Lsi05G018910.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G018910.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionchloroplast chaperonin 10
Locationchr05: 26080420 .. 26082779 (-)
Sequence length741
RNA-Seq ExpressionLsi05G018910.1
SyntenyLsi05G018910.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATGAGGTAAGTTGTTTAGGTTGGTGGAGTTATCATATTGGCTTCAATATTCTCTCAATTATTTATGGTCCAATTTTCCTTCAGAATTATTGGTTACCACAACTGTGCTGCAATCTTGATTGCAGGTGGATGTAGCTTTTTAACCATATGTCTTTGATTGTTAAGGGTGTCATTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACATATAAGTCATTCATCCACCATGAGGTCAAAGATTTGAATTCATCCAATATGTTGTTGAAGTAAACAAAAGTGTTAGATAACTCTAACTCCAAAATGCTGACCATAGGGTTGGTTTAGATTATAATTTGAATTGGGTTAGTCTATGCACGAGTCTTCTCAAAATTAGAATTATTTTAGTTGTATCAAAATAACTGTAGCTTATTAACTAAAAAAATAAAAACTATAAAATCTCTCTTTTTACCTAGGATAAAATTGTACATGCATATGTTATTTTATATGATAATTTTATTTAGATCTTTTACCGAACAACCTTAAGAAAATAATTTTTAATTCTTTGGGTATAATTTTTCATTAAATATTATCGAATTACTTTTTGTTTTTAATCGAATCACTTACTTTTAGTTCAACGTTTAAATAAGTTGTTAGGTACTTATCCGGCTGATATTCTCACTTTTTTCTCTTTTCAAAATTTAAAAATTTGGAACAATTGTCCTGAACAATTACATTCTTACAACTTTGAATGTTCTAAAATTATGGTATAGTTTCTAATGTTTAGCGTTTTGCCTATGAGCTAATTGTTTGAGGATATCAAGTATTTCACTGAATACTTCCATTCTTACTGTAACCGTGTGATTGATGTAAGACGGTCATTAGTGCCTCGTTAGAAAAAAATATTAAGACTCTAGTTGCAGGGCCATGAGTACTAGATATGTTTCTAGGAAAAATGTTTAGTAAGCTGGCTGCTTTTGGCTATGCATTCTTGGAACTTTTATCTTCTAACTTGTATCATGTATGTTAGCTGACCCTCTCACTCATGTCATGAAGTCTATTCATGTTCATCTTTCTCCTTTCCCTACAGATTATATTTCCTTCTACTTCTCGATTCCGAAACGAAAGCAATGAATTCAATGAGATTTCTAATATGTTAAATCATGGGATGAAACCATAGTAGCCTCTTAATTCTAGTTTAGGTAGTTAAAACTGTTGCCAGCCACAAATATAACTTGCTTCACAGTTGTTAAACATGCGACAAACAAATTTACATACGAAAACATCGCAATAAACCATCAACTTGTAGGATGGTAATTGGTAGATAACGAGCTTTCTCTCTCTCTCACTGCAAACACACACACACGTATTTACCGGGCTATGAGCTATGTTTGGATTGGCAAATACAGTCAACATTTTGATGATTAATCCCCCTCAATTGTATTATATGTTTTAATAGATTGATTGTGAATGTTGGTGGTGGTTTGTCAGGTGGATTTGGGCACAGAAGCTAAGCACTGCTTCTGTAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCCTCCAACACTTCAATGTCCACATCAGTTGTTTTCACTCAGATTAGTTCTCTTTCCCGATTGTCATTTGCTTGTTGCTTCTGCAATATCTGATTTTCATTTTTGCTTTTATTGATCTGTGTGACCTGTATAAAGATGTTAGTTATTATCGTTAGGAAGAATACCATAAATTATTTTTAAAAAATTACTTAACCTTACCAAAAAAAAAAAAAAATCAAATCAAATAGTTATGCAACTATTTTTTTTTTCTTTCCCCTCCTAGAGAATATTAAACCTTTTTTAAATATAAACTTTCAAACTGTCTATAGAGGATGTTTAGTTTCTAGGTTGAGTTTGTGTAGTCTTGGATTATGAAGTTGAGTCTGCTATTTGATTTATGGATGGTTTGCTAATCTCATAGCTATATAAATTTAAGTGGTTAAAATTCACCACTTAAGTAACATGACTCAATAAACCTTATTTCTTGATGTGGGTTCTTTAATTTCAATTTCTAGGGGATCATGTTCTATTGA

mRNA sequence

ATGCCTATGAGAATTATTGGTTACCACAACTGTGCTGCAATCTTGATTGCAGGTGGATATCTTTTACCGAACAACCTTAAGAAAATAATTTTTAATTCTTTGGCTAATTGTTTGAGGATATCAAGTATTTCACTGAATACTTCCATTCTTACTGTGGATTTGGGCACAGAAGCTAAGCACTGCTTCTGTAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCCTCCAACACTTCAATGTCCACATCAGTTGTTTTCACTCAGATTAGTTCTCTTTCCCGATTGTCATTTGCTTGTTGCTTCTGCAATATCTGATTTTCATTTTTGCTTTTATTGATCTGTGTGACCTGTATAAAGATGTTAGTTATTATCGTTAGGAAGAATACCATAAATTATTTTTAAAAAATTACTTAACCTTACCAAAAAAAAAAAAAAATCAAATCAAATAGTTATGCAACTATTTTTTTTTTCTTTCCCCTCCTAGAGAATATTAAACCTTTTTTAAATATAAACTTTCAAACTGTCTATAGAGGATGTTTAGTTTCTAGGTTGAGTTTGTGTAGTCTTGGATTATGAAGTTGAGTCTGCTATTTGATTTATGGATGGTTTGCTAATCTCATAGCTATATAAATTTAAGTGGTTAAAATTCACCACTTAAGTAACATGACTCAATAAACCTTATTTCTTGATGTGGGTTCTTTAATTTCAATTTCTAGGGGATCATGTTCTATTGA

Coding sequence (CDS)

ATGCCTATGAGAATTATTGGTTACCACAACTGTGCTGCAATCTTGATTGCAGGTGGATATCTTTTACCGAACAACCTTAAGAAAATAATTTTTAATTCTTTGGCTAATTGTTTGAGGATATCAAGTATTTCACTGAATACTTCCATTCTTACTGTGGATTTGGGCACAGAAGCTAAGCACTGCTTCTGTAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAG

Protein sequence

MPMRIIGYHNCAAILIAGGYLLPNNLKKIIFNSLANCLRISSISLNTSILTVDLGTEAKHCFCKAGDLLAVVE
Homology
[Close]
BLAST of Lsi05G018910.1 vs. NCBI nr
Match: XP_021659179.1 (10 kDa chaperonin 1, chloroplastic-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-04
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 27  KKIIFNSLANCLRISSISLNTSILTVDLGTEAKHCFCKAGDLLAVVE 74
           KK++F+ + N   +SS++      TVDLGTE +HCFCKAGDLLAVVE
Sbjct: 102 KKVLFSDI-NAYEVSSVA------TVDLGTETRHCFCKAGDLLAVVE 141

[Close]
BLAST of Lsi05G018910.1 vs. TAIR 10
Match: AT2G44650.1 (chloroplast chaperonin 10 )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 46  NTSILTVDLGTEAKHCFCKAGDLLAVVE 74
           + S   VDLGT+A+HCFCK  DLLA+VE
Sbjct: 112 DVSAYEVDLGTDARHCFCKESDLLALVE 139

The following BLAST results are available for this feature:
BLAST of Lsi05G018910.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G018910.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G018910.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_021659179.15.1e-0457.4510 kDa chaperonin 1, chloroplastic-like isoform X1 [Hevea brasiliensis][more]
BLAST of Lsi05G018910.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G44650.11.4e-0464.29chloroplast chaperonin 10 [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi05G018910Lsi05G018910gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G018910.1.exon.1Lsi05G018910.1.exon.1exon
Lsi05G018910.1.exon.2Lsi05G018910.1.exon.2exon
Lsi05G018910.1.exon.3Lsi05G018910.1.exon.3exon
Lsi05G018910.1.exon.4Lsi05G018910.1.exon.4exon
Lsi05G018910.1.exon.5Lsi05G018910.1.exon.5exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G018910.1.three_prime_UTR.1Lsi05G018910.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G018910.1.CDS.5Lsi05G018910.1.CDS.5CDS
Lsi05G018910.1.CDS.4Lsi05G018910.1.CDS.4CDS
Lsi05G018910.1.CDS.3Lsi05G018910.1.CDS.3CDS
Lsi05G018910.1.CDS.2Lsi05G018910.1.CDS.2CDS
Lsi05G018910.1.CDS.1Lsi05G018910.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi05G018910.1Lsi05G018910.1-proteinpolypeptide