Lsi06G005990.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G005990.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr06: 8199235 .. 8200185 (+)
Sequence length195
RNA-Seq ExpressionLsi06G005990.1
SyntenyLsi06G005990.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGTATAATATGGGGTCTCCCCCTCCAGCGGGATCAGAAAAGGTTGTATTAAAGTTTCGATCGGCCATGTAACAAGTTTATAGACGGAGTTAACCATTTGTCTAATATATTCAAATCAATTGCTTCTTGATTGAATTGAGTGAACGGAATTCCTATGACTCCAACAAACAAAGTAAATAGGGATAACACAAACATCGAAAATAGCATAGTATTATCTTATTCATAGGGATACGAAAAAGTCTTTTTTTTGCCAGCCAACCTCGTAAGTTATATTCCAGTGGTGTAAGCGGGTGAGCAAGCAAGTTCAAGAAAAGGAAAAGCGTTCTTTTTACTAACTTCTGTTAAACCAAGATCTATGTAATCCCATTAGAAATACTTGAGAAAAGCTTAAATGAAAAAATACCATCGGTAATGAAAAGCAATAAAATGAAGGATACTTGGGATGAGAAAATCCAAGGTATCCTGACCTCTTACGAGAACTATACTCGTTATATATGCGGTGATTCTAATCCTTCTTGGGAAGCTCATGTGAAACAGTGGGAACTAGGAGAATCAGGACAAGCAATACAGGCGGGAAAAAGATAGCAAGGGAAAGGCCTTACAACACAAAGTCTTGCTCATTCTCGATTATACTGCCTAGACGGACTCAATAGATGAAAGGTGGAGGTGATTGCATTCTCATACTTCTTGGAAGCCTTTCCTACGCCTTGGTTCACCACTGCGCACTCTCCATATTCTATTAGGCATGAGAGATGCAGGTTAAGGCAAGGGCTGCTTCTTTGGTTGATTGCTCATCAAACCCTAGCTTGCCCATGAAACTCTTTCAGTTGGGAGTCTTCATGAGTGAGTTGGCTATGGAGTTGATAATGACATTCTCTACAACAAGCACAGTAAGGAAGCCTAATGGTCTCATTTCACAGACCATGCTTGGAATGCTTCTTCCTTAG

mRNA sequence

ATGCTGGTTAAGGCAAGGGCTGCTTCTTTGGTTGATTGCTCATCAAACCCTAGCTTGCCCATGAAACTCTTTCAGTTGGGAGTCTTCATGAGTGAGTTGGCTATGGAGTTGATAATGACATTCTCTACAACAAGCACAGTAAGGAAGCCTAATGGTCTCATTTCACAGACCATGCTTGGAATGCTTCTTCCTTAG

Coding sequence (CDS)

ATGCTGGTTAAGGCAAGGGCTGCTTCTTTGGTTGATTGCTCATCAAACCCTAGCTTGCCCATGAAACTCTTTCAGTTGGGAGTCTTCATGAGTGAGTTGGCTATGGAGTTGATAATGACATTCTCTACAACAAGCACAGTAAGGAAGCCTAATGGTCTCATTTCACAGACCATGCTTGGAATGCTTCTTCCTTAG

Protein sequence

MLVKARAASLVDCSSNPSLPMKLFQLGVFMSELAMELIMTFSTTSTVRKPNGLISQTMLGMLLP
Homology
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BLAST of Lsi06G005990.1 vs. NCBI nr
Match: XP_038887675.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120077750 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  MLVKARAASLVDCSSNPSLPMKLFQLGVFM 31
          M VKARAASLVDCSSNPSLPMKLFQLGVFM
Sbjct: 1  MRVKARAASLVDCSSNPSLPMKLFQLGVFM 30

The following BLAST results are available for this feature:
BLAST of Lsi06G005990.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G005990.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G005990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887675.13.1e-0596.67LOW QUALITY PROTEIN: uncharacterized protein LOC120077750 [Benincasa hispida][more]
BLAST of Lsi06G005990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G005990Lsi06G005990gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G005990.1.exon.1Lsi06G005990.1.exon.1exon
Lsi06G005990.1.exon.2Lsi06G005990.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G005990.1.CDS.1Lsi06G005990.1.CDS.1CDS
Lsi06G005990.1.CDS.2Lsi06G005990.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G005990.1Lsi06G005990.1-proteinpolypeptide