Lsi04G004400.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G004400.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor PRE6-like
Location	chr04: 4217941 .. 4219711 (+)
Sequence length	334
RNA-Seq Expression	Lsi04G004400.1
Synteny	Lsi04G004400.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGTGGGGGAAATCTGACAAAGTTTTCTCGTTAATTTTGAAACAAACAAAAACAATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGCAATGGACGTTCCTCCTCCAGGGTATTTTAATTTCTTCTTCTCTCTCTCTCTCTCTCTCTTTTCTTTTCATTTTTATTATTCCAACTATATATATATATATATATATATTTATCTTACTTCATTAATATTAAATGAATTAAAAATTAAATTTACCAAAAAATATATATCCACTTAAGTTGCTGTTTGTGTGGACATTAGTTTGGATATAGTCAAGTGTTGTGTGCTAATTTAGCAGCTCCCAAGAGGAAGGAGAGTGGTTAAGAACGATAGGTTTGGACTTTGAATCTAAATTTCCATCTTACATTATTCTCAATTATCTCTCCTTCAAATAGGAAAAAAAACGTGTTTAACGGCCTGTGTGTTTTAATCACCTTTAAAAGTCAATTCAAAACAATGCTCTATTAAAACTAATTCGAATAACTATTCTTTTCTCATACTTTTTTTTTTTTTTTTGACAAATTACTTTTGATTTTACTTTTTTAACAAAACACATGAACTTTTAAGTCAGATTTCAAATAATAAATCAAGTTTTAAATATGTTTTGTTGGGTAATTAAATTACAAAACTACTGCAAATATCTTCAAATATAACAAAATGTTATTGTTTATCGGTGATATACAGTGTTAGACATTAATAGACATCTATCACTGTCTATGTCTAACTGACACACAATGATAGATAATAGTAGTCTATCACTGTCCATCACTGATAAACAGTAACATTTTGCTATATTTATAAATAAGTTGACTCATTTTGGTATATTTGAAAACAACCGAATTTTTTTTAGTTTTTCACATTTCCGACATTAAAATAAAGTAAGAAACTAGAGATAGAAGTAGTGTTTTTATAAGATTAATTTAAAAAATATGTTGAAAGGTCTTGACTATATTATCTAGCGTTCCAAATGACCAAGCATGAGGTCTCACCCTGATGGAAGCTGAAACCTAAATTATACACCCATTACATGTTCTTTACAATTTTGAGCTTAGAGTTTAAAGAATTGCTATATATAAACCCTATAGTTCCCATTGGTGCCTCTGCATTTTTTTTTATGTTATCCTCTAATGATAAAATGCTATTTCTAATTGCCCATGGACGTAGTTAATATATACACTATTAGTGGAGCACGTTTTACTATTTATGCTTGATTGTTGATTTCGTTTTTGCCACAACAAAATATTGTCAAATTAAATGGAGCATTAATTAATTGGGGCAATTGCAAATGTAGTAACCAGACTCAAAATATTGACCAATATAACACAATGCAAAAAAATTTGCATATATAACAAAATTTAGTTCCAGTGATATAGTCTGTCACTGATAGATTTTACTATATTTGAAATTATTTTAAAAAAAAACTTACTATTAACTTAATTATTAGTCCTAAAATGTTATTCATTACAATTACCTTAATTAATTTGTGAATGTGTATGGGAGGTTGTTTAGGTATCAGCTTCAAAGATTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGACTATCAGAGCTATTGGCAACAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGTTTACTTATG

mRNA sequence

AAAAAAAAAGTGGGGGAAATCTGACAAAGTTTTCTCGTTAATTTTGAAACAAACAAAAACAATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGCAATGGACGTTCCTCCTCCAGGCTCCCAAGAGGAAGGAGAGTGGTTAAGAACGATAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGACTATCAGAGCTATTGGCAACAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGTTTACTTATG

Coding sequence (CDS)

ATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGATTCGCAATGGACGTTCCTCCTCCAGGCTCCCAAGAGGAAGGAGAGTGGTTAAGAACGATAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGACTATCAGAGCTATTGGCAACAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGTTTACTTATG

Protein sequence

MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKNDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

Homology

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-17
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRS-----SSRLPRGRRVVKND 61
          S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  RS     S  L      ++N 
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN- 62

Query: 62 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLL 91
           L REVDDLSDRLSELLA+TD  SA+AAIIRSLL
Sbjct: 63 -LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-17
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ R+P  R + +      
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SL +EVDDLS+RLSELLAT+D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-17
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ R+P  R + +      
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SL +EVDDLS+RLSELLAT+D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-14
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGR------RVVK 60
          MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S ++   R        ++
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL 91
          N  L REVDDLS+RLSELLA +D  +AQAA+IRSLL
Sbjct: 61 N--LHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 5  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQR 64
          SSRSR     +  I+D+QI DL+SKLQ L+PE R  RS+ R+P  R + +      SL R
Sbjct: 2  SSRSRSRASSAARITDEQIGDLVSKLQALLPEARL-RSNDRVPSARVLQETCSYIRSLHR 61

Query: 65 EVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          EVDDLS+RL+ELLA  D  +AQAA+IR LLM
Sbjct: 62 EVDDLSERLAELLAAADVSTAQAAVIRGLLM 91

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy TrEMBL
Match: A0A0A0KQJ7 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy TrEMBL
Match: A0A1S3BFH5 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREVDDLSDRLS+LLA+TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-26
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSR+   + + +      
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREVDDLS+RLSELLA+TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-24
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSR+   + + +      
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.5e-24
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSR+   + + +      
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 78/95 (82.11%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS RSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSR+   + + +      
Sbjct: 1  MSGRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. NCBI nr
Match: XP_008446331.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-26
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSR+   + + +      
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREVDDLSDRLS+LLA+TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSR+   + + +      
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREVDDLS+RLSELLA+TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. NCBI nr
Match: XP_022968308.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 120.9 bits (302), Expect = 5.6e-24
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----D 60
          MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSR+   + + +      
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
          SLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lsi04G004400.1 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-18
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRS-----SSRLPRGRRVVKND 61
          S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  RS     S  L      ++N 
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN- 62

Query: 62 SLQREVDDLSDRLSELLATTDPESAQAAIIRSLL 91
           L REVDDLSDRLSELLA+TD  SA+AAIIRSLL
Sbjct: 63 -LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lsi04G004400.1 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-15
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGR------RVVK 60
          MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S ++   R        ++
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NDSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL 91
          N  L REVDDLS+RLSELLA +D  +AQAA+IRSLL
Sbjct: 61 N--LHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Lsi04G004400.1 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 5  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQR 64
          SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ +   + + +      +L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLATTDPESAQAAIIRSLL 91
          E DDLSDRL++LL + DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Lsi04G004400.1 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-13
Identity = 48/95 (50.53%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKNDS--- 60
          MS+R SRSR++G  +  I+D+QI DL+ +L +L+PE+ N R S ++   R + +  S   
Sbjct: 1  MSSRKSRSRQTG--ASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIR 60

Query: 61 -LQREVDDLSDRLSELLATTDPESAQAAIIRSLLM 92
           L +EVDDLS+RLS+LL +TD  SAQAA+IRSLLM
Sbjct: 61 NLSKEVDDLSERLSQLLESTD--SAQAALIRSLLM 91

[Close]

BLAST of Lsi04G004400.1 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 70.5 bits (171), Expect = 8.0e-13
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 7  RSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRLPRGRRVVKN----DSLQREV 66
          RSR++   SR ISDDQ+ DL+SKL+Q +PEI   R S ++   + + +       L REV
Sbjct: 5  RSRQTSNASR-ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREV 64

Query: 67 DDLSDRLSELLATTDPESAQAAIIRSLLM 92
          D+LSDRLS+LL + D +S +AA+IRSLLM
Sbjct: 65 DNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Lsi04G004400.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	4.0e-17	63.83	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	6.8e-17	61.05	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	6.8e-17	61.05	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9CA64	2.4e-14	57.29	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
A2Z730	1.6e-13	53.85	Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV...	[more]

BLAST of Lsi04G004400.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ7	1.7e-26	80.00	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1	[more]
A0A1S3BFH5	3.8e-26	78.95	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1	[more]
A0A6J1DAM4	4.9e-26	78.95	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A6J1HXN1	2.7e-24	75.79	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]
A0A6J1G268	3.5e-24	75.79	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]

BLAST of Lsi04G004400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893351.1	1.1e-27	82.11	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_004135185.1	3.5e-26	80.00	transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa...	[more]
XP_008446331.1	7.7e-26	78.95	PREDICTED: transcription factor PRE6-like [Cucumis melo]	[more]
XP_022151230.1	1.0e-25	78.95	transcription factor PRE6-like [Momordica charantia]	[more]
XP_022968308.1	5.6e-24	75.79	transcription factor PRE6-like [Cucurbita maxima]	[more]

BLAST of Lsi04G004400.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	2.8e-18	63.83	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	1.7e-15	57.29	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT5G15160.1	2.5e-14	51.11	BANQUO 2	[more]
AT3G47710.1	2.1e-13	50.53	BANQUO 3	[more]
AT3G28857.1	8.0e-13	49.44	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..75
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..91
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G004400	Lsi04G004400	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G004400.1.exon.1	Lsi04G004400.1.exon.1	exon
Lsi04G004400.1.exon.2	Lsi04G004400.1.exon.2	exon
Lsi04G004400.1.exon.3	Lsi04G004400.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G004400.1.five_prime_UTR.1	Lsi04G004400.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G004400.1.CDS.1	Lsi04G004400.1.CDS.1	CDS
Lsi04G004400.1.CDS.2	Lsi04G004400.1.CDS.2	CDS
Lsi04G004400.1.CDS.3	Lsi04G004400.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G004400.1	Lsi04G004400.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity