Match: A0A6J1C0P4 (transcription factor JAMYB-like OS=Momordica charantia OX=3673 GN=LOC111007370 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 2.0e-86
Identity = 175/267 (65.54%), Postives = 209/267 (78.28%), Query Frame = 0


Query: 15  SESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRL 74
           S   SS+V EDDQI  +RRGPW+ DEDSLLI S+SVHGEGRWNLLAIRSGL+RTGKSCRL
Sbjct: 7   SSCSSSTVVEDDQIG-LRRGPWTADEDSLLIRSISVHGEGRWNLLAIRSGLRRTGKSCRL 66

Query: 75  RWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQ 134
           RWLNYLKP+VKRG+LSP EQLLILDLH RWGNRWSKIAQELPGRTDNEIKNYWRTRVQ+Q
Sbjct: 67  RWLNYLKPDVKRGSLSPHEQLLILDLHCRWGNRWSKIAQELPGRTDNEIKNYWRTRVQRQ 126

Query: 135 ARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAATRPTPQLSDSDSL 194
           A++LNI+TNSPEFKD+INRFWIPRLV QI+E SS+SS   PPS+++++  +PQLSDSD  
Sbjct: 127 AKLLNIDTNSPEFKDIINRFWIPRLVQQIHEESSNSS---PPSSSSSS--SPQLSDSD-- 186

Query: 195 PAGGDGNRRHFDKEQNSTSSESMDISQVSDP--FSD-VPSWHNGGGETAAANFEYPLGDS 254
                      +K     ++E  +    SDP  FSD VPSW++GGG     +F+YP+G  
Sbjct: 187 -----------EKRPRFVTAEEDEKVTGSDPLLFSDVVPSWNHGGGGD-MGDFDYPIG-- 246

Query: 255 GLQLTDWIDDDDSFGGCLWNFDGLWQF 279
             + T W+++DDS  G LWNF+GLWQF
Sbjct: 247 --EFTSWMEEDDSDCGGLWNFEGLWQF 249

[Close]

BLAST of Lsi06G013250.1 vs. NCBI nr
Match: XP_004137543.1 (transcription factor MYB62 [Cucumis sativus] >KAE8652463.1 hypothetical protein Csa_014188 [Cucumis sativus])

HSP 1 Score: 476.1 bits (1224), Expect = 2.1e-130
Identity = 239/280 (85.36%), Postives = 253/280 (90.36%), Query Frame = 0


Query: 1   MASHCK--SQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNL 60
           MAS CK  S SPSP PS SGS S  EDDQ   VRRGPWSVDEDSLLIHS+SVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGR 120
           LAIRSGL+RTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQ+LPGR
Sbjct: 61  LAIRSGLRRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGR 120

Query: 121 TDNEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPST 180
           TDNEIKNYWRT+VQKQA++LNI+TNSPEFKD+INRFWIPRL+HQIN+SSSSSSS PPP  
Sbjct: 121 TDNEIKNYWRTKVQKQAKILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPH 180

Query: 181 TAATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGGE 240
           TAAT PTPQ SDSDSLPA  DG RRHF  EQNSTSSES++ISQVSDPFSDVPSW+ GGGE
Sbjct: 181 TAATHPTPQFSDSDSLPA-ADGKRRHF--EQNSTSSESVEISQVSDPFSDVPSWNYGGGE 240

Query: 241 TAAANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
           TAAANFEY +GDS LQ TDWIDDDDSF GCLWNFDGLWQF
Sbjct: 241 TAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 277

[Close]

BLAST of Lsi06G013250.1 vs. NCBI nr
Match: XP_038901337.1 (transcription factor MYB62-like [Benincasa hispida])

HSP 1 Score: 475.3 bits (1222), Expect = 3.5e-130
Identity = 241/290 (83.10%), Postives = 259/290 (89.31%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSE------------SGSSSVNEDDQISEVRRGPWSVDEDSLLIHSV 60
           MAS CK+++PS   S+            SGSS V EDDQ SEVRRGPWSVDEDSLLIHS+
Sbjct: 1   MASPCKNRNPSESQSQSQNQSESQSQSSSGSSIVIEDDQ-SEVRRGPWSVDEDSLLIHSI 60

Query: 61  SVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRW 120
           SVHGEGRWNLLAIRSGL+RTGKSCRLRWLNYLKP+VKRGNLSPQEQLLILDLHSRWGNRW
Sbjct: 61  SVHGEGRWNLLAIRSGLRRTGKSCRLRWLNYLKPDVKRGNLSPQEQLLILDLHSRWGNRW 120

Query: 121 SKIAQELPGRTDNEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSS 180
           SKIAQ LPGRTDNEIKNYWRTRVQKQA+VLNIN NSPEFKD+I+R WIPRL+HQINE   
Sbjct: 121 SKIAQLLPGRTDNEIKNYWRTRVQKQAKVLNININSPEFKDIIHRCWIPRLLHQINE--- 180

Query: 181 SSSSSPPPSTTAATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSD 240
           SSSSSPPP TTAAT PTPQLSDSDS+PA  DGNRRHFDKE+NSTSSESMDISQVSDP SD
Sbjct: 181 SSSSSPPPPTTAATSPTPQLSDSDSVPA-TDGNRRHFDKERNSTSSESMDISQVSDPLSD 240

Query: 241 VPSWHNGGGETAAANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
           VPSW++GGG+T AANF+YP+GDSGLQLTDWIDDDDSFGGCLWNFDGLWQF
Sbjct: 241 VPSWNHGGGQTTAANFDYPIGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 285

[Close]

BLAST of Lsi06G013250.1 vs. NCBI nr
Match: XP_008453409.1 (PREDICTED: transcription factor MYB24-like [Cucumis melo] >KAA0058085.1 transcription factor MYB24-like [Cucumis melo var. makuwa] >TYK28438.1 transcription factor MYB24-like [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.7e-127
Identity = 234/278 (84.17%), Postives = 249/278 (89.57%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLA 60
           MAS CK+ SPSP PS SGSSS  EDDQ SEVRRGPWSVDEDSLLIHS+SVHGEGRWNLLA
Sbjct: 1   MASPCKNPSPSPSPSSSGSSSFIEDDQ-SEVRRGPWSVDEDSLLIHSISVHGEGRWNLLA 60

Query: 61  IRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTD 120
           IRSGL+RTGKSCRLRWLNYLKPEV+RGNLSPQEQLLILDLHSRWGNRWSKIAQ+LPGRTD
Sbjct: 61  IRSGLRRTGKSCRLRWLNYLKPEVRRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGRTD 120

Query: 121 NEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTA 180
           NEIKNYWRT+VQKQA++LNI TNSPEFKD+INR WIPRL+HQIN+     SSSPPP  TA
Sbjct: 121 NEIKNYWRTKVQKQAKILNIGTNSPEFKDIINRLWIPRLLHQIND-----SSSPPPPHTA 180

Query: 181 ATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGGETA 240
            T PTPQ SDSDSLP   DGNRRHF  EQNSTSSES++ISQVSDPFSDVPSW++GGGETA
Sbjct: 181 TTHPTPQFSDSDSLPT-VDGNRRHF--EQNSTSSESVEISQVSDPFSDVPSWNHGGGETA 240

Query: 241 AANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
           AANFEY  GDS LQ TDWIDDDDSF GCLWNFDGLWQF
Sbjct: 241 AANFEYTTGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 269

[Close]

BLAST of Lsi06G013250.1 vs. NCBI nr
Match: XP_022926469.1 (transcription factor JAMYB-like [Cucurbita moschata])

HSP 1 Score: 436.8 bits (1122), Expect = 1.4e-118
Identity = 223/282 (79.08%), Postives = 242/282 (85.82%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLA 60
           MAS CKSQS S   S S SSSV ED Q + +RRGPW+VDEDSLL+HS+SVHGEGRWNLLA
Sbjct: 7   MASPCKSQSQSQSQSSSCSSSVVEDTQ-NGLRRGPWTVDEDSLLVHSISVHGEGRWNLLA 66

Query: 61  IRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTD 120
           IRSGL+RTGKSCRLRWLNYLKP+VKRGNLSPQEQLLILDLHSRWGNRWSKIAQ LPGRTD
Sbjct: 67  IRSGLRRTGKSCRLRWLNYLKPDVKRGNLSPQEQLLILDLHSRWGNRWSKIAQHLPGRTD 126

Query: 121 NEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSS----PPP 180
           NEIKNYWRTRVQKQA++LNI+TNS EFK++INRFWIPRLV QINESS+S SSS    PPP
Sbjct: 127 NEIKNYWRTRVQKQAKLLNIDTNSSEFKEIINRFWIPRLVQQINESSNSPSSSFSSPPPP 186

Query: 181 STTAATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGG 240
                 RP  QLSD+D+LPA  DG RRHFD EQNSTSSESMDISQVSDPFSDVPSW N G
Sbjct: 187 PNMPPARPASQLSDADTLPA-ADGKRRHFDTEQNSTSSESMDISQVSDPFSDVPSW-NHG 246

Query: 241 GETAAANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
            E  AA+F+YP+GDS   LT W+DDDDSFGGCLWNFDGLWQF
Sbjct: 247 SEMTAADFQYPIGDSRSPLTGWVDDDDSFGGCLWNFDGLWQF 285

[Close]

BLAST of Lsi06G013250.1 vs. NCBI nr
Match: KAG6587655.1 (Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.9 bits (1117), Expect = 5.3e-118
Identity = 224/282 (79.43%), Postives = 243/282 (86.17%), Query Frame = 0


Query: 1   MASHCKSQSPSPRPSESGSSSVNEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLA 60
           MAS CKSQS S   S S SSSV ED Q + +RRGPW+VDEDSLL+HS+SVHGEGRWNLLA
Sbjct: 1   MASPCKSQSQS--QSSSCSSSVVEDTQ-NGLRRGPWTVDEDSLLVHSISVHGEGRWNLLA 60

Query: 61  IRSGLKRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTD 120
           IRSGL+RTGKSCRLRWLNYLKP+VKRGNLSPQEQLLILDLHSRWGNRWSKIAQ LPGRTD
Sbjct: 61  IRSGLRRTGKSCRLRWLNYLKPDVKRGNLSPQEQLLILDLHSRWGNRWSKIAQHLPGRTD 120

Query: 121 NEIKNYWRTRVQKQARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSS----PPP 180
           NEIKNYWRTRVQKQA++LNI+TNS EFK++INRFWIPRLV QINESS+S SSS    PPP
Sbjct: 121 NEIKNYWRTRVQKQAKLLNIDTNSSEFKEIINRFWIPRLVQQINESSNSPSSSFSSPPPP 180

Query: 181 STTAATRPTPQLSDSDSLPAGGDGNRRHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGG 240
                 RP  QLSD+D+LPA  DG RRHFD EQNSTSSESMDISQVSDPFSDVPSW N G
Sbjct: 181 PNMPPARPASQLSDADTLPA-ADGKRRHFDTEQNSTSSESMDISQVSDPFSDVPSW-NHG 240

Query: 241 GETAAANFEYPLGDSGLQLTDWIDDDDSFGGCLWNFDGLWQF 279
            E  AA+F+YP+GDS  QLT W+DDDDSFGGCLWNFDGLWQF
Sbjct: 241 SEMTAADFQYPIGDSRPQLTGWVDDDDSFGGCLWNFDGLWQF 277

[Close]

BLAST of Lsi06G013250.1 vs. TAIR 10
Match: AT1G25340.1 (myb domain protein 116 )

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-57
Identity = 125/274 (45.62%), Postives = 168/274 (61.31%), Query Frame = 0


Query: 23  NEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKP 82
           N +++ +E R+GPW+++ED+LL + +S +GEGRWNLLA  SGLKR GKSCRLRWLNYLKP
Sbjct: 10  NGNEEGAEQRKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRAGKSCRLRWLNYLKP 69

Query: 83  EVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLNINT 142
           ++KRGNL+PQEQLLIL+LHS+WGNRWSKI++ LPGRTDN+IKNYWRTRVQKQAR LNI++
Sbjct: 70  DIKRGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQARQLNIDS 129

Query: 143 NSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAATRPTPQLSDSDSLPAGGDGNR 202
           NS +F +V+  FW PRL+++I ++S +++        A     P L DS  L        
Sbjct: 130 NSHKFIEVVRSFWFPRLINEIKDNSYTNNI----KANAPDLLGPILRDSKDLGFNNMDCS 189

Query: 203 RHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGGETAAANF---------EYPLGDSG- 262
               ++   T S+ MD S +    S   S   GG     +           EY +   G 
Sbjct: 190 TSMSEDLKKT-SQFMDFSDLETTMSLEGS--RGGSSQCVSEVYSSFPCLEEEYMVAVMGS 249

Query: 263 --------LQLTDWIDDDDSFGGCLWNFDGLWQF 279
                     + D   +DD     +WN D +WQF
Sbjct: 250 SDISALHDCHVADSKYEDDVTQDLMWNMDDIWQF 276

[Close]

BLAST of Lsi06G013250.1 vs. TAIR 10
Match: AT1G68320.1 (myb domain protein 62 )

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-55
Identity = 105/193 (54.40%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 24  EDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKPE 83
           ++ +  E+RRGPW+++ED+LL + +  +GEGRWN +A  +GLKRTGKSCRLRWLNYLKP+
Sbjct: 12  KESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYLKPD 71

Query: 84  VKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLNINTN 143
           ++RGNL+PQEQLLIL+LHS+WGNRWSKIAQ LPGRTDNEIKNYWRTRVQKQAR LNI +N
Sbjct: 72  IRRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQARQLNIESN 131

Query: 144 SPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAATRPTPQLSDSDSLPAGGDGNRR 203
           S +F D +  FW+PRL+ ++ ++SS++++   P               DSL    D +  
Sbjct: 132 SDKFFDAVRSFWVPRLIEKMEQNSSTTTTYCCPQNNNNNSLLLPSQSHDSLSMQKDIDYS 191

Query: 204 HFDKEQNSTSSES 217
            F     S+S+ +
Sbjct: 192 GFSNIDGSSSTST 204

[Close]

BLAST of Lsi06G013250.1 vs. TAIR 10
Match: AT1G48000.1 (myb domain protein 112 )

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-54
Identity = 99/175 (56.57%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 30  EVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKPEVKRGNL 89
           E+RRGPW+V+ED  L+  +S+HGEGRWN L+  +GL RTGKSCRLRWLNYL+P+++RG++
Sbjct: 31  EIRRGPWTVEEDMKLVSYISLHGEGRWNSLSRSAGLNRTGKSCRLRWLNYLRPDIRRGDI 90

Query: 90  SPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLNINTNSPEFKD 149
           S QEQ +IL+LHSRWGNRWSKIAQ LPGRTDNEIKNYWRTRVQK A++L  + NS +FKD
Sbjct: 91  SLQEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKLLKCDVNSKQFKD 150

Query: 150 VINRFWIPRLVHQI--NESSSSSSSSPPPSTTAATRPTPQLSDSDSLPA---GGD 200
            I   W+PRL+ +I   +S   +S+   P  ++    T   S S+++ +   GGD
Sbjct: 151 TIKHLWMPRLIERIAATQSVQFTSNHYSPENSSVATATSSTSSSEAVRSSFYGGD 205

[Close]

BLAST of Lsi06G013250.1 vs. TAIR 10
Match: AT1G25340.2 (myb domain protein 116 )

HSP 1 Score: 208.4 bits (529), Expect = 7.5e-54
Identity = 121/274 (44.16%), Postives = 165/274 (60.22%), Query Frame = 0


Query: 23  NEDDQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKP 82
           N +++ +E R+GPW+++ED+LL + +S +GEGRWNLLA     K +GKSCRLRWLNYLKP
Sbjct: 10  NGNEEGAEQRKGPWTLEEDTLLTNYISHNGEGRWNLLA-----KSSGKSCRLRWLNYLKP 69

Query: 83  EVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQARVLNINT 142
           ++KRGNL+PQEQLLIL+LHS+WGNRWSKI++ LPGRTDN+IKNYWRTRVQKQAR LNI++
Sbjct: 70  DIKRGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQARQLNIDS 129

Query: 143 NSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAATRPTPQLSDSDSLPAGGDGNR 202
           NS +F +V+  FW PRL+++I ++S +++        A     P L DS  L        
Sbjct: 130 NSHKFIEVVRSFWFPRLINEIKDNSYTNNI----KANAPDLLGPILRDSKDLGFNNMDCS 189

Query: 203 RHFDKEQNSTSSESMDISQVSDPFSDVPSWHNGGGETAAANF---------EYPLGDSG- 262
               ++   T S+ MD S +    S   S   GG     +           EY +   G 
Sbjct: 190 TSMSEDLKKT-SQFMDFSDLETTMSLEGS--RGGSSQCVSEVYSSFPCLEEEYMVAVMGS 249

Query: 263 --------LQLTDWIDDDDSFGGCLWNFDGLWQF 279
                     + D   +DD     +WN D +WQF
Sbjct: 250 SDISALHDCHVADSKYEDDVTQDLMWNMDDIWQF 271

[Close]

BLAST of Lsi06G013250.1 vs. TAIR 10
Match: AT3G06490.1 (myb domain protein 108 )

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-53
Identity = 97/168 (57.74%), Postives = 131/168 (77.98%), Query Frame = 0


Query: 16  ESGSSSVNED-DQISEVRRGPWSVDEDSLLIHSVSVHGEGRWNLLAIRSGLKRTGKSCRL 75
           E G S  N + +   +++RGPW+ +ED  L++ ++ +GEGRWN L+  +GL+RTGKSCRL
Sbjct: 3   EKGRSLKNNNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRL 62

Query: 76  RWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVQKQ 135
           RWLNYL+P+V+RGN++ +EQLLIL+LHSRWGNRWSKIAQ LPGRTDNEIKNYWRTRVQK 
Sbjct: 63  RWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH 122

Query: 136 ARVLNINTNSPEFKDVINRFWIPRLVHQINESSSSSSSSPPPSTTAAT 183
           A+ L  + NS +FKD +   W+PRLV +I  +S+SS+++   +TT  T
Sbjct: 123 AKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTT 170

The following BLAST results are available for this feature:

BLAST of Lsi06G013250.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10MB4	6.6e-55	60.00	Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 ...	[more]
Q2QZJ8	2.5e-54	61.08	Transcription factor JAMYB OS=Oryza sativa subsp. japonica OX=39947 GN=JAMYB PE=...	[more]
Q9C9G7	2.5e-54	54.40	Transcription factor MYB62 OS=Arabidopsis thaliana OX=3702 GN=MYB62 PE=2 SV=1	[more]
Q9LDE1	4.0e-52	57.74	Transcription factor MYB108 OS=Arabidopsis thaliana OX=3702 GN=MYB108 PE=1 SV=1	[more]
Q9FGY3	5.3e-52	63.82	Transcription factor MYB78 OS=Arabidopsis thaliana OX=3702 GN=MYB78 PE=1 SV=1	[more]

BLAST of Lsi06G013250.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYB4	1.8e-127	84.17	Transcription factor MYB24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BWZ6	1.8e-127	84.17	transcription factor MYB24-like OS=Cucumis melo OX=3656 GN=LOC103494131 PE=4 SV=...	[more]
A0A6J1EF71	6.8e-119	79.08	transcription factor JAMYB-like OS=Cucurbita moschata OX=3662 GN=LOC111433607 PE...	[more]
A0A6J1I942	1.9e-113	77.22	transcription factor MYB62-like OS=Cucurbita maxima OX=3661 GN=LOC111472194 PE=4...	[more]
A0A6J1C0P4	2.0e-86	65.54	transcription factor JAMYB-like OS=Momordica charantia OX=3673 GN=LOC111007370 P...	[more]

BLAST of Lsi06G013250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137543.1	2.1e-130	85.36	transcription factor MYB62 [Cucumis sativus] >KAE8652463.1 hypothetical protein ...	[more]
XP_038901337.1	3.5e-130	83.10	transcription factor MYB62-like [Benincasa hispida]	[more]
XP_008453409.1	3.7e-127	84.17	PREDICTED: transcription factor MYB24-like [Cucumis melo] >KAA0058085.1 transcri...	[more]
XP_022926469.1	1.4e-118	79.08	transcription factor JAMYB-like [Cucurbita moschata]	[more]
KAG6587655.1	5.3e-118	79.43	Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi06G013250.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25340.1	1.9e-57	45.62	myb domain protein 116	[more]
AT1G68320.1	1.8e-55	54.40	myb domain protein 62	[more]
AT1G48000.1	2.6e-54	56.57	myb domain protein 112	[more]
AT1G25340.2	7.5e-54	44.16	myb domain protein 116	[more]
AT3G06490.1	2.9e-53	57.74	myb domain protein 108	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 85..133 e-value: 9.4E-14 score: 61.7 coord: 32..82 e-value: 6.6E-14 score: 62.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 28..80 score: 10.824164
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 81..131 score: 9.546801
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 90..129 e-value: 7.73323E-11 score: 54.1186
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 35..80 e-value: 1.132E-10 score: 53.7334
None	No IPR available	GENE3D	1.10.10.60		coord: 90..131 e-value: 7.7E-18 score: 66.2
None	No IPR available	GENE3D	1.10.10.60		coord: 25..85 e-value: 9.1E-16 score: 59.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..194
None	No IPR available	PANTHER	PTHR45675:SF75	TRANSCRIPTION FACTOR MYB21-LIKE	coord: 22..274
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 86..129 e-value: 1.7E-13 score: 50.6 coord: 33..80 e-value: 1.9E-12 score: 47.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 81..135 score: 23.200819
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 28..80 score: 18.350136
IPR044676	MYB-like transcription factor EOBI/EOBII-like, plant	PANTHER	PTHR45675	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	coord: 22..274
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 31..127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G013250	Lsi06G013250	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G013250.1.exon.1	Lsi06G013250.1.exon.1	exon
Lsi06G013250.1.exon.2	Lsi06G013250.1.exon.2	exon
Lsi06G013250.1.exon.3	Lsi06G013250.1.exon.3	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G013250.1.three_prime_UTR.1	Lsi06G013250.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G013250.1.CDS.3	Lsi06G013250.1.CDS.3	CDS
Lsi06G013250.1.CDS.2	Lsi06G013250.1.CDS.2	CDS
Lsi06G013250.1.CDS.1	Lsi06G013250.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G013250.1.five_prime_UTR.1	Lsi06G013250.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G013250.1	Lsi06G013250.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding