Lcy12g017520.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy12g017520.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 45153444 .. 45157217 (+)
Sequence length	830
RNA-Seq Expression	Lcy12g017520.1
Synteny	Lcy12g017520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGATAAGACAGAACCCACGCTTCTAATTGATTAATGAAGACAGAGAAAACCCACCAAAAAAAAAAAAAGAAAAAAAAATTAAAAACTTTGCCTTTTTGGTTCTTTTTCTTCTTTCTCTCTTTTCTCTACCCTAAACCCTAATTAATTAAAAACTTTCATATGGGTCTGTGGAATTATGAGAATTTTTGCTTTTTTGGCATTTTTCCTCATATGGGTTTCCAGATTTTTCTGATTTTATTTGACCCATTTTCTCAAAACCTCATTTTTTTTAAAAAAAAATTATGTTCTTGTTGTTGAATGGCGATGGTGTTTGTAAAATTTGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTATAATTATATGCCATTGCTCTTGTGTGCTCACTTCTCTTTCTGTCAGCTTCCATCGCCAATTCCTTCTTCTTTTTTGAAAAATTTCTGTTATTTTTATGTTATATTTGTGTAATTGAATTGAGAGGTTCATATATTGTTCTAATTAAAGTGTTGCTTTTGATGATTTTGTTTGTGTAATTTATCACTTTGTGGAATCGATGGACTCTCCAATTTTACTTCAATTTTCATCTCTTCTCTTCCAGGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACTTTTTTTTTTCTTTTTTTTTTAATTTTTTAATTTTTTCTACTTCAAATCTTTTGTTTCATGGGAGAATTGAGATGGGTTTTCACATCTTGAGCTGTAAATCCCATTTTTAGGCTCAATGATTTTCATTCAATTGGGTTTTGGTCTCATAATTGAAACATCAATCCATTAGAAATGTCTCTTTTTTTTTTTTTTTAATTATTATTGTTTTTTCTGGATATTATTAAAGGGGTGTTTTGAAAATTCTTGTAATTTCCATTATTACCATTGCTTCATTAATTGAATGTGTGATTCTGTTGAGATTTGACAGATAAATTTCTCTTTTTTCTTCTTCTTCTTCTTCCCCTTTTTTCCATGGTTCTTTTTGAGCTCTAGAACAGATGTTAATGGAGGAGGATCTACAAAGAAAAGCTCAAGATGTTTCATTGGCAGGATTTTTCAACAAGGAAACTGGTAAATTTCTTTTTTTTTTTTTTGAATTTTTTAACTTAATTTTGTTTTGAAGATTATCTTGTCCTACATTTTAAGACAGTCGTTCGTGAAATTGCAGTGACAAATAAAGTTAATTGGAACTTTTTTTTCTATTTACTTAATTTTGGAAGTCAATTATTACTTCATTGACTTGTTAAATATCTTTTTGTTTTAGTGGTAATTACTTTAAACTGAATGCATATAATTATAAGTTAATTAGATATTGCCTTCTTGATGTGTATATCCATCTTTCTTGGTTTAACTGTTTATAGTTGCTTGATTGGTTCACTTAAATTCATTCTTGTTATCATTGTCATTTCACTTTGATATAATTGGATATTGACTTGCAGACCGATCGAGCTCGAATAGATCCATTTGTTATCTAATACTATAGATTACGTTAGCCATTAAATTAGAGCGATCACTTGGGGAGCATAATTGGGAATAATGTAGCTACGAGAGATTTTCGTTTGTGATATAGACTACTTCTTTCGTTACCGTCTTGGAGCTTGTGCGAGCTCGGTGTGTGTGTGATGAGTCTTTTCTTTTAACTTAACGTTGAACGAGGTTCTTTTTTCTTCTTTGAGTTCAACAAATATGGGTGGGAGGGATCAAAACTTCCAACCTTATGAAAGACGTAATAGTTCTTTCGATAATAAGCTAGGTGAGTGTTTCGTCTTAAGAATGTTTAAGCAAAAATGTCAAGTCCAAGAATACGTTACAATACATTTGTTGCAGCTTTTTACATTTATTCGTATGTTTGTTTCGGTATTTTGATTTTCGACATCACATTCAAGATTTTTTTTTTTCCATTTACTCTTCTACTACTACTTGATGGTCTTATATGGTTTTAAAAAATGGATTCTCTCAAATCTTCTTTATTAGCTTTTGTGAGCAGTTAATGCCTTTGAATGGGACAAATATTCCTTGAAGAAATCTTGGTTTGTTTTATAATCTATAGAAGTGCTTCTTTAAAGCTTTCATCAGTTGTCTTAGATAATAATCTATATAACAGATTAAGTATTAAACATTTCTTGGGCTGTTGAGATTTAACAATGCTTATTTCATATTCTTTCATCACAAGGAAAATCAATAATAGAAAGAAGATCTTGTGTGATAGTTGGTTCAGTTGGTAGGTGATTTTGTAGCTATATGTTGTTCATTTCAAGATATACTAATTTTTCTAATATATATTTATATATATATATATATATATATATATATATGTCAATGAACCATATGATACTAATTTCTTGTAAACTTTCATTTATGTATCATATAACACCTGTTTGCGTTCCTTTCAAGCGATGTCGATATGCTTATATCTCGGATTATGAATAATGTTCATTAGATTTTTAGTTGATACGTCGATGTTAAAAAGAATATTCATTATTTATTCTTTTTTCATCCTCTACCTTCTGCATTCTTTGTTTGTATGTTTATGTGACCAAATGGTGAGGTTGGGGGCTTTTTCAAAATGGCTTATGGCTTTATTTGTTGGCCTTCAAAGAAAGTGATTGAAGAGCTAAAAGCTTTCTTGAGTGTGTTTTAATCCCAATTGAAAAATAAAAAGACTTGTTTCTTATCAGAATGTGAAGATCTTCACATGGTTATATATCTAGTGATTCAGTTCAATTATTTGACTCGTAGCTTTCCAAGCAGTCGAGTTGTCTGCTGCAAAATAGTTTGTCGAAAAACTTTGCAAATTTTGGTTTCTAGCACACAAATTTACAAATATATGATCCAACAATGATTCACATCTCTGATTACTTTTTCTTGATTCAAGCTTATATGCTAGATGAGCGAGGAGAATGAAGTTTCCCTCACTGAGCAATGGATGGAGCTTGGCTCGAAGCCATCCCCATGTCAATGAGGCTGGAAGCAAAGGGGACCGGAAGTGCGTCGAACGGTAGAATCATACCCATGAACACATTCTACGAATAAAAATTCTGAGAGGGTTGGACGAAACAATGTCTCTACTCGTCTGATTCAGGCATTCGATTGAGCATTCAATAATAAAGATTGGCTTTAGGTAAGGAAAAAGTTGCTGGTTGAGGCTGAAAATGGGTTTAGATTGAACTTTTACTCTTAACTTCAAAAGGATATGGTTTTTTGACTTCCACACAGATAAGTAGTAGTTGGTAGGCTTGGTAAAGCAATTTTTTAATATACATTATTGCTGTACTTTTCATACTCTATTTAGGCCTCTTGGTATATATTTTGGGGGAAATAAAACGTTTTACTTTGAGATATAGGTAGCAGAAATAGATCATAAAAAGTAAGTATACAAAGTTCCTTGGCCTGTTGCATTAATAATTATAAAATGAAATCTTTTAGCATCTGACTTGGATTATGTCAAAATACTTGCAACACCCCAAAACGGATCACTTCTCATCTAAAAACAATCATTCCAATCAAATATTGCTTCATTCTAAAAATTTGGTATGATATTGTTTTTCAGTACATGGGATTTTCTTCATAAAAGTGGAGTTTCACACATCTGTAACTGACTGTTGTTTGAATCACTTGCAGAAAGAGAAGGGTGTGAGCTGCAGCCTGCCAAGGAAGGAACCAATCACCAAAAAGACGAAAGAAGAACATATAATCTCATCGGTTCGCGTTAAACGAATCAGTTGTTAG

mRNA sequence

AAAAAGATAAGACAGAACCCACGCTTCTAATTGATTAATGAAGACAGAGAAAACCCACCAAAAAAAAAAAAAGAAAAAAAAATTAAAAACTTTGCCTTTTTGGTTCTTTTTCTTCTTTCTCTCTTTTCTCTACCCTAAACCCTAATTAATTAAAAACTTTCATATGGGTCTGTGGAATTATGAGAATTTTTGCTTTTTTGGCATTTTTCCTCATATGGGTTTCCAGATTTTTCTGATTTTATTTGACCCATTTTCTCAAAACCTCATTTTTTTTAAAAAAAAATTATGTTCTTGTTGTTGAATGGCGATGGTGTTTGTAAAATTTGAAGTTGACAGAAGAGAGTGAGCACACAGAGGCTTTTGGTATAATTATATGCCATTGCTCTTGTGTGCTCACTTCTCTTTCTGTCAGCTTCCATCGCCAATTCCTTCTTCTTTTTTGAAAAATTTCTGTTATTTTTATGTTATATTTGTGTAATTGAATTGAGAGGTTCATATATTGTTCTAATTAAAGTGTTGCTTTTGATGATTTTGTTTGTGTAATTTATCACTTTGTGGAATCGATGGACTCTCCAATTTTACTTCAATTTTCATCTCTTCTCTTCCAGATGTTAATGGAGGAGGATCTACAAAGAAAAGCTCAAGATGTTTCATTGGCAGGATTTTTCAACAAGGAAACTGACTACTTCTTTCGTTACCGTCTTGGAGCTTGTGCGAGCTCGAAAGAGAAGGGTGTGAGCTGCAGCCTGCCAAGGAAGGAACCAATCACCAAAAAGACGAAAGAAGAACATATAATCTCATCGGTTCGCGTTAAACGAATCAGTTGTTAG

Coding sequence (CDS)

ATGGACTCTCCAATTTTACTTCAATTTTCATCTCTTCTCTTCCAGATGTTAATGGAGGAGGATCTACAAAGAAAAGCTCAAGATGTTTCATTGGCAGGATTTTTCAACAAGGAAACTGACTACTTCTTTCGTTACCGTCTTGGAGCTTGTGCGAGCTCGAAAGAGAAGGGTGTGAGCTGCAGCCTGCCAAGGAAGGAACCAATCACCAAAAAGACGAAAGAAGAACATATAATCTCATCGGTTCGCGTTAAACGAATCAGTTGTTAG

Protein sequence

MDSPILLQFSSLLFQMLMEEDLQRKAQDVSLAGFFNKETDYFFRYRLGACASSKEKGVSCSLPRKEPITKKTKEEHIISSVRVKRISC

Homology

The following BLAST results are available for this feature:

BLAST of Lcy12g017520.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g017520.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g017520.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g017520.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy12g017520	Lcy12g017520	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g017520.1.utr5p1	Lcy12g017520.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g017520.1.exon1	Lcy12g017520.1.exon1	exon
Lcy12g017520.1.exon2	Lcy12g017520.1.exon2	exon
Lcy12g017520.1.exon3	Lcy12g017520.1.exon3	exon
Lcy12g017520.1.exon4	Lcy12g017520.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g017520.1.cds1	Lcy12g017520.1.cds1	CDS
Lcy12g017520.1.cds2	Lcy12g017520.1.cds2	CDS
Lcy12g017520.1.cds3	Lcy12g017520.1.cds3	CDS
Lcy12g017520.1.cds4	Lcy12g017520.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy12g017520.1	Lcy12g017520.1-protein	polypeptide