Lcy08g018460.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy08g018460.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Phosphotransferase
Location	Chr08: 49190729 .. 49191866 (-)
Sequence length	538
RNA-Seq Expression	Lcy08g018460.1
Synteny	Lcy08g018460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTGATCCACTGGGCTTCCTTGGAAATGGAACGGAAAGTTTCGAAGCCGCGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGGAAAATCGATCATACGCCGTCGCGCCGGTAATTCTTGCCTCTCCTTTACGGCCACCGTCGTCGTGTTAATGGATGATATCTTCTTTGTTTGCTTCAGTTTATTTTTGGTTGCTGTGAGTTGTTGATGACGAAGCACCATGGATGTGAGGGTTTAAAATTTTGAAGGTTGAGATTACGACATAGATTTTAGTTACTGCTGGTGGTTTGATAGGAAATTTCGGGAACTGGATTGGATTTTAAGATGTTTCAATTGTTGAGGTTTCCAAGCTTTGTTCCTGTTAGATTGAGAAATTGAATTTGTGTTTGATTTGGAGGATCGAACGAATTTATCGATTAAGAGATTGTAATTGTATGTGATTTTGATGTTTTCTTTTTGGATGATAATCTCAAATTCTGGATTGGATAAGGATCGTACATTCGCAATTGATGTTTTCGACGATGAATTAAAAGATCGTAAGAACAGCGGAATTTTGTATTCACTGCTTTAATAACTCTGAGTTGAGTTCATTTGTAAAACCTCTCTATTGCAGAACTTTATCGTCAGCCGCCGTAGAGAGAGGAGTTTCAACATCAACTAAAGGCTCGACTGTGAGAATTTTTGTTTCTTTGGTTTTGTTTTCATAGTAAACTACAATGGTTATTTATCAAAGATTAGATTGCTTATGATGACTTTGAATTTGCACAGTTTCCTGTTGCTAGTGGAAGTGAATTCAGGATTCAACAGGCTAAGAGTTTTGCTGTGGCACAGGCCAAACAAGATGGTTGCACTGGTAATTTCAAGATCCTTGATTCCCCATTTGGAAATTTTCTTTTGCCTGTTATTCCTTCTCCCTCTGAATTCGTAGAATAGTTGTTTCGAATCTGATACTGGTTCTACCAGATTTTTATAACTGATATGATTCTGTGAGTGTTGAACTTTTTTGTATGATTGAGATATGATCACTGTAGGAAATTTGAGTTCTAAAACTTCTCCTATGAAAATGCTCTCTCTGTTAATATAAGATTTTCCTGAGTGATTGGACATGGCACTTTGATTACAAA

mRNA sequence

CCCTGATCCACTGGGCTTCCTTGGAAATGGAACGGAAAGTTTCGAAGCCGCGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGGAAAATCGATCATACGCCGTCGCGCCGAACTTTATCGTCAGCCGCCGTAGAGAGAGGAGTTTCAACATCAACTAAAGGCTCGACTTTTCCTGTTGCTAGTGGAAGTGAATTCAGGATTCAACAGGCTAAGAGTTTTGCTGTGGCACAGGCCAAACAAGATGGTTGCACTGGTAATTTCAAGATCCTTGATTCCCCATTTGGAAATTTTCTTTTGCCTGTTATTCCTTCTCCCTCTGAATTCGTAGAATAGTTGTTTCGAATCTGATACTGGTTCTACCAGATTTTTATAACTGATATGATTCTGTGAGTGTTGAACTTTTTTGTATGATTGAGATATGATCACTGTAGGAAATTTGAGTTCTAAAACTTCTCCTATGAAAATGCTCTCTCTGTTAATATAAGATTTTCCTGAGTGATTGGACATGGCACTTTGATTACAAA

Coding sequence (CDS)

ATGGAACGGAAAGTTTCGAAGCCGCGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGGAAAATCGATCATACGCCGTCGCGCCGAACTTTATCGTCAGCCGCCGTAGAGAGAGGAGTTTCAACATCAACTAAAGGCTCGACTTTTCCTGTTGCTAGTGGAAGTGAATTCAGGATTCAACAGGCTAAGAGTTTTGCTGTGGCACAGGCCAAACAAGATGGTTGCACTGGTAATTTCAAGATCCTTGATTCCCCATTTGGAAATTTTCTTTTGCCTGTTATTCCTTCTCCCTCTGAATTCGTAGAATAG

Protein sequence

MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVERGVSTSTKGSTFPVASGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE

Homology

[Close]

BLAST of Lcy08g018460.1 vs. ExPASy TrEMBL
Match: A0A6J1DMU3 (uncharacterized protein LOC111021873 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021873 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.8e-43
Identity = 98/107 (91.59%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
           MERKVSKP NDREIMAPSSQ KRRK D TPSRRTLSSAAVER  VS STKGSTFPVA+GS
Sbjct: 1   MERKVSKPGNDREIMAPSSQSKRRKTDQTPSRRTLSSAAVERERVSASTKGSTFPVATGS 60

Query: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE 107
           EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSP+EFVE
Sbjct: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPAEFVE 107

[Close]

BLAST of Lcy08g018460.1 vs. ExPASy TrEMBL
Match: A0A5D3CHN8 (Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00610 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.4e-40
Identity = 92/107 (85.98%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
           MERKVS PRNDREIMAPSSQIKRRKIDH PSRR+LSSAA+ER GVS STKGSTFPVASGS
Sbjct: 1   MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHGVSASTKGSTFPVASGS 60

Query: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE 107
           EFRI Q KS A+A+AKQDGCTGNFK+LDSPFGNFLLPVIPS +EF E
Sbjct: 61  EFRILQDKSSAIAEAKQDGCTGNFKVLDSPFGNFLLPVIPSSTEFSE 107

[Close]

BLAST of Lcy08g018460.1 vs. ExPASy TrEMBL
Match: A0A5A7V2P5 (Phosphotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00850 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.7e-28
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
          MERKVS PRNDREIMAPSSQIKRRKIDH PSRR+LSSAA+ER  VS STKGSTFPVASGS
Sbjct: 1  MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHRVSASTKGSTFPVASGS 60

Query: 61 EFRIQQAKSFAVAQAKQDGCTGNFKI 86
          EFRI Q KS A+A+AKQDGCTGNFK+
Sbjct: 61 EFRILQDKSSAIAEAKQDGCTGNFKM 86

[Close]

BLAST of Lcy08g018460.1 vs. ExPASy TrEMBL
Match: A0A1S3C8X8 (Phosphotransferase OS=Cucumis melo OX=3656 GN=LOC103498127 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.7e-28
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
          MERKVS PRNDREIMAPSSQIKRRKIDH PSRR+LSSAA+ER  VS STKGSTFPVASGS
Sbjct: 1  MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHRVSASTKGSTFPVASGS 60

Query: 61 EFRIQQAKSFAVAQAKQDGCTGNFKI 86
          EFRI Q KS A+A+AKQDGCTGNFK+
Sbjct: 61 EFRILQDKSSAIAEAKQDGCTGNFKM 86

[Close]

BLAST of Lcy08g018460.1 vs. ExPASy TrEMBL
Match: A0A6J1DKA0 (uncharacterized protein LOC111021873 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021873 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.8e-27
Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
          MERKVSKP NDREIMAPSSQ KRRK D TPSRRTLSSAAVER  VS STKGSTFPVA+GS
Sbjct: 1  MERKVSKPGNDREIMAPSSQSKRRKTDQTPSRRTLSSAAVERERVSASTKGSTFPVATGS 60

Query: 61 EFRIQQAKSFAVAQAKQDGCT 81
          EFRIQQAKSFAVAQAKQDGCT
Sbjct: 61 EFRIQQAKSFAVAQAKQDGCT 81

[Close]

BLAST of Lcy08g018460.1 vs. NCBI nr
Match: XP_022154669.1 (uncharacterized protein LOC111021873 isoform X1 [Momordica charantia])

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-42
Identity = 98/107 (91.59%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
           MERKVSKP NDREIMAPSSQ KRRK D TPSRRTLSSAAVER  VS STKGSTFPVA+GS
Sbjct: 1   MERKVSKPGNDREIMAPSSQSKRRKTDQTPSRRTLSSAAVERERVSASTKGSTFPVATGS 60

Query: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE 107
           EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSP+EFVE
Sbjct: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPAEFVE 107

[Close]

BLAST of Lcy08g018460.1 vs. NCBI nr
Match: TYK10748.1 (hexokinase-1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 4.9e-40
Identity = 92/107 (85.98%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
           MERKVS PRNDREIMAPSSQIKRRKIDH PSRR+LSSAA+ER GVS STKGSTFPVASGS
Sbjct: 1   MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHGVSASTKGSTFPVASGS 60

Query: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE 107
           EFRI Q KS A+A+AKQDGCTGNFK+LDSPFGNFLLPVIPS +EF E
Sbjct: 61  EFRILQDKSSAIAEAKQDGCTGNFKVLDSPFGNFLLPVIPSSTEFSE 107

[Close]

BLAST of Lcy08g018460.1 vs. NCBI nr
Match: KAG7030460.1 (hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-38
Identity = 90/107 (84.11%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
           MER+VSKPRNDREIMAPSSQIKRRKIDHTPSRR LSS  VER G+S STKGS  PV+SGS
Sbjct: 1   MERRVSKPRNDREIMAPSSQIKRRKIDHTPSRRILSSVGVERQGISVSTKGSICPVSSGS 60

Query: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE 107
           EFRI Q KS AVA+AKQD CTGNFKILDSPFGNFLLPVIPSP+E VE
Sbjct: 61  EFRILQDKSSAVAEAKQDCCTGNFKILDSPFGNFLLPVIPSPAELVE 107

[Close]

BLAST of Lcy08g018460.1 vs. NCBI nr
Match: KAG6599484.1 (hypothetical protein SDJN03_09262, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-38
Identity = 90/107 (84.11%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
           MER+VSKPRNDREIMAPSSQIKRRKIDHTPSRR LSS  VER G+S STKGS  PV+SGS
Sbjct: 3   MERRVSKPRNDREIMAPSSQIKRRKIDHTPSRRILSSVGVERQGISVSTKGSICPVSSGS 62

Query: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE 107
           EFRI Q KS AVA+AKQD CTGNFKILDSPFGNFLLPVIPSP+E VE
Sbjct: 63  EFRILQDKSSAVAEAKQDCCTGNFKILDSPFGNFLLPVIPSPAELVE 109

[Close]

BLAST of Lcy08g018460.1 vs. NCBI nr
Match: XP_004141024.1 (uncharacterized protein LOC101218541 isoform X1 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38
Identity = 89/107 (83.18%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MERKVSKPRNDREIMAPSSQIKRRKIDHTPSRRTLSSAAVER-GVSTSTKGSTFPVASGS 60
           MERKV  PRNDREIMAPSSQIKRRKIDH PSRR+ SSAAVER GV  STKGSTFPVASGS
Sbjct: 1   MERKVPMPRNDREIMAPSSQIKRRKIDHPPSRRSSSSAAVERHGVLASTKGSTFPVASGS 60

Query: 61  EFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPSEFVE 107
           EFR+ Q KS A+A+AKQDGCTGNFK+LDSPFGNFLLPVIPS +EF E
Sbjct: 61  EFRMLQDKSSAIAEAKQDGCTGNFKVLDSPFGNFLLPVIPSSTEFFE 107

The following BLAST results are available for this feature:

BLAST of Lcy08g018460.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g018460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMU3	8.8e-43	91.59	uncharacterized protein LOC111021873 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3CHN8	2.4e-40	85.98	Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2P5	4.7e-28	84.88	Phosphotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00...	[more]
A0A1S3C8X8	4.7e-28	84.88	Phosphotransferase OS=Cucumis melo OX=3656 GN=LOC103498127 PE=3 SV=1	[more]
A0A6J1DKA0	8.8e-27	90.12	uncharacterized protein LOC111021873 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy08g018460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154669.1	1.8e-42	91.59	uncharacterized protein LOC111021873 isoform X1 [Momordica charantia]	[more]
TYK10748.1	4.9e-40	85.98	hexokinase-1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAG7030460.1	3.5e-38	84.11	hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599484.1	3.5e-38	84.11	hypothetical protein SDJN03_09262, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004141024.1	4.6e-38	83.18	uncharacterized protein LOC101218541 isoform X1 [Cucumis sativus]	[more]

BLAST of Lcy08g018460.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR48205	FAMILY NOT NAMED	coord: 15..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy08g018460	Lcy08g018460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g018460.1.exon3	Lcy08g018460.1.exon3	exon
Lcy08g018460.1.exon2	Lcy08g018460.1.exon2	exon
Lcy08g018460.1.exon1	Lcy08g018460.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g018460.1.utr3p1	Lcy08g018460.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g018460.1.cds3	Lcy08g018460.1.cds3	CDS
Lcy08g018460.1.cds2	Lcy08g018460.1.cds2	CDS
Lcy08g018460.1.cds1	Lcy08g018460.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g018460.1.utr5p1	Lcy08g018460.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy08g018460.1	Lcy08g018460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0001678	cellular glucose homeostasis
biological_process	GO:0051156	glucose 6-phosphate metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0019318	hexose metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004340	glucokinase activity
molecular_function	GO:0005536	glucose binding