Lcy07g015020.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy07g015020.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description50S ribosomal protein L4
LocationChr07: 44017435 .. 44019483 (+)
Sequence length1303
RNA-Seq ExpressionLcy07g015020.1
SyntenyLcy07g015020.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAGCGGGAGTGGATAACGAAGCCATCTGTAGAACTCAGAGAGCACCTCAAAGCTCTTCCAATCGCATCAACAATGGCGACCGCCACGACGCCATCGTCACTCTCCTTCTTCACTTCATCGGTCTTCCTTTCCTCCGCCAACCAAAACTCCAAGCTCTTCTGCAATTGGAAACCTAATTCCCTGAAACCCCAATCCAAGCCCTTATCCATCTCCTCCCAGCTCGCAACTCTTCCAGTCCTTTCCTTCGCCGGAGAAAAAGTCGGCGAGACCTACCTCGACCTGAAGTCCGCTCCACCGGAGACCGCCCGCGCCGTCGTTCATCGAGCCATTATCACAGACCAACAGAACAAGCGCCGTGGTACCGCCTCGACTCTCACCAGAGCTGAGGTCAGTGGAGGCGGCAAAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCCCGCCGCGGTTCGATGCGTACTCCTCTCCGGCCCGGCGGAGGTGTGGTTTTCGGGCCGAAACCTAGGGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAGGATTTCGGTGACAAATTCGAGAAGCCGAAAACTAAAGAGTTCATTTCTGCGCTGAAGAGATGGGGAATCGATCCTAAGGAGAAATCGTTGTTCTTAATGACCGAGGTTTCGGATAATGTGCGACTATCTAGCCGCAATATCGGAACGTTGAAGATGTTGACGCCGAGGACGCTGAATTTGTTCGACATTTTGAATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGATTATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGTATCGAAAACGAGGAAGAAGAAGAAGAAGAAGGTGGAGAAGGCGAAGAAGGTTGATTTTCTTGTCTTTCTCTAATTCAATTATTCAATTAAAGAAATGATACACTTCTTTAAGAACTTACAATGCCGTTGCATACTTCAGTTTTGCCTAGTTGCATCAAATCACATTACAGGGCCTTCTTCTTCTTGATTTCTTGATTTCTTGATTTCTTTATTTCTTCGATACCCTTTTATGATGAGCCTGCCTTAGAATTATGCTATGAATTCTGGTTCTGTTTCTGTTAACATTGCAAGTGCTGTTATAGCCAATAGTCTGTTTGCAAATGGGTTATGCATTGTCATGTTTGTAAAATCGATTTACTCAGGCATGTTTGGAAGTGATTTTGAATTGTCAAAATCACTCTTCTCATGTTTAAATTCACTCCCAGGCATGCATTTGATCATTTTGATTCTTGGTTTACACCTTAAAATGTGATTTTCATACCATCAAAATTGATTTTGAATGATTAAAAGCATGTTTGGTGTTTCAAAATCACTCCCAAACATTCCCTTACATTTTTCATTTTTATAACATCGTTCTTTCTTGTTGCTGCTTCCATTGTCTCACATAAATCACACAACACAGATACTGAAGTTCAGAGAGGGAGAGAGAGATTGTAATTCTTCCACCATTAATGTCTTCTTGTTTGCTTCTTCCACCGTTTCACATCAAATGCACAACACAAACATACTAAAGTTCATAGAGAGAGAGAGAGATTGTGATTCTTCCATTAATGTCTTCTTCACTTTTGGAAACAGGGCTGGAGGCAGGTGAGGATTCGGATGCTGCTGAATGATTCTGCCATTTGCAAATCGTGACAGAAGCTTTCAGTATGTTAACTTGCAGGCTTGAACGGAATCTTTTTTGTTCTTGTACACACAAAGGTATCTCCTTGTTCTCTTTTCCTCATATATCCTAAAGTGTTGTTTGTAGTTGATCTCTTCAAGAATAATCTTTTATTCTTTCGGAATTTGCATTCTGTTATGGCTTCCCTGCACTTTCTTCCTAAGTTAGGAGCTTCCACATTAGTATTTCACGTCCCCATGGCAGTTCCTTTTTCGATAACATGCGGAAATGTTCAAAGAAAAAGAGAACAAACTTTTAGAAGATCATCTTTAAATTAAAATGTTTTGCGTTCCTTAAAAA

mRNA sequence

CTCAGCGGGAGTGGATAACGAAGCCATCTGTAGAACTCAGAGAGCACCTCAAAGCTCTTCCAATCGCATCAACAATGGCGACCGCCACGACGCCATCGTCACTCTCCTTCTTCACTTCATCGGTCTTCCTTTCCTCCGCCAACCAAAACTCCAAGCTCTTCTGCAATTGGAAACCTAATTCCCTGAAACCCCAATCCAAGCCCTTATCCATCTCCTCCCAGCTCGCAACTCTTCCAGTCCTTTCCTTCGCCGGAGAAAAAGTCGGCGAGACCTACCTCGACCTGAAGTCCGCTCCACCGGAGACCGCCCGCGCCGTCGTTCATCGAGCCATTATCACAGACCAACAGAACAAGCGCCGTGGTACCGCCTCGACTCTCACCAGAGCTGAGGTCAGTGGAGGCGGCAAAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCCCGCCGCGGTTCGATGCGTACTCCTCTCCGGCCCGGCGGAGGTGTGGTTTTCGGGCCGAAACCTAGGGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAGGATTTCGGTGACAAATTCGAGAAGCCGAAAACTAAAGAGTTCATTTCTGCGCTGAAGAGATGGGGAATCGATCCTAAGGAGAAATCGTTGTTCTTAATGACCGAGGTTTCGGATAATGTGCGACTATCTAGCCGCAATATCGGAACGTTGAAGATGTTGACGCCGAGGACGCTGAATTTGTTCGACATTTTGAATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGATTATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGTATCGAAAACGAGGAAGAAGAAGAAGAAGAAGGTGGAGAAGGCGAAGAAGGGCTGGAGGCAGGTGAGGATTCGGATGCTGCTGAATGATTCTGCCATTTGCAAATCGTGACAGAAGCTTTCAGTATGTTAACTTGCAGGCTTGAACGGAATCTTTTTTGTTCTTGTACACACAAAGGTATCTCCTTGTTCTCTTTTCCTCATATATCCTAAAGTGTTGTTTGTAGTTGATCTCTTCAAGAATAATCTTTTATTCTTTCGGAATTTGCATTCTGTTATGGCTTCCCTGCACTTTCTTCCTAAGTTAGGAGCTTCCACATTAGTATTTCACGTCCCCATGGCAGTTCCTTTTTCGATAACATGCGGAAATGTTCAAAGAAAAAGAGAACAAACTTTTAGAAGATCATCTTTAAATTAAAATGTTTTGCGTTCCTTAAAAA

Coding sequence (CDS)

ATGGCGACCGCCACGACGCCATCGTCACTCTCCTTCTTCACTTCATCGGTCTTCCTTTCCTCCGCCAACCAAAACTCCAAGCTCTTCTGCAATTGGAAACCTAATTCCCTGAAACCCCAATCCAAGCCCTTATCCATCTCCTCCCAGCTCGCAACTCTTCCAGTCCTTTCCTTCGCCGGAGAAAAAGTCGGCGAGACCTACCTCGACCTGAAGTCCGCTCCACCGGAGACCGCCCGCGCCGTCGTTCATCGAGCCATTATCACAGACCAACAGAACAAGCGCCGTGGTACCGCCTCGACTCTCACCAGAGCTGAGGTCAGTGGAGGCGGCAAAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCCCGCCGCGGTTCGATGCGTACTCCTCTCCGGCCCGGCGGAGGTGTGGTTTTCGGGCCGAAACCTAGGGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAGGATTTCGGTGACAAATTCGAGAAGCCGAAAACTAAAGAGTTCATTTCTGCGCTGAAGAGATGGGGAATCGATCCTAAGGAGAAATCGTTGTTCTTAATGACCGAGGTTTCGGATAATGTGCGACTATCTAGCCGCAATATCGGAACGTTGAAGATGTTGACGCCGAGGACGCTGAATTTGTTCGACATTTTGAATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGATTATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGTATCGAAAACGAGGAAGAAGAAGAAGAAGAAGGTGGAGAAGGCGAAGAAGGGCTGGAGGCAGGTGAGGATTCGGATGCTGCTGAATGA

Protein sequence

MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNSDKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEEGLEAGEDSDAAE
Homology
[Close]
BLAST of Lcy07g015020.1 vs. ExPASy Swiss-Prot
Match: O50061 (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 PE=2 SV=2)

HSP 1 Score: 370.5 bits (950), Expect = 1.7e-101
Identity = 197/279 (70.61%), Postives = 238/279 (85.30%), Query Frame = 0 

Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGE 278
           N+DKLVLTPAAV++LN RYG++  E  E+++E+E EG E
Sbjct: 243 NADKLVLTPAAVEFLNARYGVDAVEE-EDDDEDETEGSE 280

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy Swiss-Prot
Match: O80361 (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.7e-96
Identity = 194/281 (69.04%), Postives = 234/281 (83.27%), Query Frame = 0 

Query: 8   SSLSFFTSSVFLSSAN-QNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGEKVGET 67
           +SLSFF+SS+FLS+ N Q+SK      P  L   +   +I S++AT+P+LSF G +VG T
Sbjct: 3   ASLSFFSSSIFLSNPNIQSSKHLLFRSPKQLS-VAAIATIRSEVATIPILSFDGAEVGST 62

Query: 68  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGKARRGS 127
            L+LKSAP +TARAVVHR + TD +N+RRGTASTLTR+EV GGG KPY QKKTG+ARRGS
Sbjct: 63  TLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGS 122

Query: 128 MRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTK 187
            RTPLRPGGGVVFGPKP+DWS+KIN+KEKRLAISTA++SA+ NTIVVE+F DKFEKPKTK
Sbjct: 123 NRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTK 182

Query: 188 EFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNSDKLVLT 247
           EFI  ++RWG+DPKEKSLFLMT+VSDNV LSSRNIGTLKMLTPRTLNLFDIL+S+KLVLT
Sbjct: 183 EFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLT 242

Query: 248 PAAVDYLNERYGINYE-EGIENEEEEEEEGGEGEEGLEAGE 287
            +AVD+LNERYG   E E  E +++E+ +GGE EE  E+ E
Sbjct: 243 KSAVDFLNERYGDENEWEDEEEDDQEDNDGGEAEESTESSE 282

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy Swiss-Prot
Match: O49937 (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.2e-91
Identity = 183/292 (62.67%), Postives = 232/292 (79.45%), Query Frame = 0 

Query: 1   MATATTPS-SLSFFTSSVFLS-SANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSF 60
           MAT+T+ S SLSFF+SS+F S S N +SK       +S    S  LSI S+L  LP+L+F
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  AGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKK 120
           +GEKVGET+L+LK+APPE ARAVVHR +IT  QNKRRGTASTLTRAEV GGG+KPY QKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 180
           TG+ARRGS  +PLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F +
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 240
            FEKPKTK+FI+A++RWG+DP EKSLF + ++ +NV  S RNI TLK+LTPR+LNLFD+L
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 NSDKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEEGLEAGEDSDA 291
           N++KLV T   + YLN+RYG++  E  + EEEEEEEG E ++G+E G    A
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPA 292

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy Swiss-Prot
Match: Q8DMN0 (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplD PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-55
Identity = 108/204 (52.94%), Postives = 149/204 (73.04%), Query Frame = 0 

Query: 55  VLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPY 114
           V  + G   GE  LDL +A PETA  +VHRA++    N R+GT ST TRAEV GGG+KP+
Sbjct: 6   VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPW 65

Query: 115 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 174
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+S K+NRKE+RLA+ TA+ S   + IVV+
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVEDLIVVQ 125

Query: 175 DFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNL 234
           DF D   +PKTKE ++AL+RWGI+P++K L L  ++++ V LS+RN+ TLK+L    LN+
Sbjct: 126 DFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNV 185

Query: 235 FDILNSDKLVLTPAAVDYLNERYG 259
           FD+L +D++V T  A+  + E YG
Sbjct: 186 FDLLYADRIVATTGAIAKIQEVYG 209

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy Swiss-Prot
Match: B0JI02 (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplD PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.6e-54
Identity = 104/204 (50.98%), Postives = 152/204 (74.51%), Query Frame = 0 

Query: 55  VLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPY 114
           V ++ GE+ G   L+LK+A PETA+ ++HR +++     R+G AS+ TR+EV GGG+KP+
Sbjct: 6   VKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPW 65

Query: 115 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 174
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+ +K+NRKEKRLA+ TA+ S A N IVVE
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQADNFIVVE 125

Query: 175 DFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNL 234
            F ++F +PKTKE  +AL RWG  P+EK L ++TE+ +NV LS RNI  LK++   +LN+
Sbjct: 126 SFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRADSLNV 185

Query: 235 FDILNSDKLVLTPAAVDYLNERYG 259
           +D++ +D+++ T AA+  + E YG
Sbjct: 186 YDVILADRVIATAAALAKIEEVYG 209

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy TrEMBL
Match: A0A6J1D3V7 (50S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017027 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.0e-145
Identity = 281/295 (95.25%), Postives = 290/295 (98.31%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MAT+TTPSSLSFFTSSVFLSSANQNSKLFC+WKPNSLKPQ+KPLSISSQLATLPVLSFAG
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSANQNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFAG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG
Sbjct: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDIL+S
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILDS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEE---GGEGEEGLEAGEDSDAAE 293
           DK+VLTPAAVDYLNERYGINYE GIE++EEEEEE   G EGEEGLEAGEDSDAAE
Sbjct: 241 DKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy TrEMBL
Match: A0A6J1G917 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451819 PE=3 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 8.3e-144
Identity = 276/292 (94.52%), Postives = 284/292 (97.26%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEEGLEAGEDSDAAE 293
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEEGL+AGED DAAE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLDAGEDLDAAE 292

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy TrEMBL
Match: A0A6J1L3A5 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111500015 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.2e-142
Identity = 276/292 (94.52%), Postives = 283/292 (96.92%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEEGLEAGEDSDAAE 293
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEEGLE GED DAAE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEE-LEGEEGLETGEDLDAAE 291

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy TrEMBL
Match: A0A6J1G8Y3 (50S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451819 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.1e-139
Identity = 266/280 (95.00%), Postives = 273/280 (97.50%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEE 281
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEE 280

[Close]
BLAST of Lcy07g015020.1 vs. ExPASy TrEMBL
Match: A0A6J1KZ16 (50S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111500015 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.3e-138
Identity = 266/280 (95.00%), Postives = 273/280 (97.50%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEE 281
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEE-LEGEE 279

[Close]
BLAST of Lcy07g015020.1 vs. NCBI nr
Match: XP_022148353.1 (50S ribosomal protein L4, chloroplastic [Momordica charantia])

HSP 1 Score: 525.0 bits (1351), Expect = 4.1e-145
Identity = 281/295 (95.25%), Postives = 290/295 (98.31%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MAT+TTPSSLSFFTSSVFLSSANQNSKLFC+WKPNSLKPQ+KPLSISSQLATLPVLSFAG
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSANQNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFAG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG
Sbjct: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDIL+S
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILDS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEE---GGEGEEGLEAGEDSDAAE 293
           DK+VLTPAAVDYLNERYGINYE GIE++EEEEEE   G EGEEGLEAGEDSDAAE
Sbjct: 241 DKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]
BLAST of Lcy07g015020.1 vs. NCBI nr
Match: XP_023532270.1 (50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 521.2 bits (1341), Expect = 5.9e-144
Identity = 277/292 (94.86%), Postives = 285/292 (97.60%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEEGLEAGEDSDAAE 293
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEEGLEAGE+ DAAE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLEAGEELDAAE 292

[Close]
BLAST of Lcy07g015020.1 vs. NCBI nr
Match: XP_022948154.1 (50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita moschata] >KAG6605425.1 50S ribosomal protein L4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035374.1 50S ribosomal protein L4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 519.6 bits (1337), Expect = 1.7e-143
Identity = 276/292 (94.52%), Postives = 284/292 (97.26%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEEGLEAGEDSDAAE 293
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEEGL+AGED DAAE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLDAGEDLDAAE 292

[Close]
BLAST of Lcy07g015020.1 vs. NCBI nr
Match: XP_023007555.1 (50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 515.8 bits (1327), Expect = 2.5e-142
Identity = 276/292 (94.52%), Postives = 283/292 (96.92%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +TTPSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEEGLEAGEDSDAAE 293
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEEGLE GED DAAE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEE-LEGEEGLETGEDLDAAE 291

[Close]
BLAST of Lcy07g015020.1 vs. NCBI nr
Match: XP_022948155.1 (50S ribosomal protein L4, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 505.0 bits (1299), Expect = 4.4e-139
Identity = 266/280 (95.00%), Postives = 273/280 (97.50%), Query Frame = 0 

Query: 1   MATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAG 60
           MA +T PSSLSFF+SS+FLSSANQNSKLFCNWKPNS KPQSKPLSISSQLATLPVLSF G
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSANQNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFTG 60

Query: 61  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTG 120
           EKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKTG
Sbjct: 61  EKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF
Sbjct: 121 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180

Query: 181 EKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240
           EKPKTKEFI+ALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLK+LTPRTLNLFDILNS
Sbjct: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGEGEE 281
           DKLVLTPAAVDYLNERYGINYEEGIE+EEEEEEE  EGEE
Sbjct: 241 DKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEE 280

[Close]
BLAST of Lcy07g015020.1 vs. TAIR 10
Match: AT1G07320.2 (ribosomal protein L4 )

HSP 1 Score: 371.7 bits (953), Expect = 5.4e-103
Identity = 195/276 (70.65%), Postives = 236/276 (85.51%), Query Frame = 0 

Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKLVLTPAAVDYLNERYGINYEEGIENEEEEEEE 275
           N+DKLVLTPAAV++LN RYG++  E  +++E+E EE
Sbjct: 243 NADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEE 278

[Close]
BLAST of Lcy07g015020.1 vs. TAIR 10
Match: AT1G07320.1 (ribosomal protein L4 )

HSP 1 Score: 370.5 bits (950), Expect = 1.2e-102
Identity = 197/279 (70.61%), Postives = 238/279 (85.30%), Query Frame = 0 

Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEGGE 278
           N+DKLVLTPAAV++LN RYG++  E  E+++E+E EG E
Sbjct: 243 NADKLVLTPAAVEFLNARYGVDAVEE-EDDDEDETEGSE 280

[Close]
BLAST of Lcy07g015020.1 vs. TAIR 10
Match: AT1G07320.3 (ribosomal protein L4 )

HSP 1 Score: 369.8 bits (948), Expect = 2.1e-102
Identity = 196/277 (70.76%), Postives = 237/277 (85.56%), Query Frame = 0 

Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEG 276
           N+DKLVLTPAAV++LN RYG++  E  E+++E+E EG
Sbjct: 243 NADKLVLTPAAVEFLNARYGVDAVEE-EDDDEDETEG 278

[Close]
BLAST of Lcy07g015020.1 vs. TAIR 10
Match: AT1G07320.4 (ribosomal protein L4 )

HSP 1 Score: 369.8 bits (948), Expect = 2.1e-102
Identity = 196/277 (70.76%), Postives = 237/277 (85.56%), Query Frame = 0 

Query: 2   ATATTPSSLSFFTSSVFLSSANQNSKLFCNWKPNSLKPQSKPLSISSQLATLPVLSFAGE 61
           ++AT P+SLSFF+SS+FLSS++Q  K + +         SKPLS+SSQLATLP+LSF GE
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGE 62

Query: 62  KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKTGK 121
           KVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG 
Sbjct: 63  KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGH 122

Query: 122 ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGD 181
           ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+
Sbjct: 123 ARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGE 182

Query: 182 KFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDIL 241
           KFEKPKTK+F++A++RWG+DPKEK++FLM +V +NV  SSRNIGTL+MLTPRTLNLFDIL
Sbjct: 183 KFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDIL 242

Query: 242 NSDKLVLTPAAVDYLNERYGINYEEGIENEEEEEEEG 276
           N+DKLVLTPAAV++LN RYG++  E  E+++E+E EG
Sbjct: 243 NADKLVLTPAAVEFLNARYGVDAVEE-EDDDEDETEG 278

[Close]
BLAST of Lcy07g015020.1 vs. TAIR 10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-19
Identity = 62/206 (30.10%), Postives = 113/206 (54.85%), Query Frame = 0 

Query: 53  LPVLSFAGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKK 112
           +PV +F  E+ G   L          + ++H  +      +++GT ST T +EVSG G+K
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 113 PYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV--NT 172
           P+ QK TG+AR G++R P   GG V+ GPKPR  +IK+N++ +RL +  A+ + A     
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 173 IVVEDFGDKFEKPKTKEFISALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKMLTPR 232
           +V +D G      KTK  ++   +   + K+  +     + + ++L+++N+  + ++   
Sbjct: 211 LVFDDLG--LPTHKTKNIVNYYNQME-NTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 270

Query: 233 TLNLFDILNSDKLVLTPAAVDYLNER 257
            LN++ IL  D L+++  AV+ + ER
Sbjct: 271 GLNVYSILLHDTLLMSRDAVNKIVER 293

The following BLAST results are available for this feature:
BLAST of Lcy07g015020.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O500611.7e-10170.6150S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 ... [more]
O803613.7e-9669.0450S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=... [more]
O499371.2e-9162.6750S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=... [more]
Q8DMN01.8e-5552.9450S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
B0JI021.6e-5450.9850S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G... [more]
BLAST of Lcy07g015020.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D3V72.0e-14595.2550S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1G9178.3e-14494.5250S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX... [more]
A0A6J1L3A51.2e-14294.5250S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1G8Y32.1e-13995.0050S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita moschata OX... [more]
A0A6J1KZ162.3e-13895.0050S ribosomal protein L4, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3... [more]
BLAST of Lcy07g015020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148353.14.1e-14595.2550S ribosomal protein L4, chloroplastic [Momordica charantia][more]
XP_023532270.15.9e-14494.8650S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022948154.11.7e-14394.5250S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita moschata] >KA... [more]
XP_023007555.12.5e-14294.5250S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita maxima][more]
XP_022948155.14.4e-13995.0050S ribosomal protein L4, chloroplastic-like isoform X2 [Cucurbita moschata][more]
BLAST of Lcy07g015020.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07320.25.4e-10370.65ribosomal protein L4 [more]
AT1G07320.11.2e-10270.61ribosomal protein L4 [more]
AT1G07320.32.1e-10270.76ribosomal protein L4 [more]
AT1G07320.42.1e-10270.76ribosomal protein L4 [more]
AT2G20060.12.2e-1930.10Ribosomal protein L4/L1 family [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 77..256
e-value: 6.4E-54
score: 182.6
IPR01300550S ribosomal protein uL4TIGRFAMTIGR03953TIGR03953coord: 76..254
e-value: 3.1E-58
score: 194.2
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 2..273
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 58..258
score: 29.572424
IPR023574Ribosomal protein L4 domain superfamilyGENE3D3.40.1370.10coord: 36..267
e-value: 3.0E-61
score: 208.5
IPR023574Ribosomal protein L4 domain superfamilySUPERFAMILY52166Ribosomal protein L4coord: 52..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..138

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy07g015020Lcy07g015020gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy07g015020.1.utr5p1Lcy07g015020.1.utr5p1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy07g015020.1.exon1Lcy07g015020.1.exon1exon
Lcy07g015020.1.exon2Lcy07g015020.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy07g015020.1.cds1Lcy07g015020.1.cds1CDS
Lcy07g015020.1.cds2Lcy07g015020.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy07g015020.1.utr3p1Lcy07g015020.1.utr3p1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy07g015020.1Lcy07g015020.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003735 structural constituent of ribosome