Lsi06G012840.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G012840.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin efflux carrier component
Location	chr06: 23381041 .. 23381937 (+)
Sequence length	897
RNA-Seq Expression	Lsi06G012840.1
Synteny	Lsi06G012840.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGCGATTTTTCTGGCAGCCTAATGGTTCAAATTGTAGTTCTTCAATGCATAATTTGGTACACTTTAATGCTCTTCATGTTCGAATTTAGAGGAGCTAGGAACTTAATCTCCGAGCAATTTCCCGACACGGCAGCATCCATCGTCTCGATCCATGTTGAATCCGACGTCGTTTCACTCGATGGTCGGCAAGTACTGGAAACAGAGGCGGAGATTAAAGACGATGGCAAACTCCATGTTACTGTCAGGCGGTCCAACGCCTCTCGTTCAGATATTTTCTCCCGTCGATCACAGGGGTTGTCGTCGGGAACTCCCCGACCGTCGAATCTCACCAACGCCGAGATTTATTCATTGCAGTCATCAAGAAACCCGACGCCGAGAGGGTCGAGTTTTAACCATACTGATTTTTACTCCATGATCGGTGGTGGACCGGTGGTAGCAGCAGCGTCGAGGGGGCCGACGCCACGACCGTCAAATTATGAGGAGGAGCATCACGGCGGAGGAGGAGGGAAGAGTGGAGCGAGATATTATTATCATGGGAATTCGGCACCGGCGCCACCACATTATCCTACTCCGAACATGGGAATGTTTTCACCGACGGGATCGAGAAATGTGGTTTCGGGTAAGAAATCGACGACGAACGGGCAGGCCGGTCAGTACAAGATGGATGAGAGTAACAATAACAACAATAAAGATCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCCCCTGTTTCTGATGTGTTTGGGAGCCATGATTATGGAGCTCCCCATGATCACAAAGAAGTTAAATTGGCCGTTTCTCCTAGAAAAGGTTTGTTCTTTCCTTCATCCCTTCTTCATTTGTTGAGATTTGCACTAATTTTCAAGTTCACAAGTGGTAGCGACCGTTAA

mRNA sequence

ATGTATGGCGATTTTTCTGGCAGCCTAATGGTTCAAATTGTAGTTCTTCAATGCATAATTTGGTACACTTTAATGCTCTTCATGTTCGAATTTAGAGGAGCTAGGAACTTAATCTCCGAGCAATTTCCCGACACGGCAGCATCCATCGTCTCGATCCATGTTGAATCCGACGTCGTTTCACTCGATGGTCGGCAAGTACTGGAAACAGAGGCGGAGATTAAAGACGATGGCAAACTCCATGTTACTGTCAGGCGGTCCAACGCCTCTCGTTCAGATATTTTCTCCCGTCGATCACAGGGGTTGTCGTCGGGAACTCCCCGACCGTCGAATCTCACCAACGCCGAGATTTATTCATTGCAGTCATCAAGAAACCCGACGCCGAGAGGGTCGAGTTTTAACCATACTGATTTTTACTCCATGATCGGTGGTGGACCGGTGGTAGCAGCAGCGTCGAGGGGGCCGACGCCACGACCGTCAAATTATGAGGAGGAGCATCACGGCGGAGGAGGAGGGAAGAGTGGAGCGAGATATTATTATCATGGGAATTCGGCACCGGCGCCACCACATTATCCTACTCCGAACATGGGAATGTTTTCACCGACGGGATCGAGAAATGTGGTTTCGGGTAAGAAATCGACGACGAACGGGCAGGCCGGTCAGTACAAGATGGATGAGAGTAACAATAACAACAATAAAGATCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCCCCTGTTTCTGATGTGTTTGGGAGCCATGATTATGGAGCTCCCCATGATCACAAAGAAGTTAAATTGGCCGTTTCTCCTAGAAAAGGTTTGTTCTTTCCTTCATCCCTTCTTCATTTGTTGAGATTTGCACTAATTTTCAAGTTCACAAGTGGTAGCGACCGTTAA

Coding sequence (CDS)

ATGTATGGCGATTTTTCTGGCAGCCTAATGGTTCAAATTGTAGTTCTTCAATGCATAATTTGGTACACTTTAATGCTCTTCATGTTCGAATTTAGAGGAGCTAGGAACTTAATCTCCGAGCAATTTCCCGACACGGCAGCATCCATCGTCTCGATCCATGTTGAATCCGACGTCGTTTCACTCGATGGTCGGCAAGTACTGGAAACAGAGGCGGAGATTAAAGACGATGGCAAACTCCATGTTACTGTCAGGCGGTCCAACGCCTCTCGTTCAGATATTTTCTCCCGTCGATCACAGGGGTTGTCGTCGGGAACTCCCCGACCGTCGAATCTCACCAACGCCGAGATTTATTCATTGCAGTCATCAAGAAACCCGACGCCGAGAGGGTCGAGTTTTAACCATACTGATTTTTACTCCATGATCGGTGGTGGACCGGTGGTAGCAGCAGCGTCGAGGGGGCCGACGCCACGACCGTCAAATTATGAGGAGGAGCATCACGGCGGAGGAGGAGGGAAGAGTGGAGCGAGATATTATTATCATGGGAATTCGGCACCGGCGCCACCACATTATCCTACTCCGAACATGGGAATGTTTTCACCGACGGGATCGAGAAATGTGGTTTCGGGTAAGAAATCGACGACGAACGGGCAGGCCGGTCAGTACAAGATGGATGAGAGTAACAATAACAACAATAAAGATCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCCCCTGTTTCTGATGTGTTTGGGAGCCATGATTATGGAGCTCCCCATGATCACAAAGAAGTTAAATTGGCCGTTTCTCCTAGAAAAGGTTTGTTCTTTCCTTCATCCCTTCTTCATTTGTTGAGATTTGCACTAATTTTCAAGTTCACAAGTGGTAGCGACCGTTAA

Protein sequence

MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVSLDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYHGNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWSSSASPVSDVFGSHDYGAPHDHKEVKLAVSPRKGLFFPSSLLHLLRFALIFKFTSGSDR

Homology

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy Swiss-Prot
Match: Q9C6B8 (Auxin efflux carrier component 1 OS=Arabidopsis thaliana OX=3702 GN=PIN1 PE=1 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.1e-84
Identity = 191/294 (64.97%), Postives = 215/294 (73.13%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG+FSG LMVQIVVLQCIIWYTLMLF+FE+RGA+ LISEQFPDTA SIVSIHV+SD++S
Sbjct: 124 MYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQ LETEAEIK+DGKLHVTVRRSNASRSDI+SRRSQGLS+ TPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQPLETEAEIKEDGKLHVTVRRSNASRSDIYSRRSQGLSA-TPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMI---GG-----GPVVAA-ASRGPTPRPSNYEEEHHGG--- 180
           SSRNPTPRGSSFNHTDFYSM+   GG     GP  A   S+GPTPRPSNYEE+  GG   
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMMASGGGRNSNFGPGEAVFGSKGPTPRPSNYEED--GGPAK 303

Query: 181 ----GGGKSGARYYYH--GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYK 240
               G      R++Y   G+      HYP PN GMFSP    N   G  +   G A    
Sbjct: 304 PTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSP----NTGGGGGTAAKGNA-PVV 363

Query: 241 MDESNNNNNKDLHMFVWSSSASPVSDVFGS------HDYG-APHDH-KEVKLAV 269
             +  + N +DLHMFVWSSSASPVSDVFG        DY  A +DH K+VK++V
Sbjct: 364 GGKRQDGNGRDLHMFVWSSSASPVSDVFGGGGGNHHADYSTATNDHQKDVKISV 409

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy Swiss-Prot
Match: Q5SMQ9 (Auxin efflux carrier component 1a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1A PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-80
Identity = 177/279 (63.44%), Postives = 198/279 (70.97%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG+FSGSLMVQIVVLQCIIWYTLMLFMFE+RGAR LI+EQFPDTAA+I SI V+ DVVS
Sbjct: 124 MYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPDVVS 183

Query: 61  LDGRQ-VLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSL 120
           LDGR+  +ETE E+K+DG++HVTVRRSNASRSDI+SRRS G SS TPRPSNLTNAEIYSL
Sbjct: 184 LDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYSRRSMGFSSTTPRPSNLTNAEIYSL 243

Query: 121 QSSRNPTPRGSSFNHTDFYSMIGGGPVVAAAS-----RGPTPRPSNYEEEHHGGGGGKSG 180
           QSSRNPTPRGSSFNHTDFYSM+G      AA       G TPRPSNYE++        S 
Sbjct: 244 QSSRNPTPRGSSFNHTDFYSMVGRSSNFGAADAFGVRTGATPRPSNYEDD-------ASK 303

Query: 181 ARY-YYHGNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKD 240
            +Y     N+AP   HYP PN     P  S      KK+ TNGQA             +D
Sbjct: 304 PKYPLPASNAAPMAGHYPAPN-----PAVSSAPKGAKKAATNGQA-----------KGED 363

Query: 241 LHMFVWSSSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           LHMFVWSSSASPVSDVFG    GAP D+ +     SPRK
Sbjct: 364 LHMFVWSSSASPVSDVFGG---GAP-DYNDAAAVKSPRK 375

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy Swiss-Prot
Match: Q67UL3 (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1C PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.1e-79
Identity = 176/280 (62.86%), Postives = 201/280 (71.79%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG+FSGSLMVQIVVLQCIIWYTLMLFMFE+RGAR LI+EQFPDTA +I SI V++DVVS
Sbjct: 124 MYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDADVVS 183

Query: 61  LDGRQ-VLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSL 120
           LDGR+ ++ETEAE+K+DGK+HVTVRRSNASRSD++SRRS G SS TPRPSNLTNAEIYSL
Sbjct: 184 LDGRRDMIETEAEVKEDGKIHVTVRRSNASRSDVYSRRSMGFSSTTPRPSNLTNAEIYSL 243

Query: 121 QSSRNPTPRGSSFNHTDFYSMIGGGPVVAAAS-----RGPTPRPSNYEEEHHGGGGGKSG 180
           QSSRNPTPRGSSFNHTDFYSM+G     AA        G TPRPSNYEE+       K+G
Sbjct: 244 QSSRNPTPRGSSFNHTDFYSMVGRSSNFAAGDAFGVRTGATPRPSNYEED--AAAPNKAG 303

Query: 181 ARYYYHGNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDL 240
           ++Y            YP PN  M +P          K   NGQA           + KDL
Sbjct: 304 SKY----------GQYPAPNPAMAAP-------PKPKKAANGQA--------KGEDGKDL 363

Query: 241 HMFVWSSSASPVSDVFGS-HDYGAPHDHKEVKLAV-SPRK 273
           HMFVWSSSASPVSDVFG+  +Y      KEV++AV SPRK
Sbjct: 364 HMFVWSSSASPVSDVFGNGAEYNDAAAVKEVRMAVASPRK 376

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy Swiss-Prot
Match: Q8RWZ6 (Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.7e-62
Identity = 156/300 (52.00%), Postives = 189/300 (63.00%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG ++GSLMVQ+VVLQCIIWYTL+LF+FE+RGA+ LI EQFP+T ASIVS  VESDVVS
Sbjct: 124 MYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDG   LET+AEI +DGKLHVTVR+SNASR  +           TPRPSNLT AEIYSL 
Sbjct: 184 LDGHDFLETDAEIGNDGKLHVTVRKSNASRRSLMM---------TPRPSNLTGAEIYSLS 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIG--GGPV---------VAAASRGPTPRPSNYEEEHHGGG 180
           S    TPRGS+FNH+DFYS++G  GG +            +SRGPTPRPSN+EE      
Sbjct: 244 S----TPRGSNFNHSDFYSVMGFPGGRLSNFGPADLYSVQSSRGPTPRPSNFEE------ 303

Query: 181 GGKSGARYYYHGN---SAPAPPHYPTPNMGMFSPTGSRNVVSGK--KSTTNGQAGQYKMD 240
              +  +Y ++ N   S PA   YP PN    + TG    VS K  K     Q    + D
Sbjct: 304 --NNAVKYGFYNNTNSSVPAAGSYPAPNPEFSTGTG----VSTKPNKIPKENQQQLQEKD 363

Query: 241 ESNNNNNKDLHMFVWSSSASPVSDVFG----------SHDYGAPHDHKEVKLAVS--PRK 273
              +++ K+LHMFVWSSSASPVSDVFG            + GA    KE+++ VS  PRK
Sbjct: 364 SKASHDAKELHMFVWSSSASPVSDVFGGGAGDNVATEQSEQGA----KEIRMVVSDQPRK 394

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy Swiss-Prot
Match: Q9S7Z8 (Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.7e-61
Identity = 153/278 (55.04%), Postives = 183/278 (65.83%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG++SGSLMVQIVVLQCIIWYTL+LF+FEFRGA+ LI EQFP+TAASIVS  VESDVVS
Sbjct: 124 MYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDG   LET+AEI DDGKLHVTVR+SNA      SRRS    + TPRPSNLT AEIYSL 
Sbjct: 184 LDGHDFLETDAEIGDDGKLHVTVRKSNA------SRRSFCGPNMTPRPSNLTGAEIYSLS 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIG--GGPV---------VAAASRGPTPRPSNYEEEHHGGG 180
           +    TPRGS+FNH+DFY+M+G  GG +            +SRGPTPRPSN+EE      
Sbjct: 244 T----TPRGSNFNHSDFYNMMGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENCAMAS 303

Query: 181 GGKSGARYYYHGNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKS----TTNGQAGQYKMDE 240
             + G   YY G  A +   YP PN    S T S    S  K+     TN Q       +
Sbjct: 304 SPRFG---YYPGGGAGS---YPAPNPEFSSTTTSTANKSVNKNPKDVNTNQQTTLPTGGK 363

Query: 241 SNNNNNKDLHMFVWSSSASPVSDVFGSHDYGAPHDHKE 264
           SN+++ K+LHMFVWSS+ SPVSD  G + +G   D+ +
Sbjct: 364 SNSHDAKELHMFVWSSNGSPVSDRAGLNVFGGAPDNDQ 385

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy TrEMBL
Match: A0A5A7USK7 (Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004490 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 9.4e-143
Identity = 260/272 (95.59%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGP+  AASRGPTPR SNYEEEHHGGGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPLPGAASRGPTPRQSNYEEEHHGGGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GN A  PPHYPTPNMGMFSPTGSRNVVS KKS TNGQAGQYKMDESNNNNNKDLHMFVWS
Sbjct: 304 GNPAAVPPHYPTPNMGMFSPTGSRNVVSSKKSITNGQAGQYKMDESNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSASPVSDVFGSHDYGAPHDHK+VKL VSP K
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKDVKLNVSPGK 395

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy TrEMBL
Match: A0A5D3DY61 (Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001270 PE=3 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.7e-142
Identity = 259/272 (95.22%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGP+  AASRGPTPR SNYEEEHHGGGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPLPGAASRGPTPRQSNYEEEHHGGGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GN A  PPHYPTPNMGMFSPTGSRNVVS KKS +NGQAGQYKMDESNNNNNKDLHMFVWS
Sbjct: 304 GNPAAVPPHYPTPNMGMFSPTGSRNVVSSKKSISNGQAGQYKMDESNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSASPVSDVFGSHDYGAPHDHK+VKL VSP K
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKDVKLNVSPGK 395

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy TrEMBL
Match: A0A1S4DZF4 (Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103494181 PE=3 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.7e-142
Identity = 259/272 (95.22%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGP+  AASRGPTPR SNYEEEHHGGGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPLPGAASRGPTPRQSNYEEEHHGGGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GN A  PPHYPTPNMGMFSPTGSRNVVS KKS +NGQAGQYKMDESNNNNNKDLHMFVWS
Sbjct: 304 GNPAAVPPHYPTPNMGMFSPTGSRNVVSSKKSISNGQAGQYKMDESNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSASPVSDVFGSHDYGAPHDHK+VKL VSP K
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKDVKLNVSPGK 395

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy TrEMBL
Match: A0A0A0LPQ3 (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_1G025070 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 5.2e-141
Identity = 257/272 (94.49%), Postives = 261/272 (95.96%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGP+  AASRGPTPR SNYEEEHHGGGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPLPGAASRGPTPRQSNYEEEHHGGGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GN A  PPHYPTPNMGMFSPTGSRNVVS KKSTTNGQAGQYKMDE++N NNKDLHMFVWS
Sbjct: 304 GNPAGVPPHYPTPNMGMFSPTGSRNVVSSKKSTTNGQAGQYKMDENSNTNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSASPVSDVFGSHDY APHDHK+VKL VSP K
Sbjct: 364 SSASPVSDVFGSHDYAAPHDHKDVKLNVSPGK 395

[Close]

BLAST of Lsi06G012840.1 vs. ExPASy TrEMBL
Match: D7URM3 (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN3 PE=2 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 1.1e-135
Identity = 253/273 (92.67%), Postives = 256/273 (93.77%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGP-VVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYY 180
           SSRNPTPRGSSFNHTDFYSMI        AASRGPTPR SNYEEEHHGGGGGKSGARYYY
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIRRRTHFPGAASRGPTPRQSNYEEEHHGGGGGKSGARYYY 303

Query: 181 HGNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVW 240
           HGN A  PPHYPTPNMGMFSPTGSRNVVS KKSTTNGQAGQYKMDE++N NNKDLHMFVW
Sbjct: 304 HGNPAGVPPHYPTPNMGMFSPTGSRNVVSSKKSTTNGQAGQYKMDENSNTNNKDLHMFVW 363

Query: 241 SSSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSSASPVSDVFGSHDY APHDHK+VKL VSP K
Sbjct: 364 SSSASPVSDVFGSHDYAAPHDHKDVKLNVSPGK 396

[Close]

BLAST of Lsi06G012840.1 vs. NCBI nr
Match: XP_038878574.1 (probable auxin efflux carrier component 1c isoform X4 [Benincasa hispida])

HSP 1 Score: 518.8 bits (1335), Expect = 3.0e-143
Identity = 262/273 (95.97%), Postives = 263/273 (96.34%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGPV   ASRGPTPRPSNYEEEHH GGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPVPGVASRGPTPRPSNYEEEHH-GGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GNSAPAPPHYP PNMGMFSPTGSRNVVS KKST NGQ GQYKMD+SNNNNNKDLHMFVWS
Sbjct: 304 GNSAPAPPHYPAPNMGMFSPTGSRNVVSSKKSTANGQVGQYKMDDSNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRKG 274
           SSASPVSDVFGSHDYGAPHDHKEVKLAVSP  G
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPEGG 395

[Close]

BLAST of Lsi06G012840.1 vs. NCBI nr
Match: XP_038878573.1 (probable auxin efflux carrier component 1c isoform X3 [Benincasa hispida])

HSP 1 Score: 518.8 bits (1335), Expect = 3.0e-143
Identity = 262/273 (95.97%), Postives = 264/273 (96.70%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGPV   ASRGPTPRPSNYEEEHH GGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPVPGVASRGPTPRPSNYEEEHH-GGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GNSAPAPPHYP PNMGMFSPTGSRNVVS KKST NGQ GQYKMD+SNNNNNKDLHMFVWS
Sbjct: 304 GNSAPAPPHYPAPNMGMFSPTGSRNVVSSKKSTANGQVGQYKMDDSNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRKG 274
           SSASPVSDVFGSHDYGAPHDHKEVKLAVSP +G
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPVEG 395

[Close]

BLAST of Lsi06G012840.1 vs. NCBI nr
Match: XP_038878572.1 (probable auxin efflux carrier component 1c isoform X2 [Benincasa hispida])

HSP 1 Score: 518.5 bits (1334), Expect = 3.9e-143
Identity = 262/272 (96.32%), Postives = 263/272 (96.69%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGPV   ASRGPTPRPSNYEEEHH GGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPVPGVASRGPTPRPSNYEEEHH-GGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GNSAPAPPHYP PNMGMFSPTGSRNVVS KKST NGQ GQYKMD+SNNNNNKDLHMFVWS
Sbjct: 304 GNSAPAPPHYPAPNMGMFSPTGSRNVVSSKKSTANGQVGQYKMDDSNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSASPVSDVFGSHDYGAPHDHKEVKLAVSP K
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPGK 394

[Close]

BLAST of Lsi06G012840.1 vs. NCBI nr
Match: XP_038878571.1 (probable auxin efflux carrier component 1c isoform X1 [Benincasa hispida])

HSP 1 Score: 518.5 bits (1334), Expect = 3.9e-143
Identity = 262/272 (96.32%), Postives = 263/272 (96.69%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGPV   ASRGPTPRPSNYEEEHH GGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPVPGVASRGPTPRPSNYEEEHH-GGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GNSAPAPPHYP PNMGMFSPTGSRNVVS KKST NGQ GQYKMD+SNNNNNKDLHMFVWS
Sbjct: 304 GNSAPAPPHYPAPNMGMFSPTGSRNVVSSKKSTANGQVGQYKMDDSNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSASPVSDVFGSHDYGAPHDHKEVKLAVSP K
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPGK 394

[Close]

BLAST of Lsi06G012840.1 vs. NCBI nr
Match: KAA0058138.1 (putative auxin efflux carrier component 1c [Cucumis melo var. makuwa])

HSP 1 Score: 516.2 bits (1328), Expect = 1.9e-142
Identity = 260/272 (95.59%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS
Sbjct: 124 MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIGGGPVVAAASRGPTPRPSNYEEEHHGGGGGKSGARYYYH 180
           SSRNPTPRGSSFNHTDFYSMIGGGP+  AASRGPTPR SNYEEEHHGGGGGKSGARYYYH
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMIGGGPLPGAASRGPTPRQSNYEEEHHGGGGGKSGARYYYH 303

Query: 181 GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNNNNKDLHMFVWS 240
           GN A  PPHYPTPNMGMFSPTGSRNVVS KKS TNGQAGQYKMDESNNNNNKDLHMFVWS
Sbjct: 304 GNPAAVPPHYPTPNMGMFSPTGSRNVVSSKKSITNGQAGQYKMDESNNNNNKDLHMFVWS 363

Query: 241 SSASPVSDVFGSHDYGAPHDHKEVKLAVSPRK 273
           SSASPVSDVFGSHDYGAPHDHK+VKL VSP K
Sbjct: 364 SSASPVSDVFGSHDYGAPHDHKDVKLNVSPGK 395

[Close]

BLAST of Lsi06G012840.1 vs. TAIR 10
Match: AT1G73590.1 (Auxin efflux carrier family protein )

HSP 1 Score: 314.7 bits (805), Expect = 8.0e-86
Identity = 191/294 (64.97%), Postives = 215/294 (73.13%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG+FSG LMVQIVVLQCIIWYTLMLF+FE+RGA+ LISEQFPDTA SIVSIHV+SD++S
Sbjct: 124 MYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDGRQ LETEAEIK+DGKLHVTVRRSNASRSDI+SRRSQGLS+ TPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQPLETEAEIKEDGKLHVTVRRSNASRSDIYSRRSQGLSA-TPRPSNLTNAEIYSLQ 243

Query: 121 SSRNPTPRGSSFNHTDFYSMI---GG-----GPVVAA-ASRGPTPRPSNYEEEHHGG--- 180
           SSRNPTPRGSSFNHTDFYSM+   GG     GP  A   S+GPTPRPSNYEE+  GG   
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMMASGGGRNSNFGPGEAVFGSKGPTPRPSNYEED--GGPAK 303

Query: 181 ----GGGKSGARYYYH--GNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYK 240
               G      R++Y   G+      HYP PN GMFSP    N   G  +   G A    
Sbjct: 304 PTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSP----NTGGGGGTAAKGNA-PVV 363

Query: 241 MDESNNNNNKDLHMFVWSSSASPVSDVFGS------HDYG-APHDH-KEVKLAV 269
             +  + N +DLHMFVWSSSASPVSDVFG        DY  A +DH K+VK++V
Sbjct: 364 GGKRQDGNGRDLHMFVWSSSASPVSDVFGGGGGNHHADYSTATNDHQKDVKISV 409

[Close]

BLAST of Lsi06G012840.1 vs. TAIR 10
Match: AT2G01420.1 (Auxin efflux carrier family protein )

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-63
Identity = 156/300 (52.00%), Postives = 189/300 (63.00%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG ++GSLMVQ+VVLQCIIWYTL+LF+FE+RGA+ LI EQFP+T ASIVS  VESDVVS
Sbjct: 124 MYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDG   LET+AEI +DGKLHVTVR+SNASR  +           TPRPSNLT AEIYSL 
Sbjct: 184 LDGHDFLETDAEIGNDGKLHVTVRKSNASRRSLMM---------TPRPSNLTGAEIYSLS 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIG--GGPV---------VAAASRGPTPRPSNYEEEHHGGG 180
           S    TPRGS+FNH+DFYS++G  GG +            +SRGPTPRPSN+EE      
Sbjct: 244 S----TPRGSNFNHSDFYSVMGFPGGRLSNFGPADLYSVQSSRGPTPRPSNFEE------ 303

Query: 181 GGKSGARYYYHGN---SAPAPPHYPTPNMGMFSPTGSRNVVSGK--KSTTNGQAGQYKMD 240
              +  +Y ++ N   S PA   YP PN    + TG    VS K  K     Q    + D
Sbjct: 304 --NNAVKYGFYNNTNSSVPAAGSYPAPNPEFSTGTG----VSTKPNKIPKENQQQLQEKD 363

Query: 241 ESNNNNNKDLHMFVWSSSASPVSDVFG----------SHDYGAPHDHKEVKLAVS--PRK 273
              +++ K+LHMFVWSSSASPVSDVFG            + GA    KE+++ VS  PRK
Sbjct: 364 SKASHDAKELHMFVWSSSASPVSDVFGGGAGDNVATEQSEQGA----KEIRMVVSDQPRK 394

[Close]

BLAST of Lsi06G012840.1 vs. TAIR 10
Match: AT2G01420.2 (Auxin efflux carrier family protein )

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-63
Identity = 156/300 (52.00%), Postives = 189/300 (63.00%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG ++GSLMVQ+VVLQCIIWYTL+LF+FE+RGA+ LI EQFP+T ASIVS  VESDVVS
Sbjct: 124 MYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDG   LET+AEI +DGKLHVTVR+SNASR  +           TPRPSNLT AEIYSL 
Sbjct: 184 LDGHDFLETDAEIGNDGKLHVTVRKSNASRRSLMM---------TPRPSNLTGAEIYSLS 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIG--GGPV---------VAAASRGPTPRPSNYEEEHHGGG 180
           S    TPRGS+FNH+DFYS++G  GG +            +SRGPTPRPSN+EE      
Sbjct: 244 S----TPRGSNFNHSDFYSVMGFPGGRLSNFGPADLYSVQSSRGPTPRPSNFEE------ 303

Query: 181 GGKSGARYYYHGN---SAPAPPHYPTPNMGMFSPTGSRNVVSGK--KSTTNGQAGQYKMD 240
              +  +Y ++ N   S PA   YP PN    + TG    VS K  K     Q    + D
Sbjct: 304 --NNAVKYGFYNNTNSSVPAAGSYPAPNPEFSTGTG----VSTKPNKIPKENQQQLQEKD 363

Query: 241 ESNNNNNKDLHMFVWSSSASPVSDVFG----------SHDYGAPHDHKEVKLAVS--PRK 273
              +++ K+LHMFVWSSSASPVSDVFG            + GA    KE+++ VS  PRK
Sbjct: 364 SKASHDAKELHMFVWSSSASPVSDVFGGGAGDNVATEQSEQGA----KEIRMVVSDQPRK 394

[Close]

BLAST of Lsi06G012840.1 vs. TAIR 10
Match: AT1G70940.1 (Auxin efflux carrier family protein )

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-62
Identity = 153/278 (55.04%), Postives = 183/278 (65.83%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG++SGSLMVQIVVLQCIIWYTL+LF+FEFRGA+ LI EQFP+TAASIVS  VESDVVS
Sbjct: 124 MYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDG   LET+AEI DDGKLHVTVR+SNA      SRRS    + TPRPSNLT AEIYSL 
Sbjct: 184 LDGHDFLETDAEIGDDGKLHVTVRKSNA------SRRSFCGPNMTPRPSNLTGAEIYSLS 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIG--GGPV---------VAAASRGPTPRPSNYEEEHHGGG 180
           +    TPRGS+FNH+DFY+M+G  GG +            +SRGPTPRPSN+EE      
Sbjct: 244 T----TPRGSNFNHSDFYNMMGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENCAMAS 303

Query: 181 GGKSGARYYYHGNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKS----TTNGQAGQYKMDE 240
             + G   YY G  A +   YP PN    S T S    S  K+     TN Q       +
Sbjct: 304 SPRFG---YYPGGGAGS---YPAPNPEFSSTTTSTANKSVNKNPKDVNTNQQTTLPTGGK 363

Query: 241 SNNNNNKDLHMFVWSSSASPVSDVFGSHDYGAPHDHKE 264
           SN+++ K+LHMFVWSS+ SPVSD  G + +G   D+ +
Sbjct: 364 SNSHDAKELHMFVWSSNGSPVSDRAGLNVFGGAPDNDQ 385

[Close]

BLAST of Lsi06G012840.1 vs. TAIR 10
Match: AT1G23080.1 (Auxin efflux carrier family protein )

HSP 1 Score: 236.1 bits (601), Expect = 3.6e-62
Identity = 146/262 (55.73%), Postives = 176/262 (67.18%), Query Frame = 0


Query: 1   MYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARNLISEQFPDTAASIVSIHVESDVVS 60
           MYG++SGSLMVQIVVLQCIIWYTL+LF+FE+RGA+ LI EQFP+T ASIVS  VESDVVS
Sbjct: 124 MYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQFPETGASIVSFKVESDVVS 183

Query: 61  LDGRQVLETEAEIKDDGKLHVTVRRSNASRSDIFSRRSQGLSSGTPRPSNLTNAEIYSLQ 120
           LDG   LET+A+I DDGKLHVTVR+SNASR   +     G ++ TPRPSNLT AEIYSL 
Sbjct: 184 LDGHDFLETDAQIGDDGKLHVTVRKSNASRRSFY---GGGGTNMTPRPSNLTGAEIYSL- 243

Query: 121 SSRNPTPRGSSFNHTDFYSMIG--GGPV---------VAAASRGPTPRPSNYEEEHHGGG 180
              N TPRGS+FNH+DFYSM+G  GG +            +SRGPTPRPSN+EE      
Sbjct: 244 ---NTTPRGSNFNHSDFYSMMGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEESCAMAS 303

Query: 181 GGKSGARYYYHGNSAPAPPHYPTPNMGMFSPTGSRNVVSGKKSTTNGQAGQYKMDESNNN 240
             + G   YY G    AP  YP PN     P  S    +G K+    +   + + +SN+N
Sbjct: 304 SPRFG---YYPGG---APGSYPAPN-----PEFSTGNKTGSKAP---KENHHHVGKSNSN 363

Query: 241 NNKDLHMFVWSSSASPVSDVFG 252
           + K+LHMFVW S+ SPVSD  G
Sbjct: 364 DAKELHMFVWGSNGSPVSDRAG 364

The following BLAST results are available for this feature:

BLAST of Lsi06G012840.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6B8	1.1e-84	64.97	Auxin efflux carrier component 1 OS=Arabidopsis thaliana OX=3702 GN=PIN1 PE=1 SV...	[more]
Q5SMQ9	1.7e-80	63.44	Auxin efflux carrier component 1a OS=Oryza sativa subsp. japonica OX=39947 GN=PI...	[more]
Q67UL3	1.1e-79	62.86	Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39...	[more]
Q8RWZ6	2.7e-62	52.00	Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV...	[more]
Q9S7Z8	1.7e-61	55.04	Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV...	[more]

BLAST of Lsi06G012840.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7USK7	9.4e-143	95.59	Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DY61	2.7e-142	95.22	Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4DZF4	2.7e-142	95.22	Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103494181 PE=3 SV=1	[more]
A0A0A0LPQ3	5.2e-141	94.49	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_1G025070 PE=3 S...	[more]
D7URM3	1.1e-135	92.67	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN3 PE=2 SV=1	[more]

BLAST of Lsi06G012840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878574.1	3.0e-143	95.97	probable auxin efflux carrier component 1c isoform X4 [Benincasa hispida]	[more]
XP_038878573.1	3.0e-143	95.97	probable auxin efflux carrier component 1c isoform X3 [Benincasa hispida]	[more]
XP_038878572.1	3.9e-143	96.32	probable auxin efflux carrier component 1c isoform X2 [Benincasa hispida]	[more]
XP_038878571.1	3.9e-143	96.32	probable auxin efflux carrier component 1c isoform X1 [Benincasa hispida]	[more]
KAA0058138.1	1.9e-142	95.59	putative auxin efflux carrier component 1c [Cucumis melo var. makuwa]	[more]

BLAST of Lsi06G012840.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73590.1	8.0e-86	64.97	Auxin efflux carrier family protein	[more]
AT2G01420.1	1.9e-63	52.00	Auxin efflux carrier family protein	[more]
AT2G01420.2	1.9e-63	52.00	Auxin efflux carrier family protein	[more]
AT1G70940.1	1.2e-62	55.04	Auxin efflux carrier family protein	[more]
AT1G23080.1	3.6e-62	55.73	Auxin efflux carrier family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004776	Membrane transport protein	PFAM	PF03547	Mem_trans	coord: 1..124 e-value: 9.6E-47 score: 159.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..111
None	No IPR available	PANTHER	PTHR31752	AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED	coord: 1..260
None	No IPR available	PANTHER	PTHR31752:SF48	AUXIN EFFLUX CARRIER COMPONENT 1A	coord: 1..260

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G012840	Lsi06G012840	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G012840.1.exon.1	Lsi06G012840.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G012840.1.CDS.1	Lsi06G012840.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G012840.1	Lsi06G012840.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0010315	auxin efflux
biological_process	GO:0010252	auxin homeostasis
biological_process	GO:0009926	auxin polar transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0010329	auxin efflux transmembrane transporter activity