Lcy13g016500.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy13g016500.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr13: 46324348 .. 46324824 (+)
Sequence length	453
RNA-Seq Expression	Lcy13g016500.1
Synteny	Lcy13g016500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGAGGATGGGATATGTTCGATTTGCAAGAGGGAGGAAAAGTCTGTGAACCACGTACTCCTAGATTGTGAGCTGGCCAGAGCTTTTTGGTTTGGATCCCCTTTGCAACTGGACACAAGGGGCTACAAGGCACTGAGGTTTGAAGAGAGCTTGGATAAAATATATGCGAAGCTGGTGAGAAGAGAGCAAATGGAGGAGGCGTTATGCTTTCTCGCCTTTGGGCTGTGGAGGGTTTGGAAGGCAAGAAATGAGTAGGTGTTCGAGAACAAGAGCACCGATTTGGAGCTGTCCATTGTCTCTGTGAGAGAGGAGGTTGGAGAGTTCATGAGAATGATGGAGGAGATCAGATGTGGAAGGGAAATGAGGTGTAGTGCAACTGAGCAACAGATAGACAATGAAAACTCATGGCCAACAGTCTGGGTTGATGCGGCTTGTCTCAAGGAGTCGTATGCTACTGGAATGGGACTGGTTTAA

mRNA sequence

ATGCACGAGGATGGGATATGTTCGATTTGCAAGAGGGAGGAAAAGTCTGTGAACCACGTACTCCTAGATTGTGAGCTGGCCAGAGCTTTTTGGTTTGGATCCCCTTTGCAACTGGACACAAGGGGCTACAAGGCACTGAGGTTTGAAGAGAGCTTGGATAAAATATATGCGAAGCTGGTGAGAAGAGAGCAAATGGAGGAGGCGTTATGCTTTCTCGCCTTTGGGCTGTGGAGGGTGTTCGAGAACAAGAGCACCGATTTGGAGCTGTCCATTGTCTCTGTGAGAGAGGAGGTTGGAGAGTTCATGAGAATGATGGAGGAGATCAGATGTGGAAGGGAAATGAGGTGTAGTGCAACTGAGCAACAGATAGACAATGAAAACTCATGGCCAACAGTCTGGGTTGATGCGGCTTGTCTCAAGGAGTCGTATGCTACTGGAATGGGACTGGTTTAA

Coding sequence (CDS)

ATGCACGAGGATGGGATATGTTCGATTTGCAAGAGGGAGGAAAAGTCTGTGAACCACGTACTCCTAGATTGTGAGCTGGCCAGAGCTTTTTGGTTTGGATCCCCTTTGCAACTGGACACAAGGGGCTACAAGGCACTGAGGTTTGAAGAGAGCTTGGATAAAATATATGCGAAGCTGGTGAGAAGAGAGCAAATGGAGGAGGCGTTATGCTTTCTCGCCTTTGGGCTGTGGAGGGTGTTCGAGAACAAGAGCACCGATTTGGAGCTGTCCATTGTCTCTGTGAGAGAGGAGGTTGGAGAGTTCATGAGAATGATGGAGGAGATCAGATGTGGAAGGGAAATGAGGTGTAGTGCAACTGAGCAACAGATAGACAATGAAAACTCATGGCCAACAGTCTGGGTTGATGCGGCTTGTCTCAAGGAGTCGTATGCTACTGGAATGGGACTGGTTTAA

Protein sequence

MHEDGICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQMEEALCFLAFGLWRVFENKSTDLELSIVSVREEVGEFMRMMEEIRCGREMRCSATEQQIDNENSWPTVWVDAACLKESYATGMGLV

Homology

[Close]

BLAST of Lcy13g016500.1 vs. ExPASy TrEMBL
Match: A0A6J5U034 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15037 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 4   DGICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRRE 63
           D  C +C  E +S  H+   CE AR FWFGS +QLD        F E  D +  K  + +
Sbjct: 492 DNTCVLCGYEGESQVHIFFRCEHARVFWFGSSIQLDASQLIGEEFSECWDNLLQKYEKHQ 551

Query: 64  QMEEALCFLAFGLWRVFENKST 86
             +E L  + FGLWR+++ +++
Sbjct: 552 NSQEILQVVVFGLWRLWKTRNS 573

[Close]

BLAST of Lcy13g016500.1 vs. ExPASy TrEMBL
Match: M5WF53 (zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa024911mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 0


Query: 7   CSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQME 66
           C +C    K+  H+   CE+AR FWF SP  LD  G +   F    + +  K  + E+M+
Sbjct: 250 CLLCGNNGKTEVHLFFRCEIARLFWFASPSHLDVHGVEGEDFLSCWECLLQKFAQVEKMD 309

Query: 67  EALCFLAFGLWR--------VFENKSTD-LELSI---VSVREEVGEFMRMMEEIRCGREM 120
           E L  +AFGLWR        VFE +S D ++L       +R E GE +R       GR +
Sbjct: 310 EILQIVAFGLWRIWKWRNAVVFERQSLDPMDLGRGVGWVIRTEWGELLR-----ASGRGI 369

[Close]

BLAST of Lcy13g016500.1 vs. ExPASy TrEMBL
Match: A0A6J5YDN0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07
Identity = 33/113 (29.20%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 5   GICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQ 64
           G C  C  ++++  H+  +C+ ARAFWF SPLQLD        F  +   +   L   E 
Sbjct: 224 GECGFCGFQDETQAHIFFECDFARAFWFASPLQLDVSKLAGEDFISTWQHMMTTLNSSEH 283

Query: 65  MEEALCFLAFGLWR--------VFENKSTDLELSIVSVREEVGEFMRMMEEIR 110
             EA+ +  FGLWR        VF+    D   +++ + ++V EF    ++++
Sbjct: 284 AAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQ 336

[Close]

BLAST of Lcy13g016500.1 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07
Identity = 33/113 (29.20%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 5   GICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQ 64
           G C  C  ++++  H+  +C+ ARAFWF SPLQLD        F  +   +   L   E 
Sbjct: 669 GECGFCGFQDETQAHIFFECDFARAFWFASPLQLDVSKLAGEDFISTWQHMMTTLNSSEH 728

Query: 65  MEEALCFLAFGLWR--------VFENKSTDLELSIVSVREEVGEFMRMMEEIR 110
             EA+ +  FGLWR        VF+    D   +++ + ++V EF    ++++
Sbjct: 729 AAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQ 781

[Close]

BLAST of Lcy13g016500.1 vs. ExPASy TrEMBL
Match: A0A6J5VSP2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07
Identity = 33/113 (29.20%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 5   GICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQ 64
           G C  C  ++++  H+  +C+ ARAFWF SPLQLD        F  +   +   L   E 
Sbjct: 162 GECGFCGFQDETQAHIFFECDFARAFWFASPLQLDVSKLAGEDFISTWQHMMTTLNSSEH 221

Query: 65  MEEALCFLAFGLWR--------VFENKSTDLELSIVSVREEVGEFMRMMEEIR 110
             EA+ +  FGLWR        VF+    D   +++ + ++V EF    ++++
Sbjct: 222 AAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQ 274

[Close]

BLAST of Lcy13g016500.1 vs. NCBI nr
Match: XP_028948120.1 (uncharacterized protein LOC114820937 [Malus domestica])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-09
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 4   DGICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRRE 63
           + IC +C   ++S NH+   CE +  FWF SPL +++       F ES DKI +++   E
Sbjct: 165 ENICGVCHTFDESENHLFFHCEFSHRFWFCSPLHINSHELAGADFLESWDKICSRIKNME 224

Query: 64  QMEEALCFLAFGLWRVFENKS 85
           + EE L  +AFGLWR+++N++
Sbjct: 225 KKEEILQEVAFGLWRLWKNRN 245

[Close]

BLAST of Lcy13g016500.1 vs. NCBI nr
Match: CAB4269469.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 4   DGICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRRE 63
           D  C +C  E +S  H+   CE AR FWFGS +QLD        F E  D +  K  + +
Sbjct: 492 DNTCVLCGYEGESQVHIFFRCEHARVFWFGSSIQLDASQLIGEEFSECWDNLLQKYEKHQ 551

Query: 64  QMEEALCFLAFGLWRVFENKST 86
             +E L  + FGLWR+++ +++
Sbjct: 552 NSQEILQVVVFGLWRLWKTRNS 573

[Close]

BLAST of Lcy13g016500.1 vs. NCBI nr
Match: XP_020421443.1 (uncharacterized protein LOC109949733 [Prunus persica])

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-07
Identity = 33/88 (37.50%), Postives = 45/88 (51.14%), Query Frame = 0


Query: 7   CSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQME 66
           C +C    K+  H+   CE+AR FWF SP  LD  G +   F    + +  K  + E+M+
Sbjct: 92  CLLCGNNGKTEVHLFFRCEIARLFWFASPSHLDVHGVEGEDFLSCWECLLQKFAQVEKMD 151

Query: 67  EALCFLAFGLWR--------VFENKSTD 87
           E L  +AFGLWR        VFE +S D
Sbjct: 152 EILQIVAFGLWRIWKWRNAVVFERQSLD 179

[Close]

BLAST of Lcy13g016500.1 vs. NCBI nr
Match: CAB4321714.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-07
Identity = 33/113 (29.20%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 5   GICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQ 64
           G C  C  ++++  H+  +C+ ARAFWF SPLQLD        F  +   +   L   E 
Sbjct: 224 GECGFCGFQDETQAHIFFECDFARAFWFASPLQLDVSKLAGEDFISTWQHMMTTLNSSEH 283

Query: 65  MEEALCFLAFGLWR--------VFENKSTDLELSIVSVREEVGEFMRMMEEIR 110
             EA+ +  FGLWR        VF+    D   +++ + ++V EF    ++++
Sbjct: 284 AAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQ 336

[Close]

BLAST of Lcy13g016500.1 vs. NCBI nr
Match: CAB4291403.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-07
Identity = 33/113 (29.20%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 5   GICSICKREEKSVNHVLLDCELARAFWFGSPLQLDTRGYKALRFEESLDKIYAKLVRREQ 64
           G C  C  ++++  H+  +C+ ARAFWF SPLQLD        F  +   +   L   E 
Sbjct: 162 GECGFCGFQDETQAHIFFECDFARAFWFASPLQLDVSKLAGEDFISTWQHMMTTLNSSEH 221

Query: 65  MEEALCFLAFGLWR--------VFENKSTDLELSIVSVREEVGEFMRMMEEIR 110
             EA+ +  FGLWR        VF+    D   +++ + ++V EF    ++++
Sbjct: 222 AAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQ 274

The following BLAST results are available for this feature:

BLAST of Lcy13g016500.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g016500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5U034	1.3e-07	35.37	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
M5WF53	1.7e-07	34.40	zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa024911mg ...	[more]
A0A6J5YDN0	3.8e-07	29.20	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=...	[more]
A0A6J5WPU6	3.8e-07	29.20	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5VSP2	3.8e-07	29.20	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 S...	[more]

BLAST of Lcy13g016500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028948120.1	2.2e-09	38.27	uncharacterized protein LOC114820937 [Malus domestica]	[more]
CAB4269469.1	2.7e-07	35.37	unnamed protein product [Prunus armeniaca]	[more]
XP_020421443.1	6.0e-07	37.50	uncharacterized protein LOC109949733 [Prunus persica]	[more]
CAB4321714.1	7.8e-07	29.20	unnamed protein product [Prunus armeniaca]	[more]
CAB4291403.1	7.8e-07	29.20	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lcy13g016500.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy13g016500	Lcy13g016500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy13g016500.1.exon1	Lcy13g016500.1.exon1	exon
Lcy13g016500.1.exon2	Lcy13g016500.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy13g016500.1.cds1	Lcy13g016500.1.cds1	CDS
Lcy13g016500.1.cds2	Lcy13g016500.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy13g016500.1	Lcy13g016500.1-protein	polypeptide