Lcy11g003800.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy11g003800.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	conserved peptide upstream open reading frame 37
Location	Chr11: 3736995 .. 3737300 (-)
Sequence length	162
RNA-Seq Expression	Lcy11g003800.1
Synteny	Lcy11g003800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATTGCATGCTTTCAACCTTTGCAGAATTGTCAGGTTTGTCAACTCAGTTTCTGCCTCCTGGTTTTGCTTGTTGTTTAACAATTGAATTAGTTTTACATTTATTTTATTTAATCCCTCTTTATTTTCCCCTCCTGAAGTTGGCTGGTCATGAAACTTTTGGTATTTTTTCTGTTTCAGGCTGAGTATTTTCGACATTTGCTTAAGCCTGTCACGTAG

mRNA sequence

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATTGCATGCTTTCAACCTTTGCAGAATTGTCAGGCTGAGTATTTTCGACATTTGCTTAAGCCTGTCACGTAG

Coding sequence (CDS)

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATTGCATGCTTTCAACCTTTGCAGAATTGTCAGGCTGAGTATTTTCGACATTTGCTTAAGCCTGTCACGTAG

Protein sequence

MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT

Homology

[Close]

BLAST of Lcy11g003800.1 vs. ExPASy TrEMBL
Match: A0A0A0K458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. ExPASy TrEMBL
Match: A0A1S4E0J3 (uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. ExPASy TrEMBL
Match: W9R7U4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. ExPASy TrEMBL
Match: A0A2P5AUS4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298860 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAG+PTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. ExPASy TrEMBL
Match: A0A0A0KVT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQA+YFR LLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. NCBI nr
Match: KAG7030896.1 (hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 5.2e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
           MVCQAATQTRFR LKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 139

[Close]

BLAST of Lcy11g003800.1 vs. NCBI nr
Match: XP_016901746.1 (PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. NCBI nr
Match: KAE8645821.1 (hypothetical protein Csa_023855, partial [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 59

[Close]

BLAST of Lcy11g003800.1 vs. NCBI nr
Match: KAG7014898.1 (hypothetical protein SDJN02_22529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFR LLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. NCBI nr
Match: EXB57311.1 (hypothetical protein L484_011398 [Morus notabilis])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Lcy11g003800.1 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQ+A QTRFR LKHE+GI G   I+VRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Lcy11g003800.1 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 )

HSP 1 Score: 86.3 bits (212), Expect = 8.2e-18
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHE-NGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MV Q+A QTRFR  K+E NG + +PTI+VRVIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Lcy11g003800.1 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQ+  +TRFR LK+E G A + TI+VRVI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

The following BLAST results are available for this feature:

BLAST of Lcy11g003800.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g003800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K458	5.6e-22	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]
A0A1S4E0J3	5.6e-22	96.23	uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
W9R7U4	9.5e-22	96.23	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1	[more]
A0A2P5AUS4	2.1e-21	94.34	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298860 PE...	[more]
A0A0A0KVT2	2.1e-21	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1	[more]

BLAST of Lcy11g003800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030896.1	5.2e-22	98.11	hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_016901746.1	1.2e-21	96.23	PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo]	[more]
KAE8645821.1	1.2e-21	96.23	hypothetical protein Csa_023855, partial [Cucumis sativus]	[more]
KAG7014898.1	1.5e-21	98.11	hypothetical protein SDJN02_22529 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
EXB57311.1	2.0e-21	96.23	hypothetical protein L484_011398 [Morus notabilis]	[more]

BLAST of Lcy11g003800.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50011.1	1.3e-18	79.25	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	8.2e-18	72.22	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	2.0e-16	67.92	conserved peptide upstream open reading frame 40	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281	BNAA02G34170D PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR35281:SF4	SUBFAMILY NOT NAMED	coord: 1..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy11g003800	Lcy11g003800	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy11g003800.1.exon2	Lcy11g003800.1.exon2	exon
Lcy11g003800.1.exon1	Lcy11g003800.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy11g003800.1.cds2	Lcy11g003800.1.cds2	CDS
Lcy11g003800.1.cds1	Lcy11g003800.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy11g003800.1	Lcy11g003800.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity