Lsi06G008460.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G008460.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin-responsive protein
Location	chr06: 17819143 .. 17821667 (-)
Sequence length	703
RNA-Seq Expression	Lsi06G008460.1
Synteny	Lsi06G008460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTCATTGTGGCTCTAATGGAGTTCCCAACCGGGATGCATTAAACGAGAGTCGGTTGATGGATCTGCTCCATGGCTCTGAGTATGTACTCACCTATGAAGATAAGGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGTAAGTTCATTACTCAATTCATTTCTGTTGCACTAAGTAGTAGCTCTACTGCACTTCTTATAACTGGCTTGAAACTATTTCATTTACCAGTTCATCACTTTGGTTCCACTATTTCAACCCCCATGACTTCAAGAAAATTGATGTCTTTTCAAGTTTGGGAAATGAAAAAGAAATCAACATCATTGCAGTTTTTCTTTCTTTCGTTCATCCATGCTTTTTTCCCCAAAGTTTCTAATCTTTTGTTCTCTACCATTTCTTGGGTAATTAGAGGAATGTTCTTCTGACTGATTTATTAACCTGTCCTGTAACATTCAAGAAATTTTTGTTGTTTAAATCTCTAAATGACTGCTAATAAAAGAAGGTTTCATCATTATTTATCTTCTTCTTGTTACCTAATAGGATGTTCACTGAATCTTGCACAAGGATGAGGATCATGAAGAGTTCAGAGGCTATTGGGTTAGGTATGCTATGTTATGGACTTCAATAATTTCTTAATTTTGTTTTTCATTGTTACTAAATTTATCAGACAAGTTATAGTGGGATTTCATCTTCATGATTATAAGCATTGAGAATATGGGCCTTTGTTCAGTGCTCTCTTAGTTACCATCATTATCTCTCCACTTCAAAAGCTCTTTTTCTGAGAATTACTTAGCATCTTTCATTTTCATAAAGTTTGACCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCAAGAAAAAGATCTAACAATTAAAAACATAGCAGCAGTTTAAATTCCATTAGGATCGTATCTTTTCACAAAGTTCATCATAATCTGATGCTTTGGTCATTTGCATTATAAGGATGCTAATTCGTGATATGGATTGAGCAATATCTTATAAAGAGATGGAATCAGAATAAAAAGTTACCCCCCCCAAATAATAATAATAAAAGTTCTCTTGTGACCCCATTAGTAAAAGCTTGGTCTTTTCTCTCTTTCTTTTTCTTGCAGCTCCAAGGGCCATGGAGAAATGCAAAAACCGTAATTAGCAAACGCTTTTGCTATATCGATGCATCAATCACGCACGTTAGAGCAAATGACGTTTGAAGTAAACGTATAATCTGCCTGCTGGAAGCGTAGATCAATCGAGAGAATCTTTACTGAGTATTGTGTTGTTCTTTGTGCATGAGTTCGAAATATTGGAGAGTTGATGTATCAAGATAACTTCTTTGTTGGCAAAGATGATTTTCAATAGGACGATTCACAAGTTTATTAGTTTGGCCCCTTCCCCCACCTTTCTTTGTGATTTTACTTGGGTTGTTGTTGCTACACTTTTACTTTGTATTGTAAATGGTTTGTTTGCTATGCCAAATGTATCCCTCACCCTTCATATCTGCCTGCTTCCTCCTCCCCTTTGCTTCTTGTTGTGGCTGTTGAAAGCTTCCAAAAGAGAGTTGAATTATACTGATACCTTTTATTATTTATTTCCATGTCTTCTATTTC

mRNA sequence

ATGTCAGGTCATTGTGGCTCTAATGGAGTTCCCAACCGGGATGCATTAAACGAGAGTCGGTTGATGGATCTGCTCCATGGCTCTGAGTATGTACTCACCTATGAAGATAAGGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTCACTGAATCTTGCACAAGGATGAGGATCATGAAGAGTTCAGAGGCTATTGGGTTAGCTCCAAGGGCCATGGAGAAATGCAAAAACCGTAATTAGCAAACGCTTTTGCTATATCGATGCATCAATCACGCACGTTAGAGCAAATGACGTTTGAAGTAAACGTATAATCTGCCTGCTGGAAGCGTAGATCAATCGAGAGAATCTTTACTGAGTATTGTGTTGTTCTTTGTGCATGAGTTCGAAATATTGGAGAGTTGATGTATCAAGATAACTTCTTTGTTGGCAAAGATGATTTTCAATAGGACGATTCACAAGTTTATTAGTTTGGCCCCTTCCCCCACCTTTCTTTGTGATTTTACTTGGGTTGTTGTTGCTACACTTTTACTTTGTATTGTAAATGGTTTGTTTGCTATGCCAAATGTATCCCTCACCCTTCATATCTGCCTGCTTCCTCCTCCCCTTTGCTTCTTGTTGTGGCTGTTGAAAGCTTCCAAAAGAGAGTTGAATTATACTGATACCTTTTATTATTTATTTCCATGTCTTCTATTTC

Coding sequence (CDS)

ATGTCAGGTCATTGTGGCTCTAATGGAGTTCCCAACCGGGATGCATTAAACGAGAGTCGGTTGATGGATCTGCTCCATGGCTCTGAGTATGTACTCACCTATGAAGATAAGGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTCACTGAATCTTGCACAAGGATGAGGATCATGAAGAGTTCAGAGGCTATTGGGTTAGCTCCAAGGGCCATGGAGAAATGCAAAAACCGTAATTAG

Protein sequence

MSGHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNRN

Homology

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy Swiss-Prot
Match: P0C132 (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.8e-31
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G+CGS+GV   + +NES++ DLL+GSEYV TYEDKDGDWMLVGDVPWEMF ESC R+RIM
Sbjct: 201 GNCGSHGV---NGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 260

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           K SEAIGLAPRAMEKCKNR+
Sbjct: 261 KGSEAIGLAPRAMEKCKNRS 277

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy Swiss-Prot
Match: Q9ZSY8 (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-29
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G  GS+G   RD LNESRL DLL GSEYV+TYEDKD DWMLVGDVPWEMF  SC ++RIM
Sbjct: 226 GQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIM 285

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPR MEKC++RN
Sbjct: 286 KSSEAIGLAPRVMEKCRSRN 305

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy Swiss-Prot
Match: O24407 (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-28
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G+ G  G+  +D +NES+L+DLL+GS+YV TYEDKDGDWMLVGDVPWEMF +SC R+RIM
Sbjct: 159 GNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIM 218

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           K SEAIGLAPRA+EKCKNR+
Sbjct: 219 KGSEAIGLAPRALEKCKNRS 236

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy Swiss-Prot
Match: Q5Z749 (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-27
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GH  SNG   RD L++ RLMDL +G+E VLTYEDKD DWMLVGDVPW MFT+SC R+RIM
Sbjct: 187 GHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIM 246

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           K S+A+GLAPRA +K KNRN
Sbjct: 247 KGSDAVGLAPRATDKSKNRN 266

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy Swiss-Prot
Match: Q38826 (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-27
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G CG +G   R+ ++E +L DLLHGSE+VLTYEDKDGDWMLVGDVPWE+FTE+C +++IM
Sbjct: 240 GQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIM 299

Query: 63  KSSEAIGLAPRAMEKCKNR 82
           K S++IGLAP A+EK KN+
Sbjct: 300 KGSDSIGLAPGAVEKSKNK 318

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy TrEMBL
Match: A0A5D3BFM3 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00160 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.1e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 228 GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 287

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKCKNRN
Sbjct: 288 KSSEAIGLAPRAMEKCKNRN 307

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy TrEMBL
Match: A0A1S3CHQ1 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103501033 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.1e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 228 GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 287

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKCKNRN
Sbjct: 288 KSSEAIGLAPRAMEKCKNRN 307

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy TrEMBL
Match: A0A6J1CTT1 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014504 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 227 GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 286

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAM KCKNRN
Sbjct: 287 KSSEAIGLAPRAMAKCKNRN 306

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy TrEMBL
Match: A0A6J1JBD0 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485238 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNG PNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 227 GHCGSNGFPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 286

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKC+NRN
Sbjct: 287 KSSEAIGLAPRAMEKCRNRN 306

[Close]

BLAST of Lsi06G008460.1 vs. ExPASy TrEMBL
Match: A0A6J1HA29 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461851 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNG PNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 227 GHCGSNGFPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 286

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKC+NRN
Sbjct: 287 KSSEAIGLAPRAMEKCRNRN 306

[Close]

BLAST of Lsi06G008460.1 vs. NCBI nr
Match: TYJ98063.1 (auxin-responsive protein IAA27 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 8.5e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 228 GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 287

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKCKNRN
Sbjct: 288 KSSEAIGLAPRAMEKCKNRN 307

[Close]

BLAST of Lsi06G008460.1 vs. NCBI nr
Match: XP_008462746.1 (PREDICTED: auxin-responsive protein IAA27 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 8.5e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 228 GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 287

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKCKNRN
Sbjct: 288 KSSEAIGLAPRAMEKCKNRN 307

[Close]

BLAST of Lsi06G008460.1 vs. NCBI nr
Match: XP_038879206.1 (auxin-responsive protein IAA27 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 8.5e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 228 GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 287

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKCKNRN
Sbjct: 288 KSSEAIGLAPRAMEKCKNRN 307

[Close]

BLAST of Lsi06G008460.1 vs. NCBI nr
Match: XP_022144958.1 (auxin-responsive protein IAA27-like [Momordica charantia] >XP_022144959.1 auxin-responsive protein IAA27-like [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 4.2e-39
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 227 GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 286

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAM KCKNRN
Sbjct: 287 KSSEAIGLAPRAMAKCKNRN 306

[Close]

BLAST of Lsi06G008460.1 vs. NCBI nr
Match: KAG6589929.1 (Auxin-responsive protein IAA27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023598.1 Auxin-responsive protein IAA27 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.2 bits (430), Expect = 7.2e-39
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           GHCGSNG PNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM
Sbjct: 227 GHCGSNGFPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 286

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPRAMEKC+NRN
Sbjct: 287 KSSEAIGLAPRAMEKCRNRN 306

[Close]

BLAST of Lsi06G008460.1 vs. TAIR 10
Match: AT4G29080.1 (phytochrome-associated protein 2 )

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-30
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G  GS+G   RD LNESRL DLL GSEYV+TYEDKD DWMLVGDVPWEMF  SC ++RIM
Sbjct: 226 GQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIM 285

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           KSSEAIGLAPR MEKC++RN
Sbjct: 286 KSSEAIGLAPRVMEKCRSRN 305

[Close]

BLAST of Lsi06G008460.1 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-29
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G+ G  G+  +D +NES+L+DLL+GS+YV TYEDKDGDWMLVGDVPWEMF +SC R+RIM
Sbjct: 159 GNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIM 218

Query: 63  KSSEAIGLAPRAMEKCKNRN 83
           K SEAIGLAPRA+EKCKNR+
Sbjct: 219 KGSEAIGLAPRALEKCKNRS 236

[Close]

BLAST of Lsi06G008460.1 vs. TAIR 10
Match: AT5G65670.2 (indole-3-acetic acid inducible 9 )

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-28
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G CGSNG   +D L+E++L DLL+G +YVLTYEDKDGDWMLVGDVPWEMF + C +++IM
Sbjct: 257 GQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIM 316

Query: 63  KSSEAIGLAPRAMEKCKNR 82
           K  +AIGLAPRAMEK K R
Sbjct: 317 KGCDAIGLAPRAMEKSKMR 335

[Close]

BLAST of Lsi06G008460.1 vs. TAIR 10
Match: AT2G22670.1 (indoleacetic acid-induced protein 8 )

HSP 1 Score: 121.7 bits (304), Expect = 2.7e-28
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G CG +G   R+ ++E +L DLLHGSE+VLTYEDKDGDWMLVGDVPWE+FTE+C +++IM
Sbjct: 240 GQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIM 299

Query: 63  KSSEAIGLAPRAMEKCKNR 82
           K S++IGLAP A+EK KN+
Sbjct: 300 KGSDSIGLAPGAVEKSKNK 318

[Close]

BLAST of Lsi06G008460.1 vs. TAIR 10
Match: AT2G22670.3 (indoleacetic acid-induced protein 8 )

HSP 1 Score: 121.7 bits (304), Expect = 2.7e-28
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3   GHCGSNGVPNRDALNESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIM 62
           G CG +G   R+ ++E +L DLLHGSE+VLTYEDKDGDWMLVGDVPWE+FTE+C +++IM
Sbjct: 240 GQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIM 299

Query: 63  KSSEAIGLAPRAMEKCKNR 82
           K S++IGLAP A+EK KN+
Sbjct: 300 KGSDSIGLAPGAVEKSKNK 318

The following BLAST results are available for this feature:

BLAST of Lsi06G008460.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C132	9.8e-31	77.50	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30...	[more]
Q9ZSY8	1.4e-29	76.25	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=...	[more]
O24407	2.0e-28	72.50	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=...	[more]
Q5Z749	2.9e-27	70.00	Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21...	[more]
Q38826	3.8e-27	65.82	Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1	[more]

BLAST of Lsi06G008460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFM3	4.1e-40	100.00	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CHQ1	4.1e-40	100.00	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103501033 PE=3 SV=1	[more]
A0A6J1CTT1	2.0e-39	98.75	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014504 PE=3 SV=...	[more]
A0A6J1JBD0	3.5e-39	97.50	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485238 PE=3 SV=1	[more]
A0A6J1HA29	3.5e-39	97.50	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461851 PE=3 SV=1	[more]

BLAST of Lsi06G008460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98063.1	8.5e-40	100.00	auxin-responsive protein IAA27 [Cucumis melo var. makuwa]	[more]
XP_008462746.1	8.5e-40	100.00	PREDICTED: auxin-responsive protein IAA27 [Cucumis melo]	[more]
XP_038879206.1	8.5e-40	100.00	auxin-responsive protein IAA27 [Benincasa hispida]	[more]
XP_022144958.1	4.2e-39	98.75	auxin-responsive protein IAA27-like [Momordica charantia] >XP_022144959.1 auxin-...	[more]
KAG6589929.1	7.2e-39	97.50	Auxin-responsive protein IAA27, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]

BLAST of Lsi06G008460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29080.1	1.0e-30	76.25	phytochrome-associated protein 2	[more]
AT3G04730.1	1.4e-29	72.50	indoleacetic acid-induced protein 16	[more]
AT5G65670.2	1.2e-28	68.35	indole-3-acetic acid inducible 9	[more]
AT2G22670.1	2.7e-28	65.82	indoleacetic acid-induced protein 8	[more]
AT2G22670.3	2.7e-28	65.82	indoleacetic acid-induced protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 2..73 e-value: 2.1E-38 score: 132.5
None	No IPR available	GENE3D	3.10.20.90		coord: 7..76 e-value: 9.1E-24 score: 85.4
None	No IPR available	PANTHER	PTHR31734:SF150	AUXIN-RESPONSIVE PROTEIN IAA27	coord: 3..75
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 23..63
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 3..75
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 1..64 score: 13.722666

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G008460	Lsi06G008460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G008460.1.exon.3	Lsi06G008460.1.exon.3	exon
Lsi06G008460.1.exon.2	Lsi06G008460.1.exon.2	exon
Lsi06G008460.1.exon.1	Lsi06G008460.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G008460.1.three_prime_UTR.1	Lsi06G008460.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G008460.1.CDS.3	Lsi06G008460.1.CDS.3	CDS
Lsi06G008460.1.CDS.2	Lsi06G008460.1.CDS.2	CDS
Lsi06G008460.1.CDS.1	Lsi06G008460.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G008460.1	Lsi06G008460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding