Lsi02G023730.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G023730.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	nuclear transcription factor Y subunit B-1
Location	chr02: 30411328 .. 30411801 (+)
Sequence length	474
RNA-Seq Expression	Lsi02G023730.1
Synteny	Lsi02G023730.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAACACAGGCATGCCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCAGCGGTGTTGGCGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTAGGAAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTTGTGACGGGCGAGGCATCGGATAAGTGCCATAAAGAGAAGAGAAAGACTGTCAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAGTAACAATAATAATCATGATGCATGA

mRNA sequence

ATGGATGAAAACACAGGCATGCCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCAGCGGTGTTGGCGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTAGGAAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTTGTGACGGGCGAGGCATCGGATAAGTGCCATAAAGAGAAGAGAAAGACTGTCAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAGTAACAATAATAATCATGATGCATGA

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGCCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCAGCGGTGTTGGCGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTAGGAAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTTGTGACGGGCGAGGCATCGGATAAGTGCCATAAAGAGAAGAGAAAGACTGTCAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAGTAACAATAATAATCATGATGCATGA

Protein sequence

MDENTGMPERLVEFKYDFSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHDA

Homology

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BLAST of Lsi02G023730.1 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-42
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 40  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 99
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 100 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 138
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-38
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 19  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 78
           S G GG +  S    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QEC
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 66

Query: 79  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 137
           VSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG+
Sbjct: 67  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 23  GGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 82
           G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEF
Sbjct: 18  GSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEF 77

Query: 83  ISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 137
           ISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG+
Sbjct: 78  ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 80/124 (64.52%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 19  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 78
           S GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QEC
Sbjct: 12  SPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQEC 71

Query: 79  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERA 138
           VSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+ 
Sbjct: 72  VSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKV 131

Query: 139 QQNK 143
              K
Sbjct: 132 NSPK 135

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-37
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 25  STGGSSEEAGNGVGGV-VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFI 84
           S GG +    NG   +  +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFI
Sbjct: 8   SGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFI 67

Query: 85  SFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 138
           SFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+R++EGER
Sbjct: 68  SFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.6e-78
Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD 157
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNN 160

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.8e-77
Identity = 150/158 (94.94%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPER +EFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNN 155
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+N+NNNN
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNN 158

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 7   MPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 66
           MPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP
Sbjct: 1   MPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 60

Query: 67  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 126
           PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
Sbjct: 61  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 120

Query: 127 LRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD 157
           LRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Sbjct: 121 LRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNN 154

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.5e-72
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDFSS----GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MD+NT MPERLVEFKYDF++    GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN 149
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNNN
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 152

[Close]

BLAST of Lsi02G023730.1 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.0e-72
Identity = 142/162 (87.65%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDF-----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGR 60
           MD+NT MPERLVEFKYDF     S GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHDA 158
           FDDYAEPLRRYL+RYR++EGERAQQNKGCC     NNN HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCC-----NNNTHDA 157

[Close]

BLAST of Lsi02G023730.1 vs. NCBI nr
Match: XP_008451614.1 (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD 157
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNN 160

[Close]

BLAST of Lsi02G023730.1 vs. NCBI nr
Match: XP_011659350.1 (nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 5.7e-77
Identity = 150/158 (94.94%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPER +EFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNN 155
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+N+NNNN
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNN 158

[Close]

BLAST of Lsi02G023730.1 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 293.9 bits (751), Expect = 8.3e-76
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDFS----SGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERLVEFKYDF+    SGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN 150
           DDYAEPLRRYLVRYR+MEGERAQQNKGCCNNNN
Sbjct: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCNNNN 153

[Close]

BLAST of Lsi02G023730.1 vs. NCBI nr
Match: KAA0068030.1 (nuclear transcription factor Y subunit B-1 [Cucumis melo var. makuwa])

HSP 1 Score: 287.3 bits (734), Expect = 7.7e-74
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 7   MPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 66
           MPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP
Sbjct: 1   MPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 60

Query: 67  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 126
           PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
Sbjct: 61  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 120

Query: 127 LRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD 157
           LRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Sbjct: 121 LRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNN 154

[Close]

BLAST of Lsi02G023730.1 vs. NCBI nr
Match: XP_022991512.1 (nuclear transcription factor Y subunit B-1 [Cucurbita maxima])

HSP 1 Score: 280.8 bits (717), Expect = 7.2e-72
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDENTGMPERLVEFKYDFSS----GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MD+NT MPERLVEFKYDF++    GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN 149
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNNN
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 152

[Close]

BLAST of Lsi02G023730.1 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 172.2 bits (435), Expect = 3.4e-43
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 40  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 99
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 100 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 138
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of Lsi02G023730.1 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 157.5 bits (397), Expect = 8.6e-39
Identity = 80/124 (64.52%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 19  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 78
           S GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QEC
Sbjct: 12  SPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQEC 71

Query: 79  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERA 138
           VSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+ 
Sbjct: 72  VSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKV 131

Query: 139 QQNK 143
              K
Sbjct: 132 NSPK 135

[Close]

BLAST of Lsi02G023730.1 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 25  STGGSSEEAGNGVGGV-VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFI 84
           S GG +    NG   +  +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFI
Sbjct: 8   SGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFI 67

Query: 85  SFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 138
           SFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+R++EGER
Sbjct: 68  SFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of Lsi02G023730.1 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 155.2 bits (391), Expect = 4.3e-38
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 20  SGVGGSTGGSSEEAGNGVGGV--VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 79
           S  GG  GGS E  G+       V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETMQE
Sbjct: 4   SQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQE 63

Query: 80  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 139
           CVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYR+MEG+ 
Sbjct: 64  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDT 123

Query: 140 AQQNKG 144
               KG
Sbjct: 124 KGSGKG 129

[Close]

BLAST of Lsi02G023730.1 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 28  GSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 87
           G  ++ GN      +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+T
Sbjct: 9   GGHKDGGN---ASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFIT 68

Query: 88  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 138
           GEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YR++EGE+
Sbjct: 69  GEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

The following BLAST results are available for this feature:

BLAST of Lsi02G023730.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	4.8e-42	84.69	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
P25209	3.2e-38	64.41	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]
Q60EQ4	1.2e-37	64.91	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9SIT9	1.2e-37	64.52	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	2.1e-37	69.30	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Lsi02G023730.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BT19	5.6e-78	95.00	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A0A0K954	2.8e-77	94.94	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A5A7VLD2	3.7e-74	94.81	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1JM11	3.5e-72	90.79	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GM85	6.0e-72	87.65	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi02G023730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451614.1	1.2e-77	95.00	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
XP_011659350.1	5.7e-77	94.94	nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
XP_038876756.1	8.3e-76	96.08	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]
KAA0068030.1	7.7e-74	94.81	nuclear transcription factor Y subunit B-1 [Cucumis melo var. makuwa]	[more]
XP_022991512.1	7.2e-72	90.79	nuclear transcription factor Y subunit B-1 [Cucurbita maxima]	[more]

BLAST of Lsi02G023730.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	3.4e-43	84.69	nuclear factor Y, subunit B5	[more]
AT2G13570.1	8.6e-39	64.52	nuclear factor Y, subunit B7	[more]
AT5G47640.1	1.5e-38	69.30	nuclear factor Y, subunit B2	[more]
AT3G53340.1	4.3e-38	63.49	nuclear factor Y, subunit B10	[more]
AT4G14540.1	1.2e-37	66.36	nuclear factor Y, subunit B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 94..112 score: 34.21 coord: 113..131 score: 34.09 coord: 75..93 score: 51.32
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 30..154
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 47..111 e-value: 6.5E-27 score: 93.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 39..157 e-value: 2.3E-43 score: 149.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 44..153
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 30..154
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 78..94

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G023730	Lsi02G023730	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G023730.1.exon.1	Lsi02G023730.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G023730.1.CDS.1	Lsi02G023730.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G023730.1	Lsi02G023730.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding