Lcy09g010440.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy09g010440.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSASA domain-containing protein
LocationChr09: 11035114 .. 11035296 (-)
Sequence length183
RNA-Seq ExpressionLcy09g010440.1
SyntenyLcy09g010440.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATACATCCCATCTGAGTCTCAATCCAACACCTCAATCCTTCAATTCAAGGTTGAATTCAAATGGGAATTAGCCCATGAACCACTTCATTGGGACATTGACCACAACAAGACCAATGACGTTTGCCCTGGTATGGCTTTTGCCAATGAGCTTTTGGTCAAAGCTTGGCAAGAGCATTAG

mRNA sequence

ATGGGATACATCCCATCTGAGTCTCAATCCAACACCTCAATCCTTCAATTCAAGGTTGAATTCAAATGGGAATTAGCCCATGAACCACTTCATTGGGACATTGACCACAACAAGACCAATGACGTTTGCCCTGGTATGGCTTTTGCCAATGAGCTTTTGGTCAAAGCTTGGCAAGAGCATTAG

Coding sequence (CDS)

ATGGGATACATCCCATCTGAGTCTCAATCCAACACCTCAATCCTTCAATTCAAGGTTGAATTCAAATGGGAATTAGCCCATGAACCACTTCATTGGGACATTGACCACAACAAGACCAATGACGTTTGCCCTGGTATGGCTTTTGCCAATGAGCTTTTGGTCAAAGCTTGGCAAGAGCATTAG

Protein sequence

MGYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKAWQEH
Homology
BLAST of Lcy09g010440.1 vs. ExPASy Swiss-Prot
Match: Q8L9J9 (Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana OX=3702 GN=At4g34215 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 4   IPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFAN 51
           +P E   N+SIL+   + +WE AHEPLH DID  K   V PGMAFAN
Sbjct: 54  LPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFAN 100

BLAST of Lcy09g010440.1 vs. ExPASy TrEMBL
Match: A0A6J1BYJ2 (probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC111006630 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 2   GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKA 57
           GYIP ESQS TSI++F    +WELAHEPLHWDID  KTN V PGMAFANELL KA
Sbjct: 57  GYIPVESQSETSIIRFTAGRQWELAHEPLHWDIDRKKTNGVGPGMAFANELLAKA 111

BLAST of Lcy09g010440.1 vs. ExPASy TrEMBL
Match: A0A6J1CJZ1 (probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC111011984 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVK 56
          GYIP ESQSN SIL+   + +WE A EPLHWDID++KTN + PGMAFANEL V+
Sbjct: 44 GYIPPESQSNESILRLTADLRWEQASEPLHWDIDYHKTNGIGPGMAFANELSVQ 97

BLAST of Lcy09g010440.1 vs. ExPASy TrEMBL
Match: A0A6J1K1G7 (probable carbohydrate esterase At4g34215 OS=Cucurbita maxima OX=3661 GN=LOC111489769 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKA 57
          GYIP ESQ N SI +F  +  WE A EPLHWDID  KTN V PGM FANELL KA
Sbjct: 37 GYIPPESQPNQSIFRFTADMVWEQAREPLHWDIDVVKTNGVGPGMPFANELLAKA 91

BLAST of Lcy09g010440.1 vs. ExPASy TrEMBL
Match: A0A6J1FFF9 (probable carbohydrate esterase At4g34215 OS=Cucurbita moschata OX=3662 GN=LOC111445241 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKA 57
          GYIP ESQ N SI +F  +  WE A EPLHWDID  KTN V PGM FANELL KA
Sbjct: 37 GYIPPESQPNQSIFRFTADMVWEQAREPLHWDIDVVKTNGVGPGMPFANELLAKA 91

BLAST of Lcy09g010440.1 vs. ExPASy TrEMBL
Match: A0A0A0K9J9 (SASA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G058180 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELL 54
          GYIP E +SN SI +   +  WE AHEPLHWDID  KTN + PGMAFANELL
Sbjct: 45 GYIPLECESNDSIFRLNADMVWEQAHEPLHWDIDVVKTNGIGPGMAFANELL 96

BLAST of Lcy09g010440.1 vs. NCBI nr
Match: XP_022134349.1 (probable carbohydrate esterase At4g34215 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 2   GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKA 57
           GYIP ESQS TSI++F    +WELAHEPLHWDID  KTN V PGMAFANELL KA
Sbjct: 57  GYIPVESQSETSIIRFTAGRQWELAHEPLHWDIDRKKTNGVGPGMAFANELLAKA 111

BLAST of Lcy09g010440.1 vs. NCBI nr
Match: XP_022141681.1 (probable carbohydrate esterase At4g34215 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-13
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVK 56
          GYIP ESQSN SIL+   + +WE A EPLHWDID++KTN + PGMAFANEL V+
Sbjct: 44 GYIPPESQSNESILRLTADLRWEQASEPLHWDIDYHKTNGIGPGMAFANELSVQ 97

BLAST of Lcy09g010440.1 vs. NCBI nr
Match: XP_023550941.1 (probable carbohydrate esterase At4g34215 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 5.0e-13
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKA 57
          GYIP ESQ N SI +F  +  WE AHEPLHWDID  KTN V PGM FANELL KA
Sbjct: 37 GYIPPESQPNQSIFRFTADMVWEQAHEPLHWDIDVVKTNGVGPGMPFANELLAKA 91

BLAST of Lcy09g010440.1 vs. NCBI nr
Match: KAG7016422.1 (putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKA 57
          GYIP ESQ N SI +F  +  WE A EPLHWDID  KTN V PGM FANELL KA
Sbjct: 37 GYIPPESQPNQSIFRFTADMVWEQAREPLHWDIDVVKTNGVGPGMPFANELLAKA 91

BLAST of Lcy09g010440.1 vs. NCBI nr
Match: XP_022993914.1 (probable carbohydrate esterase At4g34215 [Cucurbita maxima])

HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 2  GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELLVKA 57
          GYIP ESQ N SI +F  +  WE A EPLHWDID  KTN V PGM FANELL KA
Sbjct: 37 GYIPPESQPNQSIFRFTADMVWEQAREPLHWDIDVVKTNGVGPGMPFANELLAKA 91

BLAST of Lcy09g010440.1 vs. TAIR 10
Match: AT3G53010.1 (Domain of unknown function (DUF303) )

HSP 1 Score: 63.2 bits (152), Expect = 8.4e-11
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 2   GYIPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFANELL 54
           G IP E +SN SIL+   + +W+ A EPLH DID NKTN V PGM FAN ++
Sbjct: 59  GVIPPECRSNPSILRLTSKLEWKEAKEPLHVDIDINKTNGVGPGMPFANRVV 110

BLAST of Lcy09g010440.1 vs. TAIR 10
Match: AT4G34215.1 (Domain of unknown function (DUF303) )

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-09
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 4   IPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFAN 51
           +P E   N+SIL+   + +WE AHEPLH DID  K   V PGMAFAN
Sbjct: 54  LPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFAN 100

BLAST of Lcy09g010440.1 vs. TAIR 10
Match: AT4G34215.2 (Domain of unknown function (DUF303) )

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-09
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 4   IPSESQSNTSILQFKVEFKWELAHEPLHWDIDHNKTNDVCPGMAFAN 51
           +P E   N+SIL+   + +WE AHEPLH DID  K   V PGMAFAN
Sbjct: 54  LPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFAN 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8L9J92.2e-0855.32Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana OX=3702 GN=At4g... [more]
Match NameE-valueIdentityDescription
A0A6J1BYJ21.5e-1574.55probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1CJZ11.8e-1366.67probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1K1G72.0e-1267.27probable carbohydrate esterase At4g34215 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FFF92.0e-1267.27probable carbohydrate esterase At4g34215 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0K9J91.3e-1165.38SASA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G058180 PE=4 S... [more]
Match NameE-valueIdentityDescription
XP_022134349.13.1e-1574.55probable carbohydrate esterase At4g34215 [Momordica charantia][more]
XP_022141681.13.8e-1366.67probable carbohydrate esterase At4g34215 [Momordica charantia][more]
XP_023550941.15.0e-1369.09probable carbohydrate esterase At4g34215 [Cucurbita pepo subsp. pepo][more]
KAG7016422.14.2e-1267.27putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_022993914.14.2e-1267.27probable carbohydrate esterase At4g34215 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G53010.18.4e-1155.77Domain of unknown function (DUF303) [more]
AT4G34215.11.6e-0955.32Domain of unknown function (DUF303) [more]
AT4G34215.21.6e-0955.32Domain of unknown function (DUF303) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036514SGNH hydrolase superfamilyGENE3D3.40.50.1110SGNH hydrolasecoord: 1..59
e-value: 8.5E-6
score: 27.8
IPR005181Sialate O-acetylesterase domainPFAMPF03629SASAcoord: 2..54
e-value: 3.2E-12
score: 46.6
NoneNo IPR availablePANTHERPTHR31988ESTERASE, PUTATIVE (DUF303)-RELATEDcoord: 2..55
NoneNo IPR availablePANTHERPTHR31988:SF13OS06G0729725 PROTEINcoord: 2..55

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy09g010440Lcy09g010440gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy09g010440.1.exon1Lcy09g010440.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy09g010440.1.cds1Lcy09g010440.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy09g010440.1Lcy09g010440.1-proteinpolypeptide