Lsi06G010330.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010330.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 20473064 .. 20474895 (-)
Sequence length	657
RNA-Seq Expression	Lsi06G010330.1
Synteny	Lsi06G010330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCAAGTCTATCAGCACATCCACAATAAAGATATCACTTATATTCCTAGTATGCGTTGCCATTTTGGCACCATCAACGACGGCTCACACGGTGGAAGCAGCACCTAGTCCATTTGTATTCGAAGATTTATCTTTCTCTAACTGCACACCCTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTGCTCATCCTTCTTGTTGCAAAGCCATTTCTGAGCTCAATGATTGCTCCTCCGAAATTTACCAACATATTCCCGGCATGGATGTGATTAAGAAATTTTGTGGTCAGTGAGGCATTTTTGGTTTTTAGGTTCTCTAAGCTAATTGAACCATGATTAATAATAAAGTTATATGATTTCTTTTTCCTACAGTACTATGTTGTTATAAATTTATGATGGAGAGTGAATGTTGTTGGAAGAAATTATGTTTCCTATGAATGAGAATGAACATTTCTCACCATTTGTTATGAAGGTCATTTTCAAAATGGTATTTAAAAATATATATATTCACAAAAAACAAAAAACAAAAAACCCAGAAAACAAAAATAGAAACAAAAATGTCTCAATGTATTCCACCTTCCGTCAAAATGTGAATTTTTCTGTTAGAGGAAGAGATTATTATAAACCATTGACTTGACCTTCCTGTGATTTTGTAATTTCTGCGTTGTTGCTCATTGAAATTATTGTTTAAGGTTGTGTAATTTGTGATTAATAATTTAATATGGTTAACCACATTATGTCTGTCCTTCTTTATACATAAGAGTCCGCTCTTACCAAACTAGTTTAATAGTAATTGACATGCACATTTTCTTTTGAAATTAGAGGTTTGATTAATCATTCATATAAATGTTGTGCTATAAAAATAATAAATTTCGCGTTAATTGACATTTACTACCTTATTTGTGGTTTGAGGTTCAAATCCCTGCTACCACATTGTTGTACAAAAAAAAATTCACTCCAACAAAAAAAAATTAATACATTTATTATTTTTGCCAAATTAGCAAAATCAATAAAAAATACCAAATGACTAAGATATCTCTTAAAACTATATGTTTTCCATCTCTATTAAATTTCTCATGACCCCCAAGAATTAAAACTATACTTTGCCATAAATATATATGTTGAGGTTTTTTTTTTTGAGCATGTATATATATTATCATCATCATTATGATTATGAATGTTTTTCATTAAAATTCAAAAGGAAAAAAAAATACTCCAAATGTAACTTGTAACAACATTATGATGCTATATTTACTCCAAATTAAGCCCAAATTTTTGTAACTCCAAAAAGTCCAAAGTTAACGTAAAAAGAATTGCAATTTTCATGGATGTCAAACGTTTCAAACTTCATATGTTTTCCTATATCTAATCTCCTTAGTCCCTAGTTTTCTCCCACAAACCAAACAAAGCTTTTCCTTGACCCTATTCAATCCTTCTCTTAACCTTCATACTCAATTTAGTACCAACGATGGCAGCATCAACCACCAAGTTACCACTAGTACTCCTACTTTGCTTTGCCATTTTAGCATCATCATCAATAACGGCTTGTTCAGAAACGGTGCCCGCAGCAGCACCTGATCCATCTGTAACGAAGGACTTCTCTTTATTCCCATGCATATCATTTGTTCCTGAGGCGACGGAATGTATGATTGATGTGCTTAAGCATGCAATTGTTCCTCATCCTTCTTGTTGCAAAGCCATTGCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGATATTCCCTCCTCCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTTTATTTCTTAG

mRNA sequence

ATGAAGACCAAGTCTATCAGCACATCCACAATAAAGATATCACTTATATTCCTAGTATGCGTTGCCATTTTGGCACCATCAACGACGGCTCACACGGTGGAAGCAGCACCTAGTCCATTTGTATTCGAAGATTTATCTTTCTCTAACTGCACACCCTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTGCTCATCCTTCTTGTTGCAAAGCCATTTCTGAGCTCAATGATTGCTCCTCCGAAATTTACCAACATATTCCCGGCATGGATGTGATTAAGAAATTTTGTGTACCAACGATGGCAGCATCAACCACCAAGTTACCACTAGTACTCCTACTTTGCTTTGCCATTTTAGCATCATCATCAATAACGGCTTGTTCAGAAACGGTGCCCGCAGCAGCACCTGATCCATCTGTAACGAAGGACTTCTCTTTATTCCCATGCATATCATTTGTTCCTGAGGCGACGGAATGTATGATTGATGTGCTTAAGCATGCAATTGTTCCTCATCCTTCTTGTTGCAAAGCCATTGCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGATATTCCCTCCTCCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTTTATTTCTTAG

Coding sequence (CDS)

ATGAAGACCAAGTCTATCAGCACATCCACAATAAAGATATCACTTATATTCCTAGTATGCGTTGCCATTTTGGCACCATCAACGACGGCTCACACGGTGGAAGCAGCACCTAGTCCATTTGTATTCGAAGATTTATCTTTCTCTAACTGCACACCCTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTCCAACTGGTGCTCATCCTTCTTGTTGCAAAGCCATTTCTGAGCTCAATGATTGCTCCTCCGAAATTTACCAACATATTCCCGGCATGGATGTGATTAAGAAATTTTGTGTACCAACGATGGCAGCATCAACCACCAAGTTACCACTAGTACTCCTACTTTGCTTTGCCATTTTAGCATCATCATCAATAACGGCTTGTTCAGAAACGGTGCCCGCAGCAGCACCTGATCCATCTGTAACGAAGGACTTCTCTTTATTCCCATGCATATCATTTGTTCCTGAGGCGACGGAATGTATGATTGATGTGCTTAAGCATGCAATTGTTCCTCATCCTTCTTGTTGCAAAGCCATTGCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGATATTCCCTCCTCCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTTTATTTCTTAG

Protein sequence

MKTKSISTSTIKISLIFLVCVAILAPSTTAHTVEAAPSPFVFEDLSFSNCTPFILDATMCVVSVIKLPTGAHPSCCKAISELNDCSSEIYQHIPGMDVIKKFCVPTMAASTTKLPLVLLLCFAILASSSITACSETVPAAAPDPSVTKDFSLFPCISFVPEATECMIDVLKHAIVPHPSCCKAIAKLYDCSSEFLKDIPSSDMILIKGVCAMWGVFIS

Homology

[Close]

BLAST of Lsi06G010330.1 vs. ExPASy TrEMBL
Match: A0A5A7U475 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00490 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 77/102 (75.49%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 2   KTKSISTSTIKISLIFLVCVAILAPSTTAHTVEAAPSPFVFEDLSFSNCTPFILDATMCV 61
           + + +ST  +KISL FLV +AILAPS TA TV AAPSP   EDLSFSNCTPFILDATMCV
Sbjct: 3   ENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCV 62

Query: 62  VSVIKLPTGAHPSCCKAISELNDCSSEIYQHIPGMDVIKKFC 104
           VSVIK P   HPSCCKAIS+LNDCS E+YQHIPGMDVIKK C
Sbjct: 63  VSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKIC 104

[Close]

BLAST of Lsi06G010330.1 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 4   KSISTSTIKISLIFLVCVAILAPSTTAHTVEAAPSPFVF---EDLSFSNCTPFILDATMC 63
           KS S STI+++L+FLVC+ ILAPS TAHT+  APSP +    +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLPTGAHPSCCKAISELNDCSSEIYQHIPGMDVIKKFC 104
           +V VIKLP   HPSCCKAIS+LNDC+ EIYQHIPGMDVIKK C
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKIC 107

[Close]

BLAST of Lsi06G010330.1 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-32
Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 109 ASTTKLPLVLLLCFAILASSSITACSETVPAAAPDPSVTKDFSLFPCISFVPEATECMID 168
           ++ TKLPLVLL+C AILA SS+TA    V AA P    ++DFSLFPCISFVP+AT+C+ID
Sbjct: 4   SAITKLPLVLLVCIAILA-SSVTARPTIVAAATP---TSEDFSLFPCISFVPKATKCVID 63

Query: 169 VLKHAIVPHPSCCKAIAKLYDCSSEFLKDIPSSDMILIKGVCAMWGVFIS 219
           VLK+A+ PHPSCC+AI++L+DCSS+FLKDIPSSDMIL+K +CA WGV IS
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Lsi06G010330.1 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-32
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 4   KSISTSTIKISLIFLVCVAILAPSTTAHTVEAAPSPFVF---EDLSFSNCTPFILDATMC 63
           KS S STI+++L+FLVC+ ILAPS TAHT+  APSP +    +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLPTGAHPSCCKAISELNDCSSEIYQHIPGMDVIKKFC 104
           +V VIKLP   HPSCCKAIS+LNDC+ EIY HIPGMDVIKK C
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKIC 107

[Close]

BLAST of Lsi06G010330.1 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.4e-32
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 109 ASTTKLPLVLLLCFAILASSSITACSETVPAAAPDPSVTKDFSLFPCISFVPEATECMID 168
           ++ TKLPLVL +C AILA SS+TAC   V AA P    ++DFSLFPCISFVP+AT+C+ID
Sbjct: 4   SAITKLPLVLRVCIAILA-SSVTACPTIVAAATP---TSEDFSLFPCISFVPKATKCVID 63

Query: 169 VLKHAIVPHPSCCKAIAKLYDCSSEFLKDIPSSDMILIKGVCAMWGVFIS 219
           VLK+ + PHPSCC+AI +L+DCSS+FLKDIPS DMIL+K +CA WGV IS
Sbjct: 64  VLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of Lsi06G010330.1 vs. NCBI nr
Match: KAA0050068.1 (hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-34
Identity = 77/102 (75.49%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 2   KTKSISTSTIKISLIFLVCVAILAPSTTAHTVEAAPSPFVFEDLSFSNCTPFILDATMCV 61
           + + +ST  +KISL FLV +AILAPS TA TV AAPSP   EDLSFSNCTPFILDATMCV
Sbjct: 3   ENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCV 62

Query: 62  VSVIKLPTGAHPSCCKAISELNDCSSEIYQHIPGMDVIKKFC 104
           VSVIK P   HPSCCKAIS+LNDCS E+YQHIPGMDVIKK C
Sbjct: 63  VSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKIC 104

[Close]

BLAST of Lsi06G010330.1 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-32
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 4   KSISTSTIKISLIFLVCVAILAPSTTAHTVEAAPSPFVF---EDLSFSNCTPFILDATMC 63
           KS S STI+++L+FLVC+ ILAPS TAHT+  APSP +    +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLPTGAHPSCCKAISELNDCSSEIYQHIPGMDVIKKFC 104
           +V VIKLP   HPSCCKAIS+LNDC+ EIYQHIPGMDVIKK C
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKIC 107

[Close]

BLAST of Lsi06G010330.1 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 7.8e-32
Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 109 ASTTKLPLVLLLCFAILASSSITACSETVPAAAPDPSVTKDFSLFPCISFVPEATECMID 168
           ++ TKLPLVLL+C AILA SS+TA    V AA P    ++DFSLFPCISFVP+AT+C+ID
Sbjct: 4   SAITKLPLVLLVCIAILA-SSVTARPTIVAAATP---TSEDFSLFPCISFVPKATKCVID 63

Query: 169 VLKHAIVPHPSCCKAIAKLYDCSSEFLKDIPSSDMILIKGVCAMWGVFIS 219
           VLK+A+ PHPSCC+AI++L+DCSS+FLKDIPSSDMIL+K +CA WGV IS
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Lsi06G010330.1 vs. NCBI nr
Match: KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-31
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 4   KSISTSTIKISLIFLVCVAILAPSTTAHTVEAAPSPFVF---EDLSFSNCTPFILDATMC 63
           KS S STI+++L+FLVC+ ILAPS TAHT+  APSP +    +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLPTGAHPSCCKAISELNDCSSEIYQHIPGMDVIKKFC 104
           +V VIKLP   HPSCCKAIS+LNDC+ EIY HIPGMDVIKK C
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKIC 107

[Close]

BLAST of Lsi06G010330.1 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-31
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 109 ASTTKLPLVLLLCFAILASSSITACSETVPAAAPDPSVTKDFSLFPCISFVPEATECMID 168
           ++ TKLPLVL +C AILA SS+TAC   V AA P    ++DFSLFPCISFVP+AT+C+ID
Sbjct: 4   SAITKLPLVLRVCIAILA-SSVTACPTIVAAATP---TSEDFSLFPCISFVPKATKCVID 63

Query: 169 VLKHAIVPHPSCCKAIAKLYDCSSEFLKDIPSSDMILIKGVCAMWGVFIS 219
           VLK+ + PHPSCC+AI +L+DCSS+FLKDIPS DMIL+K +CA WGV IS
Sbjct: 64  VLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

The following BLAST results are available for this feature:

BLAST of Lsi06G010330.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G010330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U475	2.4e-34	75.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CGL7	1.3e-32	69.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CFS6	3.8e-32	68.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4A7	4.9e-32	68.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9B0	8.4e-32	66.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lsi06G010330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050068.1	4.9e-34	75.49	hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]	[more]
TYK10344.1	2.7e-32	69.90	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]
TYK10345.1	7.8e-32	68.18	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050064.1	1.0e-31	68.93	hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]	[more]
KAA0050079.1	1.7e-31	66.36	hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi06G010330.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G010330	Lsi06G010330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G010330.1.exon.2	Lsi06G010330.1.exon.2	exon
Lsi06G010330.1.exon.1	Lsi06G010330.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G010330.1.CDS.2	Lsi06G010330.1.CDS.2	CDS
Lsi06G010330.1.CDS.1	Lsi06G010330.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G010330.1	Lsi06G010330.1-protein	polypeptide