Lcy08g012890.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy08g012890.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA repair protein XRCC3 homolog
Location	Chr08: 42319497 .. 42320644 (+)
Sequence length	1148
RNA-Seq Expression	Lcy08g012890.1
Synteny	Lcy08g012890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGATCGAGGTACATGCCAATTATCGGTGAGTTGTGCTTGTTTGGCAATTAAGCTTGCAATTTAACCAATAATTAGCATTATAATATACATATATACATCATTATCAAATGGAGGGAACCCGAAATTCAAATCCAACTTTGGCGCTCGTTCTTCACCCTTGCTACTTTCGCCATTTTCGGAATCAGAAATGACGCCGGAAAATCTCCTCCATCTCCTCGAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCCTCGACCGCTCCGTCGGCGGCGGCGTCGCCTGCAACTCCCTCACCGAGATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGCCTCCAACTCTCCCTCTGCGCTCAGCTCCCCGTCTCCAGTGGCGGCCTCAGCGCCTCCTCTCTCTACATCCACACCGAGTTCCCTTTCCCCTTTCGTCGCCTTCAACAGCTCTCCCAAGCATTTTCCTCTTCACACCCTCAATTTTCCAATCCCTCCGATCACATCTTTGTCGAGCCTGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTCCTTGCAAATCGAACTTCCCGATTGCCCACCAGGCTCATTGTCATCGATTCGATTGCTGCGTTGTTTCGATCCGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGTTGCTGGCGAAGAGGTATTCTTTGGCTGTGGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTATCTGTGTTCATCGGGACGACGAGTCTGCCCAGCGCTGGGGCTCGCGTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGTGATGAATGGAAGTGAATTAGTGCAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCCCATTTGCCTAAATCATCTTGTGAGTATATAATCAATAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGACCTCTTCTTTTGAACTTATGAATTTTGAGGTTGGAAAGCTAAAGTTTGTATAACCTATGTTTTGATTGTGTAATTATAGAAAT

mRNA sequence

CTTGATCGAGGTACATGCCAATTATCGGTGAGTTGTGCTTGTTTGGCAATTAAGCTTGCAATTTAACCAATAATTAGCATTATAATATACATATATACATCATTATCAAATGGAGGGAACCCGAAATTCAAATCCAACTTTGGCGCTCGTTCTTCACCCTTGCTACTTTCGCCATTTTCGGAATCAGAAATGACGCCGGAAAATCTCCTCCATCTCCTCGAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCCTCGACCGCTCCGTCGGCGGCGGCGTCGCCTGCAACTCCCTCACCGAGATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGCCTCCAACTCTCCCTCTGCGCTCAGCTCCCCGTCTCCAGTGGCGGCCTCAGCGCCTCCTCTCTCTACATCCACACCGAGTTCCCTTTCCCCTTTCGTCGCCTTCAACAGCTCTCCCAAGCATTTTCCTCTTCACACCCTCAATTTTCCAATCCCTCCGATCACATCTTTGTCGAGCCTGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTCCTTGCAAATCGAACTTCCCGATTGCCCACCAGGCTCATTGTCATCGATTCGATTGCTGCGTTGTTTCGATCCGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGTTGCTGGCGAAGAGGTATTCTTTGGCTGTGGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTATCTGTGTTCATCGGGACGACGAGTCTGCCCAGCGCTGGGGCTCGCGTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGTGATGAATGGAAGTGAATTAGTGCAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCCCATTTGCCTAAATCATCTTGTGAGTATATAATCAATAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGACCTCTTCTTTTGAACTTATGAATTTTGAGGTTGGAAAGCTAAAGTTTGTATAACCTATGTTTTGATTGTGTAATTATAGAAAT

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCCATCTCCTCGAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCCTCGACCGCTCCGTCGGCGGCGGCGTCGCCTGCAACTCCCTCACCGAGATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGCCTCCAACTCTCCCTCTGCGCTCAGCTCCCCGTCTCCAGTGGCGGCCTCAGCGCCTCCTCTCTCTACATCCACACCGAGTTCCCTTTCCCCTTTCGTCGCCTTCAACAGCTCTCCCAAGCATTTTCCTCTTCACACCCTCAATTTTCCAATCCCTCCGATCACATCTTTGTCGAGCCTGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTCCTTGCAAATCGAACTTCCCGATTGCCCACCAGGCTCATTGTCATCGATTCGATTGCTGCGTTGTTTCGATCCGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGTTGCTGGCGAAGAGGTATTCTTTGGCTGTGGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTATCTGTGTTCATCGGGACGACGAGTCTGCCCAGCGCTGGGGCTCGCGTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGTGATGAATGGAAGTGAATTAGTGCAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCCCATTTGCCTAAATCATCTTGTGAGTATATAATCAATAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Protein sequence

MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDIMPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVVGEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGVESQ

Homology

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BLAST of Lcy08g012890.1 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.3e-101
Identity = 184/297 (61.95%), Postives = 228/297 (76.77%), Query Frame = 0


Query: 3   PENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPV 62
           PENLL    T +K T GC ILD  + GG++C+SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQF-----SNPSDHIFVEPVHSAHQL 122
           S GGL+ SSLY+H+EFPFPFRRL QLS  F  S+P        NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +R P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+ LRIGNL+YL SSGRRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEEVV----GEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           SR++  +     E   N S  V R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Lcy08g012890.1 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-34
Identity = 104/288 (36.11%), Postives = 148/288 (51.39%), Query Frame = 0


Query: 11  ETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPVSSGGLSAS 70
           E  Q+ + GCP+LD+ +GGG+    +T +   S  GKTQL LQL L  Q P   GGL A 
Sbjct: 77  EQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEAG 136

Query: 71  SLYIHTEFPFPFRRLQQL---SQAFSSSHPQ-------FSNPSDHIFVEPVHSAHQLFDI 130
           ++YI TE  FP +RL QL    +   +  P+       FSN   HIF+E       L + 
Sbjct: 137 AVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSN---HIFIEHAADVDTLLEC 196

Query: 131 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 190
           + K    L    SR   RL+V+DSIAA FR +F    S +  R+ L   +   L+ L+  
Sbjct: 197 VSKKVPIL---LSRGMARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGATLRRLSST 256

Query: 191 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 250
           +   V+  NQV D++     ++       + L +S  R+ PALG+ WAN +  RL + R 
Sbjct: 257 FRSPVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWANQLLMRLMVDRT 316

Query: 251 EEVVGEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGV 289
            E   + V  G   + R   R L V+FAPHLP SSC Y ++ EG+ G+
Sbjct: 317 HE---DDVTTG---LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

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BLAST of Lcy08g012890.1 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.3e-32
Identity = 101/297 (34.01%), Postives = 143/297 (48.15%), Query Frame = 0


Query: 7   LHLL-------ETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQ 66
           LHLL       E  Q+ + GCP+LD  + GG+  + +TE+   S  GKTQL LQL L  Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLF- 126
           LP   GGL A ++Y+ TE  FP RRLQQL    +      ++   H+ +  +   HQ+F 
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQL---IAQQQRLRADVPGHV-ISKIRFGHQIFI 185

Query: 127 DIMPKIESFLANRTSRLP-------TRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKIS 186
           +    +++ L     ++P        RL+VIDS+AA FR +FD   + L  R+     + 
Sbjct: 186 EHAADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPFRCEFDG--AALALRAQRLLALG 245

Query: 187 GKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCV 246
            +L+ L+  +   V+  NQV + +   D            L +    + PALG+ WAN +
Sbjct: 246 AELRRLSCAFRSPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWANQL 305

Query: 247 NSRLFLSRNEEVVGEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGV 289
             RL   R             E       R L VVFAPHLP SSC Y I  EGV G+
Sbjct: 306 LVRLLADRQRP---------EEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVRGM 335

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BLAST of Lcy08g012890.1 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.4e-31
Identity = 102/281 (36.30%), Postives = 134/281 (47.69%), Query Frame = 0


Query: 14  QKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPVSSGGLSASSLY 73
           Q+ + GCP+LD  + GG+  + +TE+   S  GKTQL LQL L  Q P   GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSHP----QFSNPSDHIFVEPVHSAHQLFDIMPKIES 133
           I TE  FP +RLQQL        +  P    Q       IF+E V     L + + K   
Sbjct: 140 ICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVP 199

Query: 134 FLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVV 193
            L    SR   RL+VIDS+AA FR +FD+  S  + R      +   L+ L+  +   V+
Sbjct: 200 VL---LSRGMARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPVL 259

Query: 194 LTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVVGE 253
             NQV + M      +    G L +      RV PALG+ WAN +  RL   R  E    
Sbjct: 260 CINQVTEAMEEQGAAH----GPLGFW---DERVSPALGITWANQLLVRLLADRLRE---- 319

Query: 254 GVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVG 288
                 E       R L V+ APHLP SSC Y I+ EGV G
Sbjct: 320 -----EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]

BLAST of Lcy08g012890.1 vs. ExPASy Swiss-Prot
Match: O15315 (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 9.5e-28
Identity = 89/280 (31.79%), Postives = 141/280 (50.36%), Query Frame = 0


Query: 23  LDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPVSSGGLSASSLYIHTEFPFPF 82
           LD ++ GGVAC SLTEI    GCGKTQ C+ +S+ A LP + GGL  + +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSHPQFSNPSDHIFV--EPVHSAHQLF--DIMPKIESFLANRTSRLPTR 142
            RL ++++   S  P++ N  + + +    VH   +L   +++ +IES      S+   +
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISK-GIK 209

Query: 143 LIVIDSIAALFRSDFD-NTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQV------ 202
           L+++DS+A++ R +FD     +LK R+    + +  LK LA+ +S+ V+LTNQ+      
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 -----VDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVVGE 262
                 DL+  +D L      +L    S    V  ALG  W++ VN+RL L   +     
Sbjct: 270 ALASQADLVSPADDL------SLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDS---- 329

Query: 263 GVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVV 287
                        RR + +  +P  P +S  Y I  EG+V
Sbjct: 330 ------------ERRQILIAKSPLAPFTSFVYTIKEEGLV 343

[Close]

BLAST of Lcy08g012890.1 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 2.7e-150
Identity = 272/294 (92.52%), Postives = 286/294 (97.28%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCPI+DRSVGGGVAC+SLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLSQAFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR S+LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQ-RRTRRWLHVVFAPHLPKSSCEYIINREGVVGVESQ 292
           EEVV  GEG+MNGSELVQ RRTRRWLHVVFAPHLPKSSCEY+INREGVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of Lcy08g012890.1 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 5.0e-149
Identity = 269/293 (91.81%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCP +DRSVGGG+AC+SLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLSQAFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           EEVV  GEG++NGSELVQRR TRRWLHVVFAPHLPKSSCEY+INREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Lcy08g012890.1 vs. ExPASy TrEMBL
Match: A0A1S3BRJ5 (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 5.0e-149
Identity = 269/293 (91.81%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCP +DRSVGGG+AC+SLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLSQAFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           EEVV  GEG++NGSELVQRR TRRWLHVVFAPHLPKSSCEY+INREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Lcy08g012890.1 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 8.6e-149
Identity = 268/293 (91.47%), Postives = 279/293 (95.22%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCPI+DRSVGGGVACNSLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S GGL A+SLYIHTEFPFPFRRLQQLSQAFSSS+PQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANR S LPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSSGRRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGE--GVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGVESQ 292
           EEVVGE  GV+NG EL QRRTRRWLHVVFAPHLPKSSCEY+INR+GVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Lcy08g012890.1 vs. ExPASy TrEMBL
Match: A0A5D3BPT7 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00290 PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.3e-148
Identity = 267/293 (91.13%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCP +DRSVGGG+AC+SLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLS+AFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSEAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           EEVV  GEG++NGSELVQRR TRRWLHVVFAPHLP+SSCEY+INREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPESSCEYVINREGVVGVES 293

[Close]

BLAST of Lcy08g012890.1 vs. NCBI nr
Match: XP_004150781.1 (DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical protein Csa_021163 [Cucumis sativus])

HSP 1 Score: 541.2 bits (1393), Expect = 5.5e-150
Identity = 272/294 (92.52%), Postives = 286/294 (97.28%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCPI+DRSVGGGVAC+SLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLSQAFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR S+LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQ-RRTRRWLHVVFAPHLPKSSCEYIINREGVVGVESQ 292
           EEVV  GEG+MNGSELVQ RRTRRWLHVVFAPHLPKSSCEY+INREGVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of Lcy08g012890.1 vs. NCBI nr
Match: XP_008451720.1 (PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo] >KAA0055575.1 DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 537.0 bits (1382), Expect = 1.0e-148
Identity = 269/293 (91.81%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCP +DRSVGGG+AC+SLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLSQAFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           EEVV  GEG++NGSELVQRR TRRWLHVVFAPHLPKSSCEY+INREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Lcy08g012890.1 vs. NCBI nr
Match: XP_038890688.1 (DNA repair protein XRCC3 homolog [Benincasa hispida])

HSP 1 Score: 537.0 bits (1382), Expect = 1.0e-148
Identity = 267/293 (91.13%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCPI+DRS GGGVAC+SLTEIVAESGCGKTQLCLQLSL AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSAGGGVACSSLTEIVAESGCGKTQLCLQLSLYAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLSQAFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFL N  S+LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLKNSNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSL VVLTNQVVDL+GSSDGLNALRIGNLK+L SSGR+VCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLGVVLTNQVVDLIGSSDGLNALRIGNLKFLSSSGRQVCPALGLAWANCVNTRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGVESQ 292
           EE+V  GEG+MNGSELVQRRTRRWLHVVFAPHLPKSSCEY+INREGVVGVESQ
Sbjct: 241 EEIVGEGEGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 293

[Close]

BLAST of Lcy08g012890.1 vs. NCBI nr
Match: XP_022938282.1 (DNA repair protein XRCC3 homolog [Cucurbita moschata])

HSP 1 Score: 536.2 bits (1380), Expect = 1.8e-148
Identity = 268/293 (91.47%), Postives = 279/293 (95.22%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCPI+DRSVGGGVACNSLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S GGL A+SLYIHTEFPFPFRRLQQLSQAFSSS+PQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANR S LPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSSGRRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGE--GVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGVESQ 292
           EEVVGE  GV+NG EL QRRTRRWLHVVFAPHLPKSSCEY+INR+GVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Lcy08g012890.1 vs. NCBI nr
Match: TYK01347.1 (DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 534.3 bits (1375), Expect = 6.7e-148
Identity = 267/293 (91.13%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLL+TTQKCTFGCP +DRSVGGG+AC+SLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PVSSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDI 120
           P+S+GGL+ASSLYIHTEFPFPFRRLQQLS+AFSSS+PQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSEAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVV--GEGVMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           EEVV  GEG++NGSELVQRR TRRWLHVVFAPHLP+SSCEY+INREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPESSCEYVINREGVVGVES 293

[Close]

BLAST of Lcy08g012890.1 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 370.9 bits (951), Expect = 9.2e-103
Identity = 184/297 (61.95%), Postives = 228/297 (76.77%), Query Frame = 0


Query: 3   PENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPV 62
           PENLL    T +K T GC ILD  + GG++C+SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQF-----SNPSDHIFVEPVHSAHQL 122
           S GGL+ SSLY+H+EFPFPFRRL QLS  F  S+P        NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +R P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+ LRIGNL+YL SSGRRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEEVV----GEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           SR++  +     E   N S  V R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Lcy08g012890.1 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 370.9 bits (951), Expect = 9.2e-103
Identity = 184/297 (61.95%), Postives = 228/297 (76.77%), Query Frame = 0


Query: 3   PENLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPV 62
           PENLL    T +K T GC ILD  + GG++C+SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SSGGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQF-----SNPSDHIFVEPVHSAHQL 122
           S GGL+ SSLY+H+EFPFPFRRL QLS  F  S+P        NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +R P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+ LRIGNL+YL SSGRRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEEVV----GEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGVVGVES 291
           SR++  +     E   N S  V R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Lcy08g012890.1 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-24
Identity = 85/298 (28.52%), Postives = 140/298 (46.98%), Query Frame = 0


Query: 5   NLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPVSS 64
           ++LH  E+  + T  C  LD  +GGG++C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFS--------------NPSD---HIF 124
           GGL   ++YI TE  F   R  Q+++A      +++               P D   +IF
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 213

Query: 125 VEPVHSAHQLFDIMPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALF 184
              V S  +   ++  +E F++        +++++DSI   FR D+D    DL +R+ + 
Sbjct: 214 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 273

Query: 185 FKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAW 244
            +++ K   LAK++SLAVVL NQV      S+G   L +               ALG +W
Sbjct: 274 SEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGDSW 333

Query: 245 ANCVNSRLFLSRNEEVVGEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGV 286
           ++   +R+ L            NG E       R+ ++  +P LP +S  Y +   G+
Sbjct: 334 SHSCTNRVIL----------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRGL 350

[Close]

BLAST of Lcy08g012890.1 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-24
Identity = 85/298 (28.52%), Postives = 140/298 (46.98%), Query Frame = 0


Query: 5   NLLHLLETTQKCTFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPVSS 64
           ++LH  E+  + T  C  LD  +GGG++C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLSASSLYIHTEFPFPFRRLQQLSQAFSSSHPQFS--------------NPSD---HIF 124
           GGL   ++YI TE  F   R  Q+++A      +++               P D   +IF
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 237

Query: 125 VEPVHSAHQLFDIMPKIESFLANRTSRLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALF 184
              V S  +   ++  +E F++        +++++DSI   FR D+D    DL +R+ + 
Sbjct: 238 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 297

Query: 185 FKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAW 244
            +++ K   LAK++SLAVVL NQV      S+G   L +               ALG +W
Sbjct: 298 SEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGDSW 357

Query: 245 ANCVNSRLFLSRNEEVVGEGVMNGSELVQRRTRRWLHVVFAPHLPKSSCEYIINREGV 286
           ++   +R+ L            NG E       R+ ++  +P LP +S  Y +   G+
Sbjct: 358 SHSCTNRVIL----------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRGL 374

[Close]

BLAST of Lcy08g012890.1 vs. TAIR 10
Match: AT5G20850.1 (RAS associated with diabetes protein 51 )

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16
Identity = 73/269 (27.14%), Postives = 116/269 (43.12%), Query Frame = 0


Query: 17  TFGCPILDRSVGGGVACNSLTEIVAESGCGKTQLCLQLSLCAQLPVSSGGLSASSLYIHT 76
           T G   LD+ + GG+   S+TE+  E   GKTQLC  L +  QLP+  GG    ++YI  
Sbjct: 106 TSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDA 165

Query: 77  EFPFPFRRLQQLSQAFSSSHPQFSNPSDHIFVEPVHSAHQLFDIMPKIESFLANRTSRLP 136
           E  F  +RL Q++  F  +        +  +    ++ HQ   ++      +  R +   
Sbjct: 166 EGTFRPQRLLQIADRFGLNGADVL--ENVAYARAYNTDHQSRLLLEAASMMIETRFA--- 225

Query: 137 TRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDLMG 196
             L+++DS  AL+R+DF     +L  R     K    L+ LA  + +AVV+TNQVV  + 
Sbjct: 226 --LLIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 285

Query: 197 SSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVVGEGVMNGSELVQ 256
            S                +G +  P  G   A+   +RL L +                 
Sbjct: 286 GS-------------ALFAGPQFKPIGGNIMAHATTTRLALRKG---------------- 337

Query: 257 RRTRRWLHVVFAPHLPKSSCEYIINREGV 286
           R   R   V+ +P LP++   + I+ EGV
Sbjct: 346 RAEERICKVISSPCLPEAEARFQISTEGV 337

The following BLAST results are available for this feature:

BLAST of Lcy08g012890.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM5	1.3e-101	61.95	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S...	[more]
Q9CXE6	1.0e-34	36.11	DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1	[more]
Q08DH8	6.3e-32	34.01	DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1	[more]
O43542	5.4e-31	36.30	DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1	[more]
O15315	9.5e-28	31.79	DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2	[more]

BLAST of Lcy08g012890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK93	2.7e-150	92.52	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4...	[more]
A0A5A7UPR6	5.0e-149	91.81	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BRJ5	5.0e-149	91.81	DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV...	[more]
A0A6J1FDM2	8.6e-149	91.47	DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P...	[more]
A0A5D3BPT7	3.3e-148	91.13	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Lcy08g012890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150781.1	5.5e-150	92.52	DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical prot...	[more]
XP_008451720.1	1.0e-148	91.81	PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo] >KAA0055575.1 DNA rep...	[more]
XP_038890688.1	1.0e-148	91.13	DNA repair protein XRCC3 homolog [Benincasa hispida]	[more]
XP_022938282.1	1.8e-148	91.47	DNA repair protein XRCC3 homolog [Cucurbita moschata]	[more]
TYK01347.1	6.7e-148	91.13	DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy08g012890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57450.1	9.2e-103	61.95	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT5G57450.2	9.2e-103	61.95	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.1	6.5e-24	28.52	RAS associated with diabetes protein 51C	[more]
AT2G45280.2	6.5e-24	28.52	RAS associated with diabetes protein 51C	[more]
AT5G20850.1	1.7e-16	27.14	RAS associated with diabetes protein 51	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01874	DNAREPAIRADA	coord: 143..167 score: 19.49 coord: 25..53 score: 41.29
None	No IPR available	PANTHER	PTHR46487	DNA REPAIR PROTEIN XRCC3	coord: 1..290
IPR016467	DNA recombination and repair protein, RecA-like	PIRSF	PIRSF005856	Rad51	coord: 2..291 e-value: 2.2E-51 score: 172.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..288 e-value: 2.5E-63 score: 216.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..286
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 15..286 e-value: 1.5E-41 score: 142.4
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 12..191 score: 46.886127
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 17..286 e-value: 6.6032E-77 score: 232.089

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy08g012890	Lcy08g012890	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g012890.1.utr5p1	Lcy08g012890.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g012890.1.exon1	Lcy08g012890.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g012890.1.cds1	Lcy08g012890.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g012890.1.utr3p1	Lcy08g012890.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy08g012890.1	Lcy08g012890.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0071140	resolution of mitotic recombination intermediates
biological_process	GO:0090656	t-circle formation
biological_process	GO:0000722	telomere maintenance via recombination
cellular_component	GO:0033065	Rad51C-XRCC3 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000400	four-way junction DNA binding