Lsi03G020230.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G020230.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	29 kDa ribonucleoprotein, chloroplastic
Location	chr03: 31600225 .. 31602407 (+)
Sequence length	1241
RNA-Seq Expression	Lsi03G020230.1
Synteny	Lsi03G020230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATATCTAGTTTCTCCCCGTCGAGCCTTCTCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTTACGCTCTCATCCCTAACCCTCAAAACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTCTCTCTCAATCCTTCTTCCATTCGCCTTCTTTCAAATCCCATTTCCGTTTCTTCTTTTGTTCTTCGTTCTCATAGGGTTTCTCCTCCCTTCTCCTCTCGCTTTGTCCGAAATGTTGCAGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGGGGCCGATGGAGACGAATCTAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGCGTTGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTACTTTTCTTTTTAGTGTTATATCAAGTGTTTCTGTTTTCTCGAGAGACCCATTTGGTTTGCCCTAATTTTCGTGATGTTTTTTTTCTTCTTAAAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACAATGTCAAGCGTTGACGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGTAAGTGATTAAACCCCTTTTACGCCAGCTTAATACTCTGCAATATTGCTTTTGGGTATGATTCATTTACTCCTTGCCAAATTAATCGCTGTAACTGTAACTCAAACGAAACAATTAGGAAGTTATAGAGCTTTCAAATTTTGAACATCAAATTATGAACGAGCACAACTTATATTGTCGTCATTAGAGAACCCAACCTAGTGACTTGCACGTATGTAGAGCTTTTATTTGCTCCCATGCGAGGCGTAATTTTAACGCCAAAAGTTTCATAGATTCACCTTTGTGATCCATTTACATAGTGTTATCTTTCGTTTTCAATCAAAGGTTTATATTGGATCTGCTTCTTGTTGATGATTCCTGGCTAACTCCTCACAGGAACTCGATGGGAGATCACTGAGGGTAAATTATGGACCCCCTCCACCGAAAAGGGATGATTCCTCCTTCAGGGGTTCCAGAAATACTTCAAGATTCGATAACCCCAACCGTATTCATGTGAGTAACCTTGCTTGGGGTGTTGATGATCTTACACTTGAGAGCTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTATGACCGTGAGAGCGGAAGATCTAGGGGCTTTGGTTTCGTATCATATAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGCTGTAAGTTCACATTGACCCTTCATTTTTATGCGTTTTTTAGGGCCAGTTCTGCATTTGTTTATGATGAATCTTGATATGCTCCCTCATGTTCAATTAAACCTTGCTTACTGAACTCAGGAGATAGACATGAAATCCTGTTTTTCATATTAATCATGATTTTGTTGTAGCATCTTCACCCTCTAATTTTCCCGAGTAATTGTCATTCCATTCCTATGCATTAACGATTTTATATGCAATTCATTTCACTTGTTTCCTTCAAAGATGTTCTTTTGTTGTTCCCATCTGTCTTTCCTGAAGAGAAGTTTTTTGACGGAGAGTTTTATCTCAGTCTATCATATTTTTCTTATAAAACTCATTTGATGCATCGAATACCCCTTGGAGGCATAGATTCATGGCTTGATGATCAAGAAGTGGTTGATTTTGAATCGAGCATCTTTCATATATCTAAGTAAAAATGTGTACATTTGCAGGACTTGAGTGGAAGAACCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGCAGCTTTTATTTTATAAAGAATTAACGTGGTTTTTGGGCTCTTATTTTTCTATGGTCTGTTCTCCGATAGTAAATGGTGCCGAATGATTTAGTCTACTTTCTCTATGATCGATGGTATTTGATATATTTTTTTTTCTTTCTTTTCTGATTTTGCATTAAAGTGGGATTAAAAACTTCATATGTTTGTGTCAGTGTCCCAAACTCTTTGAAGGCATAAGTCTTGAGACGGCATAATGTTAACTTATAAAAGCAGATGCCTACGCCTCTAAGATTATAATGCCTGATTTTGGATTACATTACAATCTAAACCCTTTAAGATTATAATGCCTGATTTTGGATT

mRNA sequence

TAAATATCTAGTTTCTCCCCGTCGAGCCTTCTCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTTACGCTCTCATCCCTAACCCTCAAAACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTCTCTCTCAATCCTTCTTCCATTCGCCTTCTTTCAAATCCCATTTCCGTTTCTTCTTTTGTTCTTCGTTCTCATAGGGTTTCTCCTCCCTTCTCCTCTCGCTTTGTCCGAAATGTTGCAGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGGGGCCGATGGAGACGAATCTAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGCGTTGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACAATGTCAAGCGTTGACGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTCGATGGGAGATCACTGAGGGTAAATTATGGACCCCCTCCACCGAAAAGGGATGATTCCTCCTTCAGGGGTTCCAGAAATACTTCAAGATTCGATAACCCCAACCGTATTCATGTGAGTAACCTTGCTTGGGGTGTTGATGATCTTACACTTGAGAGCTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTATGACCGTGAGAGCGGAAGATCTAGGGGCTTTGGTTTCGTATCATATAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGCTGACTTGAGTGGAAGAACCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGCAGCTTTTATTTTATAAAGAATTAACGTGGTTTTTGGGCTCTTATTTTTCTATGGTCTGTTCTCCGATAGTAAATGGTGCCGAATGATTTAGTCTACTTTCTCTATGATCGATGGTATTTGATATATTTTTTTTTCTTTCTTTTCTGATTTTGCATTAAAGTGGGATTAAAAACTTCATATGTTTGTGTCAGTGTCCCAAACTCTTTGAAGGCATAAGTCTTGAGACGGCATAATGTTAACTTATAAAAGCAGATGCCTACGCCTCTAAGATTATAATGCCTGATTTTGGATTACATTACAATCTAAACCCTTTAAGATTATAATGCCTGATTTTGGATT

Coding sequence (CDS)

ATGTCTGCCTCTGCGGCTTCTCTTACGCTCTCATCCCTAACCCTCAAAACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTCTCTCTCAATCCTTCTTCCATTCGCCTTCTTTCAAATCCCATTTCCGTTTCTTCTTTTGTTCTTCGTTCTCATAGGGTTTCTCCTCCCTTCTCCTCTCGCTTTGTCCGAAATGTTGCAGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGGGGCCGATGGAGACGAATCTAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGCGTTGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACAATGTCAAGCGTTGACGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTCGATGGGAGATCACTGAGGGTAAATTATGGACCCCCTCCACCGAAAAGGGATGATTCCTCCTTCAGGGGTTCCAGAAATACTTCAAGATTCGATAACCCCAACCGTATTCATGTGAGTAACCTTGCTTGGGGTGTTGATGATCTTACACTTGAGAGCTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTATGACCGTGAGAGCGGAAGATCTAGGGGCTTTGGTTTCGTATCATATAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGCTGACTTGAGTGGAAGAACCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGA

Protein sequence

MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSSRFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFRGSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSYNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF

Homology

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BLAST of Lsi03G020230.1 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.3e-86
Identity = 187/286 (65.38%), Postives = 216/286 (75.52%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNP-----KIKLFSLNPSSIRLLSNPISVSSFVLRSHRVS 60
           M++SA+SL   SLT +TL L  P      +  FSL PSS+ L     S+SS        S
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNL-----SLSS-------SS 60

Query: 61  PPFSSRFVRNVAVSSDYDQEEDTL-GADG--DESSYAPDLKLFVGNLPFSVDSAQLAGLF 120
             FSSRFVR V + SD+DQ ED   G DG  +E +++PDLK+FVGNLPFS DSA LA LF
Sbjct: 61  SCFSSRFVRKVTL-SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           E AG VE VEVIYDK TGRSRGFGFVTMSS +EVEAA QQFNGYELDGR+LRVN GPPP 
Sbjct: 121 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE 180

Query: 181 KRDDSSFR-GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGR 240
           KR++SSFR GSR    FD+ NR++V NLAWGVD   LE+LF E G VV+AKVVYDR+SGR
Sbjct: 181 KRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR 240

Query: 241 SRGFGFVSYNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           SRGFGFV+Y+SAEEVNNAI+SLDG DL+GR IRV+ AEARPPRRQF
Sbjct: 241 SRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.8e-84
Identity = 185/295 (62.71%), Postives = 213/295 (72.20%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNP-----KIKLFSLNPSSIRL-LSNPISVSSFVLRSHRV 60
           M++SA+SL   SLT +TL L  P      +  FSL PSS+ L LS+P S           
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSPSSC---------- 60

Query: 61  SPPFSSRFVRNVAVSSDYDQEEDTLGADGDES-----SYAPDLKLFVGNLPFSVDSAQLA 120
              FSSRFVR V +  D+DQ ED    DGDE      +++PDLK+FVGNL FS DSA LA
Sbjct: 61  ---FSSRFVRKVTL-PDFDQIEDV--EDGDEGVEEERNFSPDLKIFVGNLLFSADSAALA 120

Query: 121 GLFESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGP 180
            LFE AG VE VEVIYDK TGRSRGFGFVTMSS +EVEAA QQFNGYELDGR+LRVN GP
Sbjct: 121 ELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGP 180

Query: 181 PPPKRDDSSFR-------GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAK 240
           PP KR++SSFR       GSR    FD+ NR++V NLAWGVD   LE+LF E G VV+AK
Sbjct: 181 PPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAK 240

Query: 241 VVYDRESGRSRGFGFVSYNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           VVYDR+SGRSRGFGFV+Y+SAEEVNNAI+SLDG DL+GR IRV+ AEARPPRRQF
Sbjct: 241 VVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.4e-83
Identity = 178/292 (60.96%), Postives = 214/292 (73.29%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           M+ASA+SL LSS   K+L     +    SL   S+    N  SV SF + +   SP  +S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSV-SFSIAAKWNSP--AS 60

Query: 61  RFVRNVAVSSDYDQEEDTLG--ADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQV 120
           RF RNVA++S+++ EED     A   E S++ DLKLFVGNLPF+VDSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSS 180
           E VEVIYDK TGRSRGFGFVTMSSV EVEAAAQQFNGYELDGR LRVN GPPPPKR+D  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 FRGSRNT-------------SRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVY 240
            RG R++             S   + NR++V NL+WGVDD+ LESLF E G VVEA+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRESGRSRGFGFVSYNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           DR+SGRS+GFGFV+Y+S++EV NAI+SLDGADL GR IRV++AEARPPRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 282.0 bits (720), Expect = 7.5e-75
Identity = 175/343 (51.02%), Postives = 213/343 (62.10%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   VS F   + + S P  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLGADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LE+LF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.2e-73
Identity = 167/298 (56.04%), Postives = 205/298 (68.79%), Query Frame = 0


Query: 2   SASAASLTLSSLTLKTLSLSNPK--IKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFS 61
           S+S +SL    +T +T S   P   +  FSL  SS+ L     S+SS  +       PF 
Sbjct: 3   SSSVSSLQFLFVTSQTPSSLKPNSTLSFFSLPSSSLNL-----SLSSSSIGHSASIKPFE 62

Query: 62  SRFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 121
           S F   VA+ SD+DQ ED +    ++  ++ DLKLFVGNLPFSVDSA LAGLFE AG VE
Sbjct: 63  SSFSTRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 122

Query: 122 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSF 181
            VEVIYDK +GRSRGFGFVTMS+ +EVEAA QQFNGYE+DGR++RVN GP P KR++SSF
Sbjct: 123 IVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 182

Query: 182 RGSR------------NTS--------RFDNPNRIHVSNLAWGVDDLTLESLFREHGNVV 241
            G R            N+S          D+ NR++V NL+WGVDDL L+ LF E GNVV
Sbjct: 183 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 242

Query: 242 EAKVVYDRESGRSRGFGFVSYNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           +AKVVYDR+SGRSRGFGFV+Y+SA+EVN+AI SL+G DL GR+IRV+ AE R PRRQF
Sbjct: 243 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.9e-131
Identity = 250/277 (90.25%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           MSASAASLTLSSLTLKTLSLSNPK KLFSLNPSS   L NPIS+SSFVL SHRVS PFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTL ADGD+S YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
           GSRN SRFDN NR+HVSNLAWGVDDLTLE+LFREHGNV+EAKVVYDR+SGRSRGFGFV+Y
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G DL GR+IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.9e-131
Identity = 250/277 (90.25%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           MSASAASLTLSSLTLKTLSLSNPK KLFSLNPSS   L NPIS+SSFVL SHRVS PFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTL ADGD+S YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
           GSRN SRFDN NR+HVSNLAWGVDDLTLE+LFREHGNV+EAKVVYDR+SGRSRGFGFV+Y
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G DL GR+IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.2e-130
Identity = 249/278 (89.57%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNP-SSIRLLSNPISVSSFVLRSHRVSPPFS 60
           MSASAASLTL SLTLKTLS SNPK KLFSLNP SSIRLLSNPIS+SSF+L SHRVSPPFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TL  DGD+SSYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVS 240
           RGSRN SRFDN NR+HVSNLAWGVDDLTLE+LFRE GNV+EAKVVYDR+SG+SRGFGFV+
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           YNSAEEVN AIQSLDG DL GR IRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy TrEMBL
Match: A0A6J1FAM3 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442336 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 4.2e-121
Identity = 231/277 (83.39%), Postives = 248/277 (89.53%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSSIRL SNPISVSS VLRS RVSPP SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE    +DGDESSYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPPKRDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
           GSRN+S FD PNR+HVSNLAWGVDD  LE+ FR+ G+VVEAKVVYDRESGRSRGFGFV++
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDGADL+GR++RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Lsi03G020230.1 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 7.2e-121
Identity = 230/277 (83.03%), Postives = 250/277 (90.25%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           M+ASA  LTLSSLT KTLS SNPK +LFSLNPSSI   SNPIS+S+ VLRS RVSP F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L  DGD+SSYAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDK TGRSRGFGFVTMS+V E EAAAQQFNGYEL+GR LRVNYGPPPPKRDDSSFR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
            S+N S FDN N +HVSNLAWGVDDLTLE+LFRE GNVV+AKVVYDR+SGRSRGFGFV+Y
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           +SAEEVNNAIQSLDG DL+GR+IRVTQAEAR PRRQF
Sbjct: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277

[Close]

BLAST of Lsi03G020230.1 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 498.4 bits (1282), Expect = 3.9e-137
Identity = 258/277 (93.14%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           MSASAASLTLS+LTLKTLSLSNPKIKLFSLNPSS RLLSNP S+SS VLRS RVSPPFSS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTL AD +E+SYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP+RDDSSFR
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
           GSRN SRFDNPNR+HVSNLAWGVDDLTLE+LFREHGNVVEAKVVYDRESG+SRGFGFV++
Sbjct: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSLDGA+LSGR IRVTQAEARPPRRQF
Sbjct: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 277

[Close]

BLAST of Lsi03G020230.1 vs. NCBI nr
Match: XP_008442686.1 (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK25133.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-130
Identity = 250/277 (90.25%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           MSASAASLTLSSLTLKTLSLSNPK KLFSLNPSS   L NPIS+SSFVL SHRVS PFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTL ADGD+S YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
           GSRN SRFDN NR+HVSNLAWGVDDLTLE+LFREHGNV+EAKVVYDR+SGRSRGFGFV+Y
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G DL GR+IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of Lsi03G020230.1 vs. NCBI nr
Match: XP_004137828.1 (29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetical protein Csa_002481 [Cucumis sativus])

HSP 1 Score: 474.9 bits (1221), Expect = 4.6e-130
Identity = 249/278 (89.57%), Postives = 260/278 (93.53%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNP-SSIRLLSNPISVSSFVLRSHRVSPPFS 60
           MSASAASLTL SLTLKTLS SNPK KLFSLNP SSIRLLSNPIS+SSF+L SHRVSPPFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TL  DGD+SSYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVS 240
           RGSRN SRFDN NR+HVSNLAWGVDDLTLE+LFRE GNV+EAKVVYDR+SG+SRGFGFV+
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           YNSAEEVN AIQSLDG DL GR IRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of Lsi03G020230.1 vs. NCBI nr
Match: XP_023528633.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.8 bits (1148), Expect = 1.3e-121
Identity = 232/277 (83.75%), Postives = 249/277 (89.89%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSSIRLLSNPISVSS VLRS RVSPP SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE    +DGDESSYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPPKRDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
           GSRN+S FD PNR+HVSNLAWGVDD  LE+ FR+ G+VVEAKVVYDRESGRSRGFGFV++
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDGADL+GR++RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Lsi03G020230.1 vs. NCBI nr
Match: XP_022935473.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 444.1 bits (1141), Expect = 8.7e-121
Identity = 231/277 (83.39%), Postives = 248/277 (89.53%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSSIRL SNPISVSS VLRS RVSPP SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLGADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE    +DGDESSYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPPKRDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRGFGFVSY 240
           GSRN+S FD PNR+HVSNLAWGVDD  LE+ FR+ G+VVEAKVVYDRESGRSRGFGFV++
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDGADL+GR++RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Lsi03G020230.1 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 309.7 bits (792), Expect = 2.4e-84
Identity = 178/292 (60.96%), Postives = 214/292 (73.29%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPPFSS 60
           M+ASA+SL LSS   K+L     +    SL   S+    N  SV SF + +   SP  +S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSV-SFSIAAKWNSP--AS 60

Query: 61  RFVRNVAVSSDYDQEEDTLG--ADGDESSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQV 120
           RF RNVA++S+++ EED     A   E S++ DLKLFVGNLPF+VDSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPKRDDSS 180
           E VEVIYDK TGRSRGFGFVTMSSV EVEAAAQQFNGYELDGR LRVN GPPPPKR+D  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 FRGSRNT-------------SRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVY 240
            RG R++             S   + NR++V NL+WGVDD+ LESLF E G VVEA+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRESGRSRGFGFVSYNSAEEVNNAIQSLDGADLSGRTIRVTQAEARPPRRQF 278
           DR+SGRS+GFGFV+Y+S++EV NAI+SLDGADL GR IRV++AEARPPRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of Lsi03G020230.1 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 282.0 bits (720), Expect = 5.3e-76
Identity = 175/343 (51.02%), Postives = 213/343 (62.10%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   VS F   + + S P  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLGADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LE+LF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of Lsi03G020230.1 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 282.0 bits (720), Expect = 5.3e-76
Identity = 175/343 (51.02%), Postives = 213/343 (62.10%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   VS F   + + S P  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLGADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LE+LF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of Lsi03G020230.1 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 282.0 bits (720), Expect = 5.3e-76
Identity = 175/343 (51.02%), Postives = 213/343 (62.10%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   VS F   + + S P  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLGADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPP 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSSFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NTSRFDNPNRIHVSNLAWGVDDLTLESLFREHGNVVEAKVVYDRESGRSRG 278
                    + S   + NR++V NL+WGVDD+ LE+LF E G VVEA+V+YDR+SGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of Lsi03G020230.1 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 269.6 bits (688), Expect = 2.7e-72
Identity = 175/364 (48.08%), Postives = 213/364 (58.52%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKIKLFSLNPSSIRLLSNPISVSSFVLRSHRVSPP--F 60
           MSASA+SL+  +     L +S P   +  L PS    L +   VS F   + + S P  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRP-ASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLGADGDES------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGD+S      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGY---------------- 180
           ESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGY                
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLIR 180

Query: 181 -----ELDGRSLRVNYGPPPPKRDDSSFRGSR---------------------------- 240
                E +GR LRVN GPPPPKR++S  RG R                            
Sbjct: 181 VLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGY 240

Query: 241 ------------------------------NTSRFDNPNRIHVSNLAWGVDDLTLESLFR 278
                                         + S   + NR++V NL+WGVDD+ LE+LF 
Sbjct: 241 GSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFN 300

The following BLAST results are available for this feature:

BLAST of Lsi03G020230.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	3.3e-86	65.38	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	6.8e-84	62.71	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	3.4e-83	60.96	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
Q43349	7.5e-75	51.02	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]
P49314	9.2e-73	56.04	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Lsi03G020230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQA3	5.9e-131	90.25	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5S7	5.9e-131	90.25	29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ...	[more]
A0A0A0LAY6	2.2e-130	89.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]
A0A6J1FAM3	4.2e-121	83.39	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1F601	7.2e-121	83.03	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Lsi03G020230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905951.1	3.9e-137	93.14	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]
XP_008442686.1	1.2e-130	90.25	PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 ...	[more]
XP_004137828.1	4.6e-130	89.57	29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetic...	[more]
XP_023528633.1	1.3e-121	83.75	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935473.1	8.7e-121	83.39	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Lsi03G020230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	2.4e-84	60.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	5.3e-76	51.02	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	5.3e-76	51.02	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	5.3e-76	51.02	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	2.7e-72	48.08	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 193..266 e-value: 1.5E-24 score: 97.6 coord: 93..166 e-value: 5.9E-28 score: 108.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 94..164 e-value: 7.4E-20 score: 70.6 coord: 195..264 e-value: 8.6E-18 score: 63.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 192..270 score: 19.228996
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..170 score: 19.58716
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 65..184 e-value: 7.1E-30 score: 105.9 coord: 185..277 e-value: 8.3E-26 score: 92.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..187
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..274
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..274
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 93..166 e-value: 5.37037E-34 score: 116.559
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 87..186
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 188..276

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G020230	Lsi03G020230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020230.1.exon.4	Lsi03G020230.1.exon.4	exon
Lsi03G020230.1.exon.3	Lsi03G020230.1.exon.3	exon
Lsi03G020230.1.exon.2	Lsi03G020230.1.exon.2	exon
Lsi03G020230.1.exon.1	Lsi03G020230.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020230.1.five_prime_UTR.1	Lsi03G020230.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020230.1.CDS.1	Lsi03G020230.1.CDS.1	CDS
Lsi03G020230.1.CDS.2	Lsi03G020230.1.CDS.2	CDS
Lsi03G020230.1.CDS.3	Lsi03G020230.1.CDS.3	CDS
Lsi03G020230.1.CDS.4	Lsi03G020230.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020230.1.three_prime_UTR.1	Lsi03G020230.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G020230.1	Lsi03G020230.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding