Lcy09g010100.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy09g010100.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	light-harvesting complex-like protein OHP2, chloroplastic
Location	Chr09: 10657868 .. 10659975 (+)
Sequence length	1061
RNA-Seq Expression	Lcy09g010100.1
Synteny	Lcy09g010100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAACTTGGCCTCATCGTATCCACACCAAACATATCCAATCCATTTCTCCCAAAAAACTCACAAGCAATCAATCTTTGACTTCAATTCCCAAATTCTGAATCCATTTCAGTTCCACAACAATCTGAAAGAGAAATTACAGAGAGCGAACGGAAATGTCGGGGGCCTGTTCAATCCCCTTCGCCAAAATCAAAATCCCGGCCACTTCCTCGTCGCCGGCCGCCGCTTCTCCGTCGGCGTCGGCCGCTGCTTCCGCATCTTCATCGTCGGCTCACAGTTCCATCAGATTCTCTCCCTCCAAGCCTTTCGTCTTCACCATTCGGAGCTCTCAGACCGAAGGCCCTCTCCGGAGACCGGCGGTTCCTTCTCTGAGAGAGCCTTCGCCGCCTTCTCCGTCGCCTCCTTCGCCTCCTCTCAAGCCGACTCCTCCGTCGCAGTCGCCTCCGTCGGCGGCGGCTCCTGTTGCTCAGCCGTCGGCGCAGGCGTATGCTGCGAAACAGGATAATGTGATCACGTTGGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGAAGGTCGATTTCATTTACCCTTTTCTTCTTCGATTTTGTCGATGATTACTAAACTTTGGAGCTGGATAATCTCACTTGTGATTACTGTTTGTGTTGCGCAATTCGTGGCTGTTATATTATTCTTCTGCTATTAGATTATCAATAGGTCTTGTCTTGCCAGCAATTGACTGCGATTGGACTAACTCTATTGTTGCATTTGGATTGGCCCTTCTTTAAGTTTTCTTTAGAGGAAAATTCCTTTGTTTCCGGAAATTCAATTATACGTATGGGTTGCTGTTACTCGTGAAGAAAATGAACTTCTCGATTGAGATGATTCTGTAGCGAGAGATTATTTGCCAAAATTTTCTATGTTTTCTATGCTCATGTTTAAACAACCATTTAAATTATTCAAAGAGGCCGTCTCAATGAGTGTGATACTTTTGTCCTCAATTTTGTATCCAACAATTAATAGAAGCAGATAAATTTTAAGATCTACATCCAACGGTGATAAAGAGGCAGTCATATCGTGGCGTAAATAATTTGTCCAAAATAAAGGCTTTCTTTTAACTTATTGTAAGTTCCAATGTGGTGCCAACTGCCAAAAGGCTTCAACAACTTAGTCGACAAGTTCACAATTAATTTTGCTTCTAGCTGCAAGTTATTTTATTATGTTCAATTGCCGAAACTCCATTTTTCTTTAGCACGAAGTAGAACTACATGAATTCTTTCTTTATCTTTATAGATTAGTAGATAACCGATCCTTTTCCAATGTAGTTTGGAGAGTCCTTTGAGAAATCATATCCACTGTGTTTTTTTGCTGCTGTTTCACTGTTTTTTTGCTGATTTTTGTTCAGACTCCAATTTATTGATGTTCTTCGTATGTATATGGAAATGGATTTTATTTGATTTTGACATTGCTCCTGAAAATTTGCATCTGATCGAGTTAAACTGGTCCTTTGTGTACCTTCGTTCCATATTTTACTGAATCTCATAGTTGCTAGTAGAAATCAGCTGTTCAGTTTACTGGTTAAGGTTCTTCACTACTCTTACTGAGTCGTTTTTCACTTACAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTCGATCAAGTAAAGATCCTCCTCTCAAATTTTGGGATAGTAGATCTCGAATGACACAATGTACAAGGTCGATGTCGCTATATTTTTCCAATTGCTGTAATTTCTGTATCTACATCCTGTAATCCATCTGATAGTCTTCTTGAGAGTTTTGTTGTTTGATACACTCAATTGCCATTCAAGTGGGTGCTCCTTGCAATGCTTACTGTTTTTCTGTTATATATAAAGTCTTCCTTTTCTTTGTAGTTCATTGGGAGCATATTAGCTATTCATACAATCATACCTTGCTAAACTTTTGTACCTTCATTTATTGAAGGGCTGATAATCAACCTTGAAAGTATGATAGATTTGTTCTTACTTTTGTTA

mRNA sequence

CTGAAACTTGGCCTCATCGTATCCACACCAAACATATCCAATCCATTTCTCCCAAAAAACTCACAAGCAATCAATCTTTGACTTCAATTCCCAAATTCTGAATCCATTTCAGTTCCACAACAATCTGAAAGAGAAATTACAGAGAGCGAACGGAAATGTCGGGGGCCTGTTCAATCCCCTTCGCCAAAATCAAAATCCCGGCCACTTCCTCGTCGCCGGCCGCCGCTTCTCCGTCGGCGTCGGCCGCTGCTTCCGCATCTTCATCGTCGGCTCACAGTTCCATCAGATTCTCTCCCTCCAAGCCTTTCGTCTTCACCATTCGGAGCTCTCAGACCGAAGGCCCTCTCCGGAGACCGGCGGTTCCTTCTCTGAGAGAGCCTTCGCCGCCTTCTCCGTCGCCTCCTTCGCCTCCTCTCAAGCCGACTCCTCCGTCGCAGTCGCCTCCGTCGGCGGCGGCTCCTGTTGCTCAGCCGTCGGCGCAGGCGTATGCTGCGAAACAGGATAATGTGATCACGTTGGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGAAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTCGATCAAGTAAAGATCCTCCTCTCAAATTTTGGGATAGTAGATCTCGAATGACACAATGTACAAGGTCGATGTCGCTATATTTTTCCAATTGCTGTAATTTCTGTATCTACATCCTGTAATCCATCTGATAGTCTTCTTGAGAGTTTTGTTGTTTGATACACTCAATTGCCATTCAAGTGGGTGCTCCTTGCAATGCTTACTGTTTTTCTGTTATATATAAAGTCTTCCTTTTCTTTGTAGTTCATTGGGAGCATATTAGCTATTCATACAATCATACCTTGCTAAACTTTTGTACCTTCATTTATTGAAGGGCTGATAATCAACCTTGAAAGTATGATAGATTTGTTCTTACTTTTGTTA

Coding sequence (CDS)

ATGTCGGGGGCCTGTTCAATCCCCTTCGCCAAAATCAAAATCCCGGCCACTTCCTCGTCGCCGGCCGCCGCTTCTCCGTCGGCGTCGGCCGCTGCTTCCGCATCTTCATCGTCGGCTCACAGTTCCATCAGATTCTCTCCCTCCAAGCCTTTCGTCTTCACCATTCGGAGCTCTCAGACCGAAGGCCCTCTCCGGAGACCGGCGGTTCCTTCTCTGAGAGAGCCTTCGCCGCCTTCTCCGTCGCCTCCTTCGCCTCCTCTCAAGCCGACTCCTCCGTCGCAGTCGCCTCCGTCGGCGGCGGCTCCTGTTGCTCAGCCGTCGGCGCAGGCGTATGCTGCGAAACAGGATAATGTGATCACGTTGGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGAAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTCGATCAAGTAAAGATCCTCCTCTCAAATTTTGGGATAGTAGATCTCGAATGA

Protein sequence

MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQTEGPLRRPAVPSLREPSPPSPSPPSPPLKPTPPSQSPPSAAAPVAQPSAQAYAAKQDNVITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLE

Homology

[Close]

BLAST of Lcy09g010100.1 vs. ExPASy Swiss-Prot
Match: Q9FEC1 (Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP2 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.9e-44
Identity = 116/182 (63.74%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 19  SSPAAASPSASAAASASSSSAHSSIRFS-PSKPFVFTIRSSQTEGPLRRP-AVPSLREPS 78
           +SP       + ++S+SSS+A SS RFS  +KP VF IR SQTEGPLRRP A P+LREP 
Sbjct: 4   ASPIQCIRILNPSSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQ 63

Query: 79  PPSPSPPSPPLKPTPPSQSPPSAAAPVAQPSAQAYAAKQDNVITLEFQRQKAKELQEYFK 138
                      KP PPSQ  PS++ P + P  +A A    +V T+EFQRQKAKELQEYFK
Sbjct: 64  -----------KPVPPSQ--PSSSPPPSPPPQKAVAVDGKSVTTVEFQRQKAKELQEYFK 123

Query: 139 QKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVD 198
           QKKL+ A QGPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+D
Sbjct: 124 QKKLEAAGQGPFFGFQPKNEISNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILD 172

[Close]

BLAST of Lcy09g010100.1 vs. ExPASy TrEMBL
Match: A0A6J1FIC8 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445596 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.2e-78
Identity = 176/199 (88.44%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACSIPFAKIKIPATSSSPA ASPSASA +SASSSSAHSSIRFS +KPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSTKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPT-PPSQSPPSAAAPVAQPSAQAYAAKQDNVI 120
           EGPLRRPA PSLREPSPPSP  P+PPLKPT PPSQ+PPS           AYAAK DNVI
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPPSQTPPS----------PAYAAKLDNVI 120

Query: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180
           TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS
Sbjct: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180

Query: 181 NFVDQVKILLSNFGIVDLE 199
           NFVDQVKILLSNFGIVDLE
Sbjct: 181 NFVDQVKILLSNFGIVDLE 189

[Close]

BLAST of Lcy09g010100.1 vs. ExPASy TrEMBL
Match: A0A6J1K1U3 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489352 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.7e-77
Identity = 175/199 (87.94%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACSIPFAKIKIPA SSSPA ASPSASA +SASSSSAHSSIRFS SKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPAASSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPTPP-SQSPPSAAAPVAQPSAQAYAAKQDNVI 120
           EGPLRRPA PSLREPSPPSP  P+PPLKPTPP SQ+PPS           AYAAK DNVI
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSSQTPPS----------PAYAAKLDNVI 120

Query: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180
           TLEFQRQKAKELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS
Sbjct: 121 TLEFQRQKAKELQEYFKQKKLDEDDQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180

Query: 181 NFVDQVKILLSNFGIVDLE 199
           NFVDQVKILLSNFGIVDLE
Sbjct: 181 NFVDQVKILLSNFGIVDLE 189

[Close]

BLAST of Lcy09g010100.1 vs. ExPASy TrEMBL
Match: A0A6J1HG91 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464005 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.0e-76
Identity = 172/198 (86.87%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS AA SPSASAA+S SSSSAHSSIRFS SKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPTPPSQSPPSAAAPVAQPSAQAYAAKQDNVIT 120
           +GP+RRPA PSLREPSPPS   P PPLKP PPS    SA APVAQPS +AY AKQDN IT
Sbjct: 61  DGPIRRPAAPSLREPSPPS---PPPPLKP-PPS----SATAPVAQPSGKAYVAKQDNTIT 120

Query: 121 LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180
           LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN
Sbjct: 121 LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180

Query: 181 FVDQVKILLSNFGIVDLE 199
           FVDQVKILLSNFGIVDL+
Sbjct: 181 FVDQVKILLSNFGIVDLD 190

[Close]

BLAST of Lcy09g010100.1 vs. ExPASy TrEMBL
Match: A0A6J1JS47 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487322 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 169/198 (85.35%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS AA SPSASA +S SSSSAHSSIRFS SKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPTPPSQSPPSAAAPVAQPSAQAYAAKQDNVIT 120
           +GP+RRPA PSLREPSPPS   P PPLKPT     P SA AP +QPSA+AY AKQDN IT
Sbjct: 61  DGPIRRPAAPSLREPSPPS---PPPPLKPT-----PTSATAPFSQPSAKAYVAKQDNTIT 120

Query: 121 LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180
           LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN
Sbjct: 121 LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180

Query: 181 FVDQVKILLSNFGIVDLE 199
           FVDQVKILLSNFGIVDL+
Sbjct: 181 FVDQVKILLSNFGIVDLD 190

[Close]

BLAST of Lcy09g010100.1 vs. ExPASy TrEMBL
Match: A0A1S3B3J8 (proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC103485601 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.3e-71
Identity = 167/203 (82.27%), Postives = 178/203 (87.68%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPA----AASPSASAAASASSSSA-HSSIRFSPSKPFVFTI 60
           MSGACSIPFA IKIP+TSSSPA    AASPSASA++SASSSS+ HSS+RF  SKPF+FTI
Sbjct: 1   MSGACSIPFANIKIPSTSSSPAATASAASPSASASSSASSSSSLHSSLRFHSSKPFLFTI 60

Query: 61  RSSQTEGPLRRPAVPSLREPSPPSPSPPSPPLKPTPPSQSPPSAAAPVAQPSAQAYAAKQ 120
           RSSQTEGPLRRP+ PSLR+PSPPSP  P+PPLKP+PPSQSPPS   PV          KQ
Sbjct: 61  RSSQTEGPLRRPSAPSLRDPSPPSPPSPTPPLKPSPPSQSPPS---PV---------LKQ 120

Query: 121 DNVITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEY 180
           DNVITLEFQR KAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEY
Sbjct: 121 DNVITLEFQRLKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEY 180

Query: 181 ATGSNFVDQVKILLSNFGIVDLE 199
           ATGSNFVDQVKILLSNFGI+DLE
Sbjct: 181 ATGSNFVDQVKILLSNFGIIDLE 191

[Close]

BLAST of Lcy09g010100.1 vs. NCBI nr
Match: XP_023551626.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.4 bits (773), Expect = 2.9e-78
Identity = 177/199 (88.94%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACSIPFAKIKIPATSSSPA ASPSASA +SASSSSAHSSIRFS SKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPT-PPSQSPPSAAAPVAQPSAQAYAAKQDNVI 120
           EGPLRRPA PSLREPSPPSP  P+PPLKPT PPSQ+PPS           AYAAK DNVI
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPPSQTPPS----------PAYAAKLDNVI 120

Query: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180
           TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS
Sbjct: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180

Query: 181 NFVDQVKILLSNFGIVDLE 199
           NFVDQVKILLSNFGIVDLE
Sbjct: 181 NFVDQVKILLSNFGIVDLE 189

[Close]

BLAST of Lcy09g010100.1 vs. NCBI nr
Match: XP_022939849.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 301.2 bits (770), Expect = 6.5e-78
Identity = 176/199 (88.44%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACSIPFAKIKIPATSSSPA ASPSASA +SASSSSAHSSIRFS +KPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSTKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPT-PPSQSPPSAAAPVAQPSAQAYAAKQDNVI 120
           EGPLRRPA PSLREPSPPSP  P+PPLKPT PPSQ+PPS           AYAAK DNVI
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPPSQTPPS----------PAYAAKLDNVI 120

Query: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180
           TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS
Sbjct: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180

Query: 181 NFVDQVKILLSNFGIVDLE 199
           NFVDQVKILLSNFGIVDLE
Sbjct: 181 NFVDQVKILLSNFGIVDLE 189

[Close]

BLAST of Lcy09g010100.1 vs. NCBI nr
Match: KAG7016405.1 (Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-77
Identity = 176/199 (88.44%), Postives = 179/199 (89.95%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACSIPFAKIKIPATSSSPA ASPSASA +SASSSSAHSSIRFS SKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASANSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPT-PPSQSPPSAAAPVAQPSAQAYAAKQDNVI 120
           EGPLRRPA PSLREPSPPSP  P+PPLKP  PPSQ+PPS           AYAAK DNVI
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPNPPPSQTPPS----------PAYAAKLDNVI 120

Query: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180
           TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS
Sbjct: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180

Query: 181 NFVDQVKILLSNFGIVDLE 199
           NFVDQVKILLSNFGIVDLE
Sbjct: 181 NFVDQVKILLSNFGIVDLE 189

[Close]

BLAST of Lcy09g010100.1 vs. NCBI nr
Match: XP_022993308.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 298.1 bits (762), Expect = 5.5e-77
Identity = 175/199 (87.94%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAASPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQT 60
           MSGACSIPFAKIKIPA SSSPA ASPSASA +SASSSSAHSSIRFS SKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPAASSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  EGPLRRPAVPSLREPSPPSPSPPSPPLKPTPP-SQSPPSAAAPVAQPSAQAYAAKQDNVI 120
           EGPLRRPA PSLREPSPPSP  P+PPLKPTPP SQ+PPS           AYAAK DNVI
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSSQTPPS----------PAYAAKLDNVI 120

Query: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180
           TLEFQRQKAKELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS
Sbjct: 121 TLEFQRQKAKELQEYFKQKKLDEDDQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180

Query: 181 NFVDQVKILLSNFGIVDLE 199
           NFVDQVKILLSNFGIVDLE
Sbjct: 181 NFVDQVKILLSNFGIVDLE 189

[Close]

BLAST of Lcy09g010100.1 vs. NCBI nr
Match: XP_038884716.1 (light-harvesting complex-like protein OHP2, chloroplastic [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-76
Identity = 173/199 (86.93%), Postives = 179/199 (89.95%), Query Frame = 0


Query: 1   MSGACSIPFAKIKIPATSSSPAAA-SPSASAAASASSSSAHSSIRFSPSKPFVFTIRSSQ 60
           MSGACSIPFAKIKIP  SSSPAAA SPSASA++SASSSS H+S+RFS SKPFVFTIRSSQ
Sbjct: 1   MSGACSIPFAKIKIPPPSSSPAAAVSPSASASSSASSSSPHTSLRFSSSKPFVFTIRSSQ 60

Query: 61  TEGPLRRPAVPSLREPSPPSPSPPSPPLKPTPPSQSPPSAAAPVAQPSAQAYAAKQDNVI 120
           TEGPLRRPA PSLREPSPPSPS P+PPLKPTPP QSPPS  +PV          KQDNVI
Sbjct: 61  TEGPLRRPAAPSLREPSPPSPSSPTPPLKPTPPPQSPPSPVSPV---------VKQDNVI 120

Query: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180
           TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS
Sbjct: 121 TLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGS 180

Query: 181 NFVDQVKILLSNFGIVDLE 199
           NFVDQVKILLSNFGIVDLE
Sbjct: 181 NFVDQVKILLSNFGIVDLE 190

[Close]

BLAST of Lcy09g010100.1 vs. TAIR 10
Match: AT1G34000.1 (one-helix protein 2 )

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-45
Identity = 116/182 (63.74%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 19  SSPAAASPSASAAASASSSSAHSSIRFS-PSKPFVFTIRSSQTEGPLRRP-AVPSLREPS 78
           +SP       + ++S+SSS+A SS RFS  +KP VF IR SQTEGPLRRP A P+LREP 
Sbjct: 4   ASPIQCIRILNPSSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQ 63

Query: 79  PPSPSPPSPPLKPTPPSQSPPSAAAPVAQPSAQAYAAKQDNVITLEFQRQKAKELQEYFK 138
                      KP PPSQ  PS++ P + P  +A A    +V T+EFQRQKAKELQEYFK
Sbjct: 64  -----------KPVPPSQ--PSSSPPPSPPPQKAVAVDGKSVTTVEFQRQKAKELQEYFK 123

Query: 139 QKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVD 198
           QKKL+ A QGPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+D
Sbjct: 124 QKKLEAAGQGPFFGFQPKNEISNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILD 172

The following BLAST results are available for this feature:

BLAST of Lcy09g010100.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FEC1	4.9e-44	63.74	Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Lcy09g010100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIC8	3.2e-78	88.44	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1K1U3	2.7e-77	87.94	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1HG91	5.0e-76	86.87	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1JS47	1.1e-75	85.35	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A1S3B3J8	1.3e-71	82.27	proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Lcy09g010100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551626.1	2.9e-78	88.94	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp....	[more]
XP_022939849.1	6.5e-78	88.44	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata]	[more]
KAG7016405.1	1.9e-77	88.44	Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperm...	[more]
XP_022993308.1	5.5e-77	87.94	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima]	[more]
XP_038884716.1	1.2e-76	86.93	light-harvesting complex-like protein OHP2, chloroplastic [Benincasa hispida]	[more]

BLAST of Lcy09g010100.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34000.1	3.5e-45	63.74	one-helix protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 95..191 e-value: 2.7E-5 score: 26.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..105
None	No IPR available	PANTHER	PTHR14154:SF83	MYB-LIKE PROTEIN U	coord: 1..197
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..197
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 144..187

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy09g010100	Lcy09g010100	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g010100.1.utr5p1	Lcy09g010100.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g010100.1.exon1	Lcy09g010100.1.exon1	exon
Lcy09g010100.1.exon2	Lcy09g010100.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g010100.1.cds1	Lcy09g010100.1.cds1	CDS
Lcy09g010100.1.cds2	Lcy09g010100.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g010100.1.utr3p1	Lcy09g010100.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy09g010100.1	Lcy09g010100.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006850	mitochondrial pyruvate transmembrane transport
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0050833	pyruvate transmembrane transporter activity