Lsi03G000560.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G000560.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Histone H2B
Location	chr03: 862490 .. 862918 (+)
Sequence length	429
RNA-Seq Expression	Lsi03G000560.1
Synteny	Lsi03G000560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCCGAGAAGAAGCCAGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCATCTGATAAGAAAAAGAAGAGAGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATTTTCAAGGTGCTCAAGCAAGTCCATCCCGACATTGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCAACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCCAAGCACGCCGTTTCCGAGGGTACCAAGGCTGTCACCAAGTTCACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAGCCAGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCATCTGATAAGAAAAAGAAGAGAGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATTTTCAAGGTGCTCAAGCAAGTCCATCCCGACATTGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCAACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCCAAGCACGCCGTTTCCGAGGGTACCAAGGCTGTCACCAAGTTCACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAGCCAGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCATCTGATAAGAAAAAGAAGAGAGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATTTTCAAGGTGCTCAAGCAAGTCCATCCCGACATTGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCAACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCCAAGCACGCCGTTTCCGAGGGTACCAAGGCTGTCACCAAGTTCACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 226.1 bits (575), Expect = 2.5e-58
Identity = 131/145 (90.34%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSVETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 224.6 bits (571), Expect = 7.3e-58
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKK-AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSVETY 60
           MAPKAEKKPAEKKPA E+K  AEKAPAEKKP+A KKLPK+    A DKKKKR KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 143
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSV 60
           MAPKAEKKPAEKKPA+     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy Swiss-Prot
Match: Q9LQQ4 (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 132/148 (89.19%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKL-PKDASDKKKKRAKKSVET 60
           MAP+AEKKPAEKK AA     E K AEKAPAEKKP+A KKL PK+A DKKKKR+KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 222.2 bits (565), Expect = 3.6e-57
Identity = 132/150 (88.00%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSV 60
           MAP+AEKKPAEKKPAA     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy TrEMBL
Match: A0A0A0LV55 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy TrEMBL
Match: A0A5A7SNI2 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00170 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy TrEMBL
Match: A0A6J1I594 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469341 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.0e-63
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy TrEMBL
Match: A0A6J1I3M0 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469340 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.0e-63
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA+DKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAADKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. ExPASy TrEMBL
Match: A0A6J1HJI6 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111464657 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.0e-63
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. NCBI nr
Match: KAE8652780.1 (hypothetical protein Csa_022685 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 5.6e-63
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 39  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 98

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 159 PGELAKHAVSEGTKAVTKFTSS 180

[Close]

BLAST of Lsi03G000560.1 vs. NCBI nr
Match: XP_038893815.1 (histone H2B.7-like [Benincasa hispida] >XP_038894882.1 histone H2B.7-like [Benincasa hispida] >KAA0032591.1 histone H2B.7 [Cucumis melo var. makuwa] >KGN64852.1 hypothetical protein Csa_022825 [Cucumis sativus] >KAA0032596.1 histone H2B.7 [Cucumis melo var. makuwa] >KAA0032602.1 histone H2B.7 [Cucumis melo var. makuwa] >TYK20883.1 histone H2B.7 [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 5.6e-63
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. NCBI nr
Match: XP_022964661.1 (histone H2B.7-like [Cucurbita moschata] >XP_022970348.1 histone H2B.7-like [Cucurbita maxima] >XP_023519437.1 histone H2B.7-like [Cucurbita pepo subsp. pepo] >KAG6583589.1 Histone H2B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019290.1 Histone H2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA+DKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAADKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. NCBI nr
Match: XP_022964641.1 (histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucurbita maxima] >XP_023519436.1 histone H2B.7-like [Cucurbita pepo subsp. pepo] >KAG6583590.1 Histone H2B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019291.1 Histone H2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. NCBI nr
Match: XP_038894881.1 (histone H2B.7 [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKP+AEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPKAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560.1 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-59
Identity = 131/145 (90.34%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSVETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lsi03G000560.1 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 132/148 (89.19%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKL-PKDASDKKKKRAKKSVET 60
           MAP+AEKKPAEKK AA     E K AEKAPAEKKP+A KKL PK+A DKKKKR+KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Lsi03G000560.1 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSV 60
           MAPKAEKKPAEKKPA+     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi03G000560.1 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 222.2 bits (565), Expect = 2.6e-58
Identity = 132/150 (88.00%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSV 60
           MAP+AEKKPAEKKPAA     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi03G000560.1 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 219.2 bits (557), Expect = 2.2e-57
Identity = 131/151 (86.75%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MAPK-----AEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA----SDKKKKRAKKS 60
           MAPK     AEKKPAEK PA EEK AEKAPAEKKP+A KKLPK+A     +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

The following BLAST results are available for this feature:

BLAST of Lsi03G000560.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZT0	2.5e-58	90.34	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]
O22582	7.3e-58	89.80	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
P40283	2.1e-57	88.00	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
Q9LQQ4	2.1e-57	89.19	Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3	[more]
O23629	3.6e-57	88.00	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]

BLAST of Lsi03G000560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV55	2.7e-63	99.30	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1	[more]
A0A5A7SNI2	2.7e-63	99.30	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00170 PE...	[more]
A0A6J1I594	6.0e-63	98.59	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469341 PE=3 SV=1	[more]
A0A6J1I3M0	6.0e-63	98.59	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469340 PE=3 SV=1	[more]
A0A6J1HJI6	6.0e-63	98.59	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111464657 PE=3 SV=1	[more]

BLAST of Lsi03G000560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652780.1	5.6e-63	99.30	hypothetical protein Csa_022685 [Cucumis sativus]	[more]
XP_038893815.1	5.6e-63	99.30	histone H2B.7-like [Benincasa hispida] >XP_038894882.1 histone H2B.7-like [Benin...	[more]
XP_022964661.1	1.2e-62	98.59	histone H2B.7-like [Cucurbita moschata] >XP_022970348.1 histone H2B.7-like [Cucu...	[more]
XP_022964641.1	1.2e-62	98.59	histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucu...	[more]
XP_038894881.1	1.2e-62	98.59	histone H2B.7 [Benincasa hispida]	[more]

BLAST of Lsi03G000560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46030.1	1.8e-59	90.34	Histone superfamily protein	[more]
AT1G07790.1	1.5e-58	89.19	Histone superfamily protein	[more]
AT5G59910.1	1.5e-58	88.00	Histone superfamily protein	[more]
AT3G45980.1	2.6e-58	88.00	Histone superfamily protein	[more]
AT2G28720.1	2.2e-57	86.75	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 126..139 score: 92.65 coord: 74..94 score: 75.74 coord: 96..113 score: 76.51 coord: 113..126 score: 92.45 coord: 55..73 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 45..141 e-value: 4.3E-73 score: 258.8
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..142
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 110..132
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..142 e-value: 1.3E-58 score: 198.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 27..142
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 6..118 e-value: 2.0E-22 score: 79.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	PANTHER	PTHR23428:SF296	HISTONE H2B.11-RELATED	coord: 5..142

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G000560	Lsi03G000560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G000560.1.exon.1	Lsi03G000560.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G000560.1.CDS.1	Lsi03G000560.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G000560.1	Lsi03G000560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity