Lsi03G001280.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001280.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function, DUF584
Location	chr03: 1785020 .. 1785742 (+)
Sequence length	723
RNA-Seq Expression	Lsi03G001280.1
Synteny	Lsi03G001280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTTAACCTTCCTTCCTCCCGCTTCCGCCATCGCAAGTCTCCCTCCTCCGAACGCTTTCTCGCTTCCTTCTCTTACCCCCCTGCTCGTACTGCAAACCCTAGCTCCACCAACGGCATAGACGACGATAACGAGCTCAACGAAGACGACGTCTTCTGGACTGGCGATTTTGCTGCCGATTCCGCCCACCATAGCCACTCCACTCCCTCCTCCTCCTCCTCTTCCACTCCTCGTCACCATATTCATCACCTCCAGCATCACAAGGGTTTTCCCCTGCCGGAGACCTTCGGAATCCTTGCTGCTCTCCCCGAGAACGAGGCCTCCTCCAGCCTTCGCAACTCTTCACATTTCTATCACAAGGCGTCCGTTTCGTCCTCGTCCTCGTCCTCCCCTTCGTCTTCTCGGATGATTCCGACGATCCCTAAACCTCCTCTGGAGCGATTGCCTCTTCCGATTTCGTCCTCGTTGAAGTACCAGTCCGCCCCTGTCAATGTGCCCATAATGTCGAAGGCGGTTCAGAGACAGCAGGAGATTGACGTGGATGATGTTGATGAAGAAGATGGGGAAATGTTGCCGCCCCATGAGATTGTGGCTAGAAGTCTGGCTCAGGCGCCGATGTTGTCTTGCTCAGTGCTCGAGGGTGCAGGAAGGACGTTAAAGGGCAGGGATCTTCGCCAGGTTCGCAACGCGGTTTGGAGACGAACAGGTTTTCTTGATTAA

mRNA sequence

ATGGACCTTAACCTTCCTTCCTCCCGCTTCCGCCATCGCAAGTCTCCCTCCTCCGAACGCTTTCTCGCTTCCTTCTCTTACCCCCCTGCTCGTACTGCAAACCCTAGCTCCACCAACGGCATAGACGACGATAACGAGCTCAACGAAGACGACGTCTTCTGGACTGGCGATTTTGCTGCCGATTCCGCCCACCATAGCCACTCCACTCCCTCCTCCTCCTCCTCTTCCACTCCTCGTCACCATATTCATCACCTCCAGCATCACAAGGGTTTTCCCCTGCCGGAGACCTTCGGAATCCTTGCTGCTCTCCCCGAGAACGAGGCCTCCTCCAGCCTTCGCAACTCTTCACATTTCTATCACAAGGCGTCCGTTTCGTCCTCGTCCTCGTCCTCCCCTTCGTCTTCTCGGATGATTCCGACGATCCCTAAACCTCCTCTGGAGCGATTGCCTCTTCCGATTTCGTCCTCGTTGAAGTACCAGTCCGCCCCTGTCAATGTGCCCATAATGTCGAAGGCGGTTCAGAGACAGCAGGAGATTGACGTGGATGATGTTGATGAAGAAGATGGGGAAATGTTGCCGCCCCATGAGATTGTGGCTAGAAGTCTGGCTCAGGCGCCGATGTTGTCTTGCTCAGTGCTCGAGGGTGCAGGAAGGACGTTAAAGGGCAGGGATCTTCGCCAGGTTCGCAACGCGGTTTGGAGACGAACAGGTTTTCTTGATTAA

Coding sequence (CDS)

ATGGACCTTAACCTTCCTTCCTCCCGCTTCCGCCATCGCAAGTCTCCCTCCTCCGAACGCTTTCTCGCTTCCTTCTCTTACCCCCCTGCTCGTACTGCAAACCCTAGCTCCACCAACGGCATAGACGACGATAACGAGCTCAACGAAGACGACGTCTTCTGGACTGGCGATTTTGCTGCCGATTCCGCCCACCATAGCCACTCCACTCCCTCCTCCTCCTCCTCTTCCACTCCTCGTCACCATATTCATCACCTCCAGCATCACAAGGGTTTTCCCCTGCCGGAGACCTTCGGAATCCTTGCTGCTCTCCCCGAGAACGAGGCCTCCTCCAGCCTTCGCAACTCTTCACATTTCTATCACAAGGCGTCCGTTTCGTCCTCGTCCTCGTCCTCCCCTTCGTCTTCTCGGATGATTCCGACGATCCCTAAACCTCCTCTGGAGCGATTGCCTCTTCCGATTTCGTCCTCGTTGAAGTACCAGTCCGCCCCTGTCAATGTGCCCATAATGTCGAAGGCGGTTCAGAGACAGCAGGAGATTGACGTGGATGATGTTGATGAAGAAGATGGGGAAATGTTGCCGCCCCATGAGATTGTGGCTAGAAGTCTGGCTCAGGCGCCGATGTTGTCTTGCTCAGTGCTCGAGGGTGCAGGAAGGACGTTAAAGGGCAGGGATCTTCGCCAGGTTCGCAACGCGGTTTGGAGACGAACAGGTTTTCTTGATTAA

Protein sequence

MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDNELNEDDVFWTGDFAADSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKAVQRQQEIDVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD

Homology

[Close]

BLAST of Lsi03G001280.1 vs. ExPASy TrEMBL
Match: A0A0A0LT40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165750 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.2e-116
Identity = 222/241 (92.12%), Postives = 232/241 (96.27%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDNELNEDDVFWTGDFAA 60
           MDLNLPSSRFRHR SPSSERFLASF  PP R++NPSST  +DDD+ELNEDDVFWTGDFA+
Sbjct: 1   MDLNLPSSRFRHRNSPSSERFLASFPSPPVRSSNPSSTTALDDDSELNEDDVFWTGDFAS 60

Query: 61  DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120
           DS HHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH
Sbjct: 61  DSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120

Query: 121 KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKA-VQRQQEI 180
           KASVSSSSSSSPSSSRMIPTIPKPPL+RLPLPIS+SLKYQSAPVNVPIMSKA VQRQ E+
Sbjct: 121 KASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEV 180

Query: 181 DVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240
           DVDDVDE+DGEMLPPHEIVARSLAQ+PMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL
Sbjct: 181 DVDDVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240

[Close]

BLAST of Lsi03G001280.1 vs. ExPASy TrEMBL
Match: A0A1S4E4F1 (uncharacterized protein LOC103499884 OS=Cucumis melo OX=3656 GN=LOC103499884 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.1e-115
Identity = 221/241 (91.70%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDNELNEDDVFWTGDFAA 60
           MDLNL SSRFRHR SPSSERFLASF  PP RT+NPSST  +DDD+ELNEDDVFWTGDFA+
Sbjct: 1   MDLNLHSSRFRHRNSPSSERFLASFPSPPVRTSNPSSTTALDDDSELNEDDVFWTGDFAS 60

Query: 61  DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120
           DS HHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH
Sbjct: 61  DSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120

Query: 121 KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKA-VQRQQEI 180
           KASVSSSSSSSPSSSRMIPTIPKPPL+RLPLPIS+SLKYQSAPVNVPIMSKA VQRQ E+
Sbjct: 121 KASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEV 180

Query: 181 DVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240
           DVD VDE+DGEMLPPHEIVARSLAQ+PMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL
Sbjct: 181 DVDYVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240

[Close]

BLAST of Lsi03G001280.1 vs. ExPASy TrEMBL
Match: A0A5A7SY45 (Senescence regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002880 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.1e-115
Identity = 221/241 (91.70%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDNELNEDDVFWTGDFAA 60
           MDLNL SSRFRHR SPSSERFLASF  PP RT+NPSST  +DDD+ELNEDDVFWTGDFA+
Sbjct: 1   MDLNLHSSRFRHRNSPSSERFLASFPSPPVRTSNPSSTTALDDDSELNEDDVFWTGDFAS 60

Query: 61  DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120
           DS HHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH
Sbjct: 61  DSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120

Query: 121 KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKA-VQRQQEI 180
           KASVSSSSSSSPSSSRMIPTIPKPPL+RLPLPIS+SLKYQSAPVNVPIMSKA VQRQ E+
Sbjct: 121 KASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEV 180

Query: 181 DVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240
           DVD VDE+DGEMLPPHEIVARSLAQ+PMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL
Sbjct: 181 DVDYVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240

[Close]

BLAST of Lsi03G001280.1 vs. ExPASy TrEMBL
Match: A0A6J1HPU4 (uncharacterized protein LOC111466606 OS=Cucurbita maxima OX=3661 GN=LOC111466606 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 217/243 (89.30%), Postives = 226/243 (93.00%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDN--ELNEDDVFWTGDF 60
           M+L+ PSSRFRHRKSP SERFL SFS P  R +NP+S N +DDDN  ELNEDDVFWTGDF
Sbjct: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60

Query: 61  AADSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHF 120
           AADSAHH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSSHF
Sbjct: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSK-AVQRQQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPL ISSSLKYQSAPVNVP+MSK AVQR Q
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180

Query: 181 EIDVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           EIDVDDVDE DGEMLPPHEIVARSLAQ+P+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

[Close]

BLAST of Lsi03G001280.1 vs. ExPASy TrEMBL
Match: A0A6J1G2B0 (uncharacterized protein LOC111450033 OS=Cucurbita moschata OX=3662 GN=LOC111450033 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.9e-110
Identity = 217/244 (88.93%), Postives = 227/244 (93.03%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDD---NELNEDDVFWTGD 60
           MDL  PSSRFRHRKSPSSERFL SFS P  R +NP+S N +D+D   +ELNEDDVFWTGD
Sbjct: 1   MDLTPPSSRFRHRKSPSSERFLLSFSSPSPRPSNPTSANALDNDDNNSELNEDDVFWTGD 60

Query: 61  FAADSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSH 120
           FAADSAHH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSS+
Sbjct: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSY 120

Query: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSK-AVQRQ 180
           FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVP+MSK AVQR 
Sbjct: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRH 180

Query: 181 QEIDVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240
           QEIDVDDVDE DGEMLPPHEIVARSLAQ+P+LSCSVLEGAGRTLKGRDLRQVRNAVWRRT
Sbjct: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240

[Close]

BLAST of Lsi03G001280.1 vs. NCBI nr
Match: XP_038894579.1 (uncharacterized protein LOC120083099 [Benincasa hispida])

HSP 1 Score: 443.0 bits (1138), Expect = 1.7e-120
Identity = 231/241 (95.85%), Postives = 235/241 (97.51%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDNELNEDDVFWTGDFAA 60
           MDLNLPS RFRHRKSPSSERFLASF  PP RTANPSSTNG+DDD ELNEDDVFWTGDFAA
Sbjct: 1   MDLNLPSFRFRHRKSPSSERFLASFHSPPVRTANPSSTNGVDDDTELNEDDVFWTGDFAA 60

Query: 61  DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120
           DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH
Sbjct: 61  DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120

Query: 121 KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKA-VQRQQEI 180
           KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKA VQRQQEI
Sbjct: 121 KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKAVVQRQQEI 180

Query: 181 DVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240
           DVDDVDE+DGEMLPPHEIVARSLAQ+P+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL
Sbjct: 181 DVDDVDEDDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240

[Close]

BLAST of Lsi03G001280.1 vs. NCBI nr
Match: KGN64943.1 (hypothetical protein Csa_022813 [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 2.5e-116
Identity = 222/241 (92.12%), Postives = 232/241 (96.27%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDNELNEDDVFWTGDFAA 60
           MDLNLPSSRFRHR SPSSERFLASF  PP R++NPSST  +DDD+ELNEDDVFWTGDFA+
Sbjct: 1   MDLNLPSSRFRHRNSPSSERFLASFPSPPVRSSNPSSTTALDDDSELNEDDVFWTGDFAS 60

Query: 61  DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120
           DS HHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH
Sbjct: 61  DSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120

Query: 121 KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKA-VQRQQEI 180
           KASVSSSSSSSPSSSRMIPTIPKPPL+RLPLPIS+SLKYQSAPVNVPIMSKA VQRQ E+
Sbjct: 121 KASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEV 180

Query: 181 DVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240
           DVDDVDE+DGEMLPPHEIVARSLAQ+PMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL
Sbjct: 181 DVDDVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240

[Close]

BLAST of Lsi03G001280.1 vs. NCBI nr
Match: XP_008461249.1 (PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903097.1 PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903098.1 PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903100.1 PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >KAA0035493.1 Senescence regulator [Cucumis melo var. makuwa] >TYK31034.1 Senescence regulator [Cucumis melo var. makuwa])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 221/241 (91.70%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDNELNEDDVFWTGDFAA 60
           MDLNL SSRFRHR SPSSERFLASF  PP RT+NPSST  +DDD+ELNEDDVFWTGDFA+
Sbjct: 1   MDLNLHSSRFRHRNSPSSERFLASFPSPPVRTSNPSSTTALDDDSELNEDDVFWTGDFAS 60

Query: 61  DSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120
           DS HHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH
Sbjct: 61  DSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHFYH 120

Query: 121 KASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKA-VQRQQEI 180
           KASVSSSSSSSPSSSRMIPTIPKPPL+RLPLPIS+SLKYQSAPVNVPIMSKA VQRQ E+
Sbjct: 121 KASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEV 180

Query: 181 DVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240
           DVD VDE+DGEMLPPHEIVARSLAQ+PMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL
Sbjct: 181 DVDYVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFL 240

[Close]

BLAST of Lsi03G001280.1 vs. NCBI nr
Match: XP_022967102.1 (uncharacterized protein LOC111466606 [Cucurbita maxima])

HSP 1 Score: 408.3 bits (1048), Expect = 4.6e-110
Identity = 217/243 (89.30%), Postives = 226/243 (93.00%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDDN--ELNEDDVFWTGDF 60
           M+L+ PSSRFRHRKSP SERFL SFS P  R +NP+S N +DDDN  ELNEDDVFWTGDF
Sbjct: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60

Query: 61  AADSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHF 120
           AADSAHH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSSHF
Sbjct: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSK-AVQRQQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPL ISSSLKYQSAPVNVP+MSK AVQR Q
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180

Query: 181 EIDVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           EIDVDDVDE DGEMLPPHEIVARSLAQ+P+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

[Close]

BLAST of Lsi03G001280.1 vs. NCBI nr
Match: XP_022945942.1 (uncharacterized protein LOC111450033 [Cucurbita moschata])

HSP 1 Score: 407.9 bits (1047), Expect = 6.0e-110
Identity = 217/244 (88.93%), Postives = 227/244 (93.03%), Query Frame = 0


Query: 1   MDLNLPSSRFRHRKSPSSERFLASFSYPPARTANPSSTNGIDDD---NELNEDDVFWTGD 60
           MDL  PSSRFRHRKSPSSERFL SFS P  R +NP+S N +D+D   +ELNEDDVFWTGD
Sbjct: 1   MDLTPPSSRFRHRKSPSSERFLLSFSSPSPRPSNPTSANALDNDDNNSELNEDDVFWTGD 60

Query: 61  FAADSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSH 120
           FAADSAHH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSS+
Sbjct: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSY 120

Query: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSK-AVQRQ 180
           FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVP+MSK AVQR 
Sbjct: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRH 180

Query: 181 QEIDVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240
           QEIDVDDVDE DGEMLPPHEIVARSLAQ+P+LSCSVLEGAGRTLKGRDLRQVRNAVWRRT
Sbjct: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240

[Close]

BLAST of Lsi03G001280.1 vs. TAIR 10
Match: AT3G15040.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-38
Identity = 121/238 (50.84%), Postives = 144/238 (60.50%), Query Frame = 0


Query: 33  ANPSSTNGIDD--DNELNEDDVFWTG-DFAADSAHHSHSTPSSSSSSTPRHHIHHLQHHK 92
           ++PSS   I D  D ELNEDD+F      A   A HS    S +   TP   +   +   
Sbjct: 10  SSPSSLATISDSADGELNEDDIFAIDISHAPPQARHS-PVSSPAKQQTPARQLQ--RSKS 69

Query: 93  GFPLPETFGILAALPENEASSSLRNSSHFYHK----------ASVSSSSSS-------SP 152
           G    E  GILAALPE+  SSS   S  F+HK          ++ SSSSSS       S 
Sbjct: 70  GLKNVEASGILAALPESSGSSSYL-SHVFHHKPAAALSTSVSSTASSSSSSGGGASAGSS 129

Query: 153 SSSRMIPTIPKPPLERLPLPIS--SSLKY-QSAPVNVPIMSKAVQRQQ-------EIDVD 212
           SS+R IPT PKPP ERLP   S     KY QSAPV VP++S A+  +        ++  D
Sbjct: 130 SSARAIPTAPKPPQERLPFSASFVGGGKYPQSAPVQVPLVSSAMMNRHKKEFKLTDVVDD 189

Query: 213 DVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 241
           D +EE+GEMLPPHEIVARSLAQ+ +LSCSVLEGAGRTLKGRDLRQVRNAV+RRTGF+D
Sbjct: 190 DEEEEEGEMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243

[Close]

BLAST of Lsi03G001280.1 vs. TAIR 10
Match: AT4G04630.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-15
Identity = 65/154 (42.21%), Postives = 83/154 (53.90%), Query Frame = 0


Query: 99  ILAALPENEASSSLRN--SSHFYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSS 158
           + + L E E SS       SHF    S SSSSSSSP + R    +             S 
Sbjct: 32  VWSVLREGETSSPEMKIPKSHF----SSSSSSSSSPWNIRRSKEV-------------SG 91

Query: 159 LKYQSAPVNVPIMSKAV------QRQQEIDV----DDVDEEDGEMLPPHEIVARSLAQAP 218
           +K  SAP+NVP  SK        +R   +      DD +++DG M+PPHE VAR LA+  
Sbjct: 92  VKQSSAPMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQ 151

Query: 219 MLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 241
           + S S+ EG GRTLKGRDL +VRNAV  +TGFL+
Sbjct: 152 ISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168

[Close]

BLAST of Lsi03G001280.1 vs. TAIR 10
Match: AT4G21970.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-14
Identity = 58/146 (39.73%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 105 ENEASSSLRNSSHFYHKASVSSS----SSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQ 164
           E E  S LR S     +  +S S    S+SS SS+R IP   +         +S   K  
Sbjct: 9   EEEVWSVLRESETQGPEMKMSKSNNLFSASSSSSARYIPKGNE---------VSGGAKQS 68

Query: 165 SAPVNVPIMSKAVQRQQEIDVDDV------DEEDGEMLPPHEIVARSLAQAPMLSCSVLE 224
           SAP+N+P  SK     ++     +      D+++G M+PPHE+VA+ LA+  + S S+ E
Sbjct: 69  SAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDEGSMVPPHELVAKRLARTQISSFSMCE 128

Query: 225 GAGRTLKGRDLRQVRNAVWRRTGFLD 241
           G GRTLKGRDL + RNAV  RTGFL+
Sbjct: 129 GIGRTLKGRDLSKTRNAVLTRTGFLE 145

[Close]

BLAST of Lsi03G001280.1 vs. TAIR 10
Match: AT1G11700.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-12
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 161 SAPVNVPIMSKAVQRQQEIDVDDVDEED----GEMLPPHEIVARSLAQAPMLS---CSVL 220
           SAPVNVP  SK  +      + + DEE+    G M+PPHE +A+S  +    S    SV 
Sbjct: 115 SAPVNVPDWSKIYRVNSVESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVF 174

Query: 221 EGAGRTLKGRDLRQVRNAVWRRTGF 239
           EG GRTLKGR+LR+VR+A+W +TGF
Sbjct: 175 EGVGRTLKGRELRRVRDAIWSQTGF 199

[Close]

BLAST of Lsi03G001280.1 vs. TAIR 10
Match: AT3G45210.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 103 LPENEASSSLRNSSHFYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSA 162
           LP +   +   +S   + ++ + S+ S SP   R + T  +   +  P  ++++    S 
Sbjct: 18  LPTDRTYNVTGDSEFEFDESDLYSNRSDSPEFRRKLITSNR---KSSPATVTTTTVASSL 77

Query: 163 PVNVPIMSKAVQRQQEIDVDDVDEEDGEMLPPHEIVARSLAQAPMLSCSVLEGAGRTLKG 222
           P+NV   SK + ++    +++ D+     LPPHE     LA+  M S SV EG GRTLKG
Sbjct: 78  PMNVQNWSKILGKENRKSIENDDDGGEGKLPPHEY----LAKTRMASFSVHEGIGRTLKG 137

Query: 223 RDLRQVRNAVWRRTGFLD 241
           RD+ +VRNA+  +TGFLD
Sbjct: 138 RDMSRVRNAILEKTGFLD 148

The following BLAST results are available for this feature:

BLAST of Lsi03G001280.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G001280.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT40	1.2e-116	92.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165750 PE=4 SV=1	[more]
A0A1S4E4F1	5.1e-115	91.70	uncharacterized protein LOC103499884 OS=Cucumis melo OX=3656 GN=LOC103499884 PE=...	[more]
A0A5A7SY45	5.1e-115	91.70	Senescence regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455...	[more]
A0A6J1HPU4	2.2e-110	89.30	uncharacterized protein LOC111466606 OS=Cucurbita maxima OX=3661 GN=LOC111466606...	[more]
A0A6J1G2B0	2.9e-110	88.93	uncharacterized protein LOC111450033 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]

BLAST of Lsi03G001280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894579.1	1.7e-120	95.85	uncharacterized protein LOC120083099 [Benincasa hispida]	[more]
KGN64943.1	2.5e-116	92.12	hypothetical protein Csa_022813 [Cucumis sativus]	[more]
XP_008461249.1	1.1e-114	91.70	PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903097.1 P...	[more]
XP_022967102.1	4.6e-110	89.30	uncharacterized protein LOC111466606 [Cucurbita maxima]	[more]
XP_022945942.1	6.0e-110	88.93	uncharacterized protein LOC111450033 [Cucurbita moschata]	[more]

BLAST of Lsi03G001280.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15040.1	1.3e-38	50.84	Protein of unknown function, DUF584	[more]
AT4G04630.1	2.7e-15	42.21	Protein of unknown function, DUF584	[more]
AT4G21970.1	5.0e-14	39.73	Protein of unknown function, DUF584	[more]
AT1G11700.1	2.1e-12	48.24	Protein of unknown function, DUF584	[more]
AT3G45210.1	1.5e-10	34.06	Protein of unknown function, DUF584	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 46..240 e-value: 9.6E-45 score: 153.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..143
None	No IPR available	PANTHER	PTHR33083:SF50	SUBFAMILY NOT NAMED	coord: 5..240
None	No IPR available	PANTHER	PTHR33083	EXPRESSED PROTEIN	coord: 5..240

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G001280	Lsi03G001280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G001280.1.exon.1	Lsi03G001280.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G001280.1.CDS.1	Lsi03G001280.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G001280.1	Lsi03G001280.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding