Lsi06G008310.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G008310.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	TF-B3 domain-containing protein
Location	chr06: 17619256 .. 17622513 (-)
Sequence length	552
RNA-Seq Expression	Lsi06G008310.1
Synteny	Lsi06G008310.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAGGTACGTTACACATACAATAATAAAATAGTTGAGAAGGATGTTTACGAAAGTGCTTCGATTATTTACGACATGAATAGCGTGAAGCAATCGAGTTTTGGCGACGAAAGTTGTAACGTTGTTAGAAAGTGTATCTGTCCACGAGTAATGCGTGGGAATTTATGCCCACGAATTTTGTTGCGCGGGCAGAAAACGATTTTGTTAGTTGCGTGGCCAGAAAGACTTTTATGCCCACGTGTTTTATTACGTGAGCATTTCTGCCGACGCAACGTCAAAATGCGTGGCAGAAGCTCTGCCCACGCAAAAAAAGTCGATAGAGGTTTTTTCCACACTTGTAGGAGGATCCGCTGACGTTTTCTTGCATGCGTAGAGACAAAAATGCTTGTAGTGAAAATAACTAATATTTACGTCTTCCACTATGTTATTTAATTGATTTATAATATTTTATAGTCTCATTTATAGATGCCCACTTTTCCATGAGGACGGGCCCGCCGTGATCCAGCCTGAATGGGGCAGAAATTTCCATTTAGGCGCGAAATGAGGGAGAGAGTGAGAAAAAAATTTCCGAAAAGCTAAATGGGGACAAGGACGGGGATGGACCCCATTTCATGTCCTCGCCTTGTTAGACTTTTTTTTTCTTATATTTATTATAATAATTTAATATTGTCTTATTTATTTTTATTATACAAATATTATATTTAATTTTAAAGTGTTATTGTTTTATAGTCAAAATAATGAATATGTTTGAATTAGCGTAAAAAGATAGGTTTAAATTCTAATAAATTTAGATTATATATATAAATAATTTAATAAATATTTATTTCCTACAACTTGAAAATTTTGAATAATTTTCTCTTTAAATTATAATTGTTTACTTGGAACTAATCATATAAAAGTTAACCATTTAATTGAAATTTTTTCATAATAATGATTTATGTTAATTGATTTTTTTTAAAAGTCAAATAGAAAAAATTCTCGAGGAATCCACGCCCCGAATTTGGCGGGATGGGGAGCGGGGAAGCAATTTACTGGCCTGTCCTGCCCTATAAACATCTCTAGTCTCAAGAAAACTTTCGTTTAGAACGCACGGAAAGAAACAAAAGGGGCAGTCTCTCTCTCATCCACTAGCCTCCGACCGCCACATGTCCGCCAATGAGTGTTTTCCGTCCCTACCCACTTCTCCGTCCGTCTCTCTCAAACTCGCTCTTTATTCAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCGTATTGATCCTACCGTGGGTGAAAGTTTGGTGAGTTTCTCTCATGGTTTTCTTGTTTAATCTTGAATACTCAAAACATATGGAAAGATAGATCTATCTTTATGCATCTCACTTACATCACTTATAAAAATAATTCAAATATTTAAAAAAAGAAATTAGAAGAATTTTCTACATGAATTTGATAGGATGCACAAATTTAAATACTACTCAAGATGTACTCAAATATTTTTTTTTATTTTAGTATATAAATTTTAGGTTTTTAATGAATAAAATGCAAGTGAATCTATTTTTTTTTTTTTTTTTAATATATAAGGTGGAGTATGAAACACCTAACCTTGAAGTCAAAACTTTAAGTTTGTTGAGCGGCTATTATCTTTAGAGCAGCTTCATCATTATAGTGTATAAATTTTAGGTCAAATTAAAATTGTAGTTTAAAAATTAGAATTAATCTCTAAAATTTGATAAAAATTCCAAAAACTATTTATGAAAGTTGTATTAAATAAAGCAGAACTAAAATTTAACTTCCTCCAAAATTATATTTTAAGGTAAATTTTATGTTTGTTTGTTGGTTACAAAATATTGTTAATTTTGATCTCATCACGGGTAAAACACGGTTGAATGGTAATAAGAAAGTGTCTAATGATGTGCACAAAACAACTTCAACTCTTTGTGTTATGAGAAGAAGTGAGGAAGTATTTAAGGCATTGGAGCCAACATGTCATTTCACATATCATCAGAGAAGATATAGGAAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAGCTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGGCGATTGACACTTAAAAAAAATTTGTTATATGTCATTTGGCTCCCATGTTCAATGACAGCGAGAACCTGAGTGAGGGAATTGATGTTATAGTTTTTTATAGTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGACCAATAATTTAACTCAACCTGGTGAATACATCACCGTTTGGATGTTTCGATATATCGATCTTCACAAACTTTGCTTGCTATTACTCGAGGAAGAGTTGAAGGGCATTGAGCTTCTCTCGACCTCCTCCATCTTTGCATCTTGGCCCATTGGACTACTTTCTTTTTTAATTATTATTCTTTTTTAAAATAATTCCTCATTTTTTTTAAGTCGATAAATATTGTGGGGTGAACATTATTTTTTTTTTTTTAATGTTTTACTTTAAATTTTTAGTTCATCATTACTAGTTTCAAATCTTTGAGCTAGTCAGGATATTTGTTTATTTCAATTCAGCTATTCTAATTGTTATGTTCTTTTCTTTTTTATTTTTTTTTTTTTAATGTTTTACTTTAAATTTTTAGTTCAACATTACTAGTTTCAAATCTTTGAGCTAGTCAAGGATATTTGTTTATTTCAATTCAGCTATTCTAATTGTTATTTTCTTTTCTTTTTTATTTTTTTTATTAATATATAAGTGATTTTTCGCCTATTTCTTTAATTTGTTATTAATTTAGTACCATACTTTTACTTAAGTTTATTTTAAATAGTAAATTGATTCGCTTATAAAAGTTAAGATCTTTTAATTACGAATTTAGTACTATACTTTTTACTTAAGTTTATTTTAAATAGTAAATTGATTCACTCATAAAAGTTAAGATTTTTTAATTAAAAATTTAAGATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTTAA

mRNA sequence

ATGGTTAAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCAGAAGATATAGGAAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAGCTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGGCGATTGACACTTAAAAAAAATTTTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGACCAATAATTTAACTCAACCTGGTGAATACATCACCATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTTAA

Coding sequence (CDS)

ATGGTTAAGTTTTTGCCATTGTCGCCCGTCCCCGACGCCTTCTCTACCATGAGCAGCCGTTTCGTTGAGCACATGGACACTGCCGCCAGACTGCCACCAGAAGATATAGGAAATCAATTTCCAGGTTTAACTTCAACTTCCACTTCCATAGTCAACGAACAACCTCTCAAACTCAACGACAATGAAAATGCAACCTTGGAGTTGGCGGAATTTGGTGGAGCTCCCACGATAATAATGCCACCGATGCCGGCGATCGTGAACATAATCAAAACGTGTAGCCCACTGTTTTCGAAGCAAATGACAAAAGCTGACTTGGCAGATGGACAAGGGCGATTGACACTTAAAAAAAATTTTGAACGAAGAGAATACGACATGACGTTCAAGGTTTGGACTTCTAAATTTTATGTGCTCATGAAAGGTTGGAAGGAGTTTTACAAGACCAATAATTTAACTCAACCTGGTGAATACATCACCATTTTAATTGATGTAGCCATTAATTTCAGTGGTTACGTATTTTCCTTTAATGATAGAGGTTTAAATTCAATCACTTAA

Protein sequence

MVKFLPLSPVPDAFSTMSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNFERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSGYVFSFNDRGLNSIT

Homology

[Close]

BLAST of Lsi06G008310.1 vs. ExPASy TrEMBL
Match: A0A0A0L7L0 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.9e-22
Identity = 74/170 (43.53%), Postives = 86/170 (50.59%), Query Frame = 0


Query: 32  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAP 91
           P +   NQ   L+STSTS+VNEQ              L  ND++N   E    A   G  
Sbjct: 39  PIDRFNNQ---LSSTSTSLVNEQSPVVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRD 98

Query: 92  TIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF----------------- 151
               PPM  I NII  CSP F KQ+TK D+ D QGRL L K F                 
Sbjct: 99  QGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLED 158

Query: 152 ---------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
                    E REYDM FK+W SK YVL K WKEFYKTN+LTQPGE+I++
Sbjct: 159 GISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTNDLTQPGEFISV 205

[Close]

BLAST of Lsi06G008310.1 vs. ExPASy TrEMBL
Match: A0A5D3BAS8 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00040 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.1e-20
Identity = 69/171 (40.35%), Postives = 81/171 (47.37%), Query Frame = 0


Query: 33  PEDIGNQFPGLTSTS-----TSIVNEQP-------------LKLNDNENATLELAEFGGA 92
           P +  NQFP  TS S       +VNEQP             L  N+N N     A     
Sbjct: 33  PFEEPNQFPSSTSISMVDDQPPVVNEQPPIVNEHAPVVNEALLNNNNNNNENVAAVVADR 92

Query: 93  PTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF---------------- 152
               +PPM  I NII  CSP F KQ+TK D+ D QGRL L K F                
Sbjct: 93  DLGRLPPMAVIQNIIGECSPPFVKQLTKTDVTDSQGRLALHKEFVNRNLVPMFNGDEILT 152

Query: 153 ----------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
                     E REYDMTF++WTSK YVL K WK+FY  N LT+P E+IT+
Sbjct: 153 NGISVTVYDSEGREYDMTFRLWTSKLYVLTKSWKKFYHDNGLTRPDEFITL 203

[Close]

BLAST of Lsi06G008310.1 vs. ExPASy TrEMBL
Match: A0A0A0LC65 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 82  MPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF----------------------- 141
           M  I NII  CSP F KQ+ K D+ + QGRL L K F                       
Sbjct: 1   MAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTV 60

Query: 142 ---ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
              E REYDM FK WTSK YVL K W +FYK+NNLT+PGE+I++
Sbjct: 61  YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISV 104

[Close]

BLAST of Lsi06G008310.1 vs. ExPASy TrEMBL
Match: A0A6J1CTE7 (putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 GN=LOC111014582 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-13
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 79  MPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF-------------------- 138
           MPP+PAI ++I  CS  + K++T +D+A+ QGRL + K F                    
Sbjct: 108 MPPVPAIRDVIGQCSRAYEKRLTVSDVAEAQGRLAIGKEFVTKYLAPMFNNKDENENLRE 167

Query: 139 ---------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLT--QPGEYITI 160
                    E RE+ MTFK+W SK YVLMKGWK F K NNLT    GE++T+
Sbjct: 168 GIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTL 219

[Close]

BLAST of Lsi06G008310.1 vs. ExPASy TrEMBL
Match: A0A067L9U6 (TF-B3 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_15047 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-10
Identity = 56/190 (29.47%), Postives = 80/190 (42.11%), Query Frame = 0


Query: 17  MSSRFVEHMDTAARLPPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGGAPT 76
           M S F+ H  ++    P+     FPG    S +I+ +    L     + L+L      P 
Sbjct: 38  MKSNFLNHRPSSLTSQPQ--VQDFPG----SRAIIRQ----LTGQPRSLLQLKIDNYRPA 97

Query: 77  IIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF------------------ 136
            I PP+  +   I  CS  F KQ+T +D+   Q RLTL K +                  
Sbjct: 98  DI-PPIAKLKGQIGRCSKPFEKQLTSSDVRSDQSRLTLNKAYVERSILPLLNREEGNLDD 157

Query: 137 ---------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITILIDVAINFSG 180
                    E  EY MT K+W SK YVLM GWKEFY+   L +  +++T      +    
Sbjct: 158 GIKVTIYDPEGNEYPMTLKMWASKVYVLMGGWKEFYQKQKLRENEDFVTTWFFYNVRTRK 216

[Close]

BLAST of Lsi06G008310.1 vs. NCBI nr
Match: KGN56101.1 (hypothetical protein Csa_010492 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 8.0e-22
Identity = 74/170 (43.53%), Postives = 86/170 (50.59%), Query Frame = 0


Query: 32  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLE---LAEFGGAP 91
           P +   NQ   L+STSTS+VNEQ              L  ND++N   E    A   G  
Sbjct: 39  PIDRFNNQ---LSSTSTSLVNEQSPVVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRD 98

Query: 92  TIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF----------------- 151
               PPM  I NII  CSP F KQ+TK D+ D QGRL L K F                 
Sbjct: 99  QGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLED 158

Query: 152 ---------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
                    E REYDM FK+W SK YVL K WKEFYKTN+LTQPGE+I++
Sbjct: 159 GISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTNDLTQPGEFISV 205

[Close]

BLAST of Lsi06G008310.1 vs. NCBI nr
Match: XP_031736688.1 (uncharacterized protein LOC116402065 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-20
Identity = 68/167 (40.72%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 32  PPEDIGNQFPGLTSTSTSIVNEQP-------------LKLNDNENATLELAEFGGAPTII 91
           P   + N+F   +STS SI+N+QP             L  N+NEN  + +A   G     
Sbjct: 39  PVTRLNNRFS--SSTSISILNKQPPILIERAPIVNEALPNNNNENVAVAVA---GRDWGR 98

Query: 92  MPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF-------------------- 151
           +PPM  I NII  CSP F KQ+ K D+ + QGRL L K F                    
Sbjct: 99  VPPMAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGIS 158

Query: 152 ------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
                 E REYDM FK WTSK YVL K W +FYK+NNLT+PGE+I++
Sbjct: 159 VTVYDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISV 200

[Close]

BLAST of Lsi06G008310.1 vs. NCBI nr
Match: KAA0043114.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYJ96217.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-19
Identity = 69/171 (40.35%), Postives = 81/171 (47.37%), Query Frame = 0


Query: 33  PEDIGNQFPGLTSTS-----TSIVNEQP-------------LKLNDNENATLELAEFGGA 92
           P +  NQFP  TS S       +VNEQP             L  N+N N     A     
Sbjct: 33  PFEEPNQFPSSTSISMVDDQPPVVNEQPPIVNEHAPVVNEALLNNNNNNNENVAAVVADR 92

Query: 93  PTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQGRLTLKKNF---------------- 152
               +PPM  I NII  CSP F KQ+TK D+ D QGRL L K F                
Sbjct: 93  DLGRLPPMAVIQNIIGECSPPFVKQLTKTDVTDSQGRLALHKEFVNRNLVPMFNGDEILT 152

Query: 153 ----------ERREYDMTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
                     E REYDMTF++WTSK YVL K WK+FY  N LT+P E+IT+
Sbjct: 153 NGISVTVYDSEGREYDMTFRLWTSKLYVLTKSWKKFYHDNGLTRPDEFITL 203

[Close]

BLAST of Lsi06G008310.1 vs. NCBI nr
Match: KAG6589940.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 6.3e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 32  PPEDIGNQFPGLTSTSTSIVNEQPLKLNDNENATLELAEFGG-APTIIMPPMPAIVNIIK 91
           P      Q  G TS      NE P  +N +E+  LE+ E       +++P +  I+NII 
Sbjct: 36  PSYSSDEQVSGSTSGDMDDENEAP-SINGDEDVALEVEEVAEVVAPVVIPALAVIMNIIG 95

Query: 92  TCSPLFSKQMTKADLADGQGRLTLKKNF--------------------------ERREYD 151
             SP + K++TK+D+++GQGRL ++K F                          E R+YD
Sbjct: 96  ARSPPWEKRLTKSDVSEGQGRLIVRKEFVTNHLLPMFNADEDPSEGIDVTVYNGEGRQYD 155

Query: 152 MTFKVWTSKFYVLMKGWKEFYKTNNLTQPGEYITI 160
           M FK+W SK YVL KGW +FYKTNNLT PG Y+T+
Sbjct: 156 MQFKLWASKLYVLTKGWNDFYKTNNLTDPGLYVTL 189

[Close]

BLAST of Lsi06G008310.1 vs. NCBI nr
Match: KAG7023605.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-18
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 0


Query: 52  NEQPLKLNDNENATLELAEFGG-APTIIMPPMPAIVNIIKTCSPLFSKQMTKADLADGQG 111
           NE P  +N +E+  LE+ E       +++P +  I+NII   SP + K++TK+D+++GQG
Sbjct: 5   NEAP-SINGDEDVALEVEEVAEVVAPVVIPALAVIMNIIGARSPPWEKRLTKSDVSEGQG 64

Query: 112 RLTLKKNF--------------------------ERREYDMTFKVWTSKFYVLMKGWKEF 160
           RL ++K F                          E R+YDM FK+W SK YVL KGW +F
Sbjct: 65  RLIVRKEFVTNHLLPMFNADEDPSEGIDVTVYNGEGRQYDMQFKLWASKLYVLTKGWNDF 124

The following BLAST results are available for this feature:

BLAST of Lsi06G008310.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G008310.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7L0	3.9e-22	43.53	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 ...	[more]
A0A5D3BAS8	8.1e-20	40.35	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LC65	3.5e-15	46.15	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 ...	[more]
A0A6J1CTE7	2.5e-13	41.07	putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 G...	[more]
A0A067L9U6	7.6e-10	29.47	TF-B3 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_15047 PE=4 ...	[more]

BLAST of Lsi06G008310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56101.1	8.0e-22	43.53	hypothetical protein Csa_010492 [Cucumis sativus]	[more]
XP_031736688.1	7.5e-20	40.72	uncharacterized protein LOC116402065 [Cucumis sativus]	[more]
KAA0043114.1	1.7e-19	40.35	putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYJ96217.1 put...	[more]
KAG6589940.1	6.3e-19	38.06	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7023605.1	4.1e-18	40.00	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of Lsi06G008310.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 86..166 e-value: 1.3E-6 score: 29.9
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 94..159
None	No IPR available	PANTHER	PTHR31541:SF28	B3 DOMAIN PLANT PROTEIN	coord: 121..159 coord: 76..117
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 76..117 coord: 121..159
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 94..159 e-value: 2.24186E-8 score: 47.7077

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G008310	Lsi06G008310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G008310.1.exon.5	Lsi06G008310.1.exon.5	exon
Lsi06G008310.1.exon.4	Lsi06G008310.1.exon.4	exon
Lsi06G008310.1.exon.3	Lsi06G008310.1.exon.3	exon
Lsi06G008310.1.exon.2	Lsi06G008310.1.exon.2	exon
Lsi06G008310.1.exon.1	Lsi06G008310.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G008310.1.CDS.5	Lsi06G008310.1.CDS.5	CDS
Lsi06G008310.1.CDS.4	Lsi06G008310.1.CDS.4	CDS
Lsi06G008310.1.CDS.3	Lsi06G008310.1.CDS.3	CDS
Lsi06G008310.1.CDS.2	Lsi06G008310.1.CDS.2	CDS
Lsi06G008310.1.CDS.1	Lsi06G008310.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G008310.1	Lsi06G008310.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding