Lsi01G003990.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G003990.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 3425653 .. 3428056 (-)
Sequence length676
RNA-Seq ExpressionLsi01G003990.1
SyntenyLsi01G003990.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCATTCCCTCTTCCTCTTCTTCCTCACAATGCCGTTCTCCATTGTTAGGCTTCATCATCCATCCTTTAAAAATTTCTATCAAGTAACTTTTAATCGCATCAACCTGAGAACCGTGGTGACAAGTAGAAACTCCGAGGTTCGAACTTGGATGAGAATGGTGTCGGCAACAAATGCTGGTTTGGCGATTGGGCTCGACTTGAAATACAATGGTGATGGAGTTCCGGTTCTCCTCTCAATCTGTGTAGGAGTTGACTGCCTACTGTTTACACTCACAACCAACCAAACCTCCAGTCAATTGAGGTATTTTCTGATACAGGATTCTTGTGCATTTGTTGCATTAAATGTGTATCGGAAGAGCCGGGCATTACGTAGGCATTGGCCTACTTTGTTCATCATCTTGCTGCCCAGCTGGGACTGAGAATCAAGCAAGATGGCCGTGCACCAACATTCACGGACGATATCACCCCAAGACAGGTGAGGCACATGCTTTCATTTCAGCTCAAATAGTTGCTCGACTGGGATGACTTTTACCATACTCATTGCTTGCTTCCTTCTCTGCTTTTACTTCTTGAGTACTCTGTTTTTTTATTTTTCGTTTACTTGGTTTGGTTGAGGTGATTATTAGAAGATTATATGATGTTTAATCATTTAGAAGATTATATGCTGTTTAATCCATTAGAATTTGATATGTGTATGCTTTTATCCTATGAATGAAACAAGTAGTGATTTAATCTTCTATTTCTCTGGAACGTTTCAGTGCTTATATGTTCAAATTATTGGCACAAGTAATGATTTAAGTTTATCCCTACTGGATACAAGCATACATTTCGCGACTACAGTAGTGAAAAAATAATAATAATAAAAAAAAAAAAAAAAAAAAGAAATCTGATAAGAACAATTTTTGGGCTATGCAATTGGATTTGGCCCATTTTTTGCAAAATGTTTTATATTGTAATATGATTGCTATTATTTTGAGCCTAACTTGTGATTGATACCATACAACCACCCCCGACTTTTTAATAAATAACATCTCCGTCTCTTCAACACTTATAAAACCTTGAGTAAATTTTAAAAGTAAACAACACAGCATAGAAAACCATAGTTTATGAGATCTAACCATGATTTCAGAAAGGTCTAAACAAGCTTAACTATGAAAGGCTAAAATGAATCCAAAAACTACATGGATGGTCCACTGAAGAAACAAACAGTTTCCATTCCACGAAGAGGCTGTACGTATTCAAACTTAGCCGCTCATGTTTTTGTCCCAAAGCCATGATACAATCATAAAAGCTATTTCAATCATCAATAATAATGCTAAATTACAATAGCTTCTCTATTTCTCTCCTTTCTTCGCCAATCAAGTTTAAGCTATAAAATCACTGTGTGAGGTTTTAAAAAATGACAAATTTAGGATGATTTTTCCTCAAAAATTAGATCATAACACGTTGTTGACATGATCCAATAGGTTGTTGAGGATGCTTAGGAAGACGCAATTCTTTTGGGTTGGGTAAAACAAATTGTTTAGTCCATGAAAAATCTTCTTCCATCTTCCACACATGGTACTTGTCCATCCTCATGAAGCCGGTGGAAATAGTTAGATAGAGGGTGCCATCAAAAACTCCAAGGAAAAAAATAACTTCGCCATTTTGCGGAAATGAAATTGTCTCCAATTTCTCATTTTCTATGTCCAAACGGTAAATGACATTAGTAAAATCATGTGGGTTCAGCTCGTCTCCGATCCAATAGAGGCCTCCATTGAAATAAACGCCATGCTCTTCAGTGACATATGAAGGCAAAACCCCAACAGGGGTCCAATCGCCACTTGTCCCGAATCTAAAAATCTCTACCAAGGATTTATCACGTACAGAGGATATTCGAGCTATTTTGTACTGCTTTGTTTTAGGGCTGAATCCTAATCCGTAGCTATAGGTTCCACCACCAGGTGCTTTCAATTTTTCTAGGGGAAATTTTATGTACTCATTTGTCATGGGATTACATATGTAAAGAACACTAGGTACAGGTAATGATCTTAGTATTTGTTTAGAGATAAGAAAACAAAAGAGTCCATTGCAGAAGTTGACAACGGTGATCCAACGGGAGGAAAACCTTAAACGAGGCAACACTACTCATCCCTTCCAAATGTTTAGGATCGAAGTCCACGCAATGGACATTGCGAGAGGGAAGAGTATACGCAAACAAGAGGTTGGAAATTACACACGAGCCTGCAACTCGGCAAATTGACGAAGTCGACGTTAGAGAGTATTACATGAATGATATCAGCTGGAAGCATCGAATTTATGTTCCGCTTCTTCGCCATCCTCGACCAGCCGCCAATGAATCTAAATATCCAATCCAAGTGAACAACCAGTTTTCATATTTAGGTTTTCTACTAGATCTTCTA

mRNA sequence

CAACCATTCCCTCTTCCTCTTCTTCCTCACAATGCCGTTCTCCATTGTTAGGCTTCATCATCCATCCTTTAAAAATTTCTATCAAGTAACTTTTAATCGCATCAACCTGAGAACCGTGGTGACAAGTAGAAACTCCGAGGTTCGAACTTGGATGAGAATGGTGTCGGCAACAAATGCTGGTTTGGCGATTGGGCTCGACTTGAAATACAATGGTGATGGAGTTCCGGTTCTCCTCTCAATCTGTGTAGGAGTTGACTGCCTACTGTTTACACTCACAACCAACCAAACCTCCAGTCAATTGAGAGCCGGGCATTACGTAGGCATTGGCCTACTTTGTTCATCATCTTGCTGCCCAGCTGGGACTGAGAATCAAGCAAGATGGCCGTGCACCAACATTCACGGACGATATCACCCCAAGACAGGATCGAAGTCCACGCAATGGACATTGCGAGAGGGAAGAGTATACGCAAACAAGAGGTTGGAAATTACACACGAGCCTGCAACTCGGCAAATTGACGAAGTCGACGTTAGAGAGTATTACATGAATGATATCAGCTGGAAGCATCGAATTTATGTTCCGCTTCTTCGCCATCCTCGACCAGCCGCCAATGAATCTAAATATCCAATCCAAGTGAACAACCAGTTTTCATATTTAGGTTTTCTACTAGATCTTCTA

Coding sequence (CDS)

ATGCCGTTCTCCATTGTTAGGCTTCATCATCCATCCTTTAAAAATTTCTATCAAGTAACTTTTAATCGCATCAACCTGAGAACCGTGGTGACAAGTAGAAACTCCGAGGTTCGAACTTGGATGAGAATGGTGTCGGCAACAAATGCTGGTTTGGCGATTGGGCTCGACTTGAAATACAATGGTGATGGAGTTCCGGTTCTCCTCTCAATCTGTGTAGGAGTTGACTGCCTACTGTTTACACTCACAACCAACCAAACCTCCAGTCAATTGAGAGCCGGGCATTACGTAGGCATTGGCCTACTTTGTTCATCATCTTGCTGCCCAGCTGGGACTGAGAATCAAGCAAGATGGCCGTGCACCAACATTCACGGACGATATCACCCCAAGACAGGATCGAAGTCCACGCAATGGACATTGCGAGAGGGAAGAGTATACGCAAACAAGAGGTTGGAAATTACACACGAGCCTGCAACTCGGCAAATTGACGAAGTCGACGTTAGAGAGTATTACATGAATGATATCAGCTGGAAGCATCGAATTTATGTTCCGCTTCTTCGCCATCCTCGACCAGCCGCCAATGAATCTAAATATCCAATCCAAGTGAACAACCAGTTTTCATATTTAGGTTTTCTACTAGATCTTCTA

Protein sequence

MPFSIVRLHHPSFKNFYQVTFNRINLRTVVTSRNSEVRTWMRMVSATNAGLAIGLDLKYNGDGVPVLLSICVGVDCLLFTLTTNQTSSQLRAGHYVGIGLLCSSSCCPAGTENQARWPCTNIHGRYHPKTGSKSTQWTLREGRVYANKRLEITHEPATRQIDEVDVREYYMNDISWKHRIYVPLLRHPRPAANESKYPIQVNNQFSYLGFLLDLL
Homology
The following BLAST results are available for this feature:
BLAST of Lsi01G003990.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003990.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003990.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003990.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi01G003990Lsi01G003990gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G003990.1.exon.3Lsi01G003990.1.exon.3exon
Lsi01G003990.1.exon.2Lsi01G003990.1.exon.2exon
Lsi01G003990.1.exon.1Lsi01G003990.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G003990.1.CDS.3Lsi01G003990.1.CDS.3CDS
Lsi01G003990.1.CDS.2Lsi01G003990.1.CDS.2CDS
Lsi01G003990.1.CDS.1Lsi01G003990.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G003990.1.five_prime_UTR.1Lsi01G003990.1.five_prime_UTR.1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi01G003990.1Lsi01G003990.1-proteinpolypeptide