Lcy07g009710.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy07g009710.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Eukaryotic rRNA processing
Location	Chr07: 38563537 .. 38577023 (-)
Sequence length	597
RNA-Seq Expression	Lcy07g009710.1
Synteny	Lcy07g009710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTATCAGATAAAAATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCAGATTTTGGATCTGAATCTGCATCTGAATCTGAATCTGAGGAGGAAGAGGATGTAAAATTATCTGAACCATCAAAGAATGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGGAATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGCAGGGGACAAGAATGGTGAAGGATTGGAATTCCGTAATTCCGTAAAACTGAAGCGTGATTGGGACCGATTCGTAATTAATTTTGTTTAATCTAAAATACCAATACATTGACAATAATATTAGAACTATTCTAAATATATATTAAGACTAAGCATACAAAAATATTAGATCTAAATCTAATTTATAAAGTAACAAATTACTTACTCTCGTTGACGACTCATATTAAATTCACCAACTGCTTGTGAATTAATCATGAACTAGTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTATCTGAGAGTAGGAGAATGAATGGGATCCCTTTCACCCCACCCCAGGGGTCCTATATATAGTAAAAGCCAATACCTTTTTCCTAATAGGAAAAAGTCTCTAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTCCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTTTCCTAATAGGAAAAGGTCTCTAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTGCCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATACTTTCTCTCAAGAATTAATTTTTTTTTTTAAATTAATTCAAAAATTATATTATAAAGTTTCATAAACTTTATATTATAATGCATCAATATACATTATACGATTCCCCAAATAAATTGAACACTTTCAATTTACAATTTATACTTAATTGCCTCAAGTCTCTTTACGAGCTACTAGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTGACCAAGTTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAGCTGCACTCTTCTCACTATAGAATATTTCTGTGTCCACGGATATCGACCAAGCAGTAAGTCAATCCTTCACGTGTGTTCGTAACACCAGCTGAGTCAAATTACCGTTTTACCCCTGGGTTACCTCTGGTTCCTTAAGTACCACTGATTCCTCTAATGAACAAGTTGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTGTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGAAGTGAATTCCATCTTGTATTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGTAGGCTTATTGAGTCAGCGAACTGGCCACTCTCACCCATACAAATCTAAGGACAGTCCCTCCTGAAAGGGGTTCATAACAGACTCAGGATTGAGATTGAGTTACCTAGGTCATCCTATTGAAATAGAAACCTAAACTAGTTAACGGCGTTACATCTAGTGGTTACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCTATACTATAGACCATTTAGGTTTTTACTTGGACACTGATCCCCGTATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCAATTATTCAATAACCAAATTACTGAATTACTCAAATAACACTTTATTGAGATCGATTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAACTCCCACTTGAACTAAAACTCTAGTGGGCAATGTACATCAACAATCAAAATTGAATGAATAATCATTGAAGTAGGAATAGTAGTTTGTATTAATACTGTATAATACATGAAAAGTACAAATACAGATAAATACAATAAACTGGGGCATTCACAATACCCATTACACTTCTCCCACTTGCCCTAGATTATTCTATGTACATATCTCGCAGACCTAGACCCTCTAGATGACCCTCGAACACTTTAGCCGTGAGAGCCTTCGTAAATGGATCAGCAATATTGTGCTCAGAGGCTACCTTTGTGACGATCACGTCCCATCGTTGCACGATCTCTCTGATGAGATGATATTTGCGCTCTATGTGCTTGCCTCTTTTATGATTGCGAGGTTCTTTAGAATTTGCCACTACACCACTATTATCACAGTAAAGGGTGATTGGCAAGTTCATATTTGGAACAACTTCCAAATCCATCAAGAACTTCCGTAGCCATACAGCCTCCTTAGCTGCTTCACAAGCAGCGACATATTCGGCCTCCATGGTGGAGTCTGCAATGCATCCTTGCTTGATGCTACGCCAGACTACAGCTCCCCCGTTGAGGGTAAATACTGACCCTGATGTAGATTTCCTAGAATCCTTATCAGTCTGAAAGTCAGAGCCTGTGTATCCTATAAGGATCAAATCCTTAGAGCCATACACAAGCTGATAGCCCCTCGTTCTCCGAAGATACTTGAGGATGTTTTTAACGCAGTCCAATGGTCTAACCCTGGATTGGACTGGTACCTGCTGACAATCCCAACTGCATAGCAAATGTCAGGCCTAGTACACAACATGGCGTACATAAGACTACCCACAGTTAAAGCATAAGGGATGTGTCTCATATCCTCAATTTCTTGAGGTGTCTTAGGACACTGTTCCTTAGACAAATGAACTCCATGCCTAAAGGGTAGTAAACCCCTCTTGGAATTCTGCATCTTATATCTAGACAACATCTTGTCTATATATGATGCTTGAGACAGGGCTAACGTTTTGTTCTTACGATTCCTGATAATTTGAATCCCTAGAACATACTGAGCTTCACCCAAATCTTTCATTTGGAACTCAGTCGATAGCCATTTTTTAATGTCAGCTAGATATTCTACATCATTTCCAATGAGAAGAATATCATCTACATACTGTAAGGATTTGGAATTCCCTAATTCCGATAAAGCGGAAGCGTAATTGGGACCGATTCGTAGTTAATTTTGTTTATCCAAAAATACTATTACATTGGCAAAAAACATAGAACAAATTCTATACAAACTTAAGGCTAAGCATACAAAAATTATTAGATCTAAATCTAAAGGGGAGAAGCAAACATACCGTCGTTGACGACTCTGAATACTTCAACGGACACCTTTCTTGATTTTGGACCAACATCAACAATTGGGACACCACCAATTGATCTTCCCCGCTATGACTCTGAGATTAGGAACGTAGTTGTGGGACTACCTAATCTTGAATGGGAAAAACTCTAGAGAGAAAATTCTCCCTAGAGTTCTTGGGTTGAGAGAATATGAGAGGGAGGCTAGAGAGAATGCAAGAATGCATTCTTGTGGCCTTGTGTGGCCTTATGTTGTAGTACCTAAACCCTAGTGTTCTATTTATAGGAGAAAGGCCATGAATAAAATATTCATTTAAAATCAATTATTTCCATAACTGATTTAATCTTTTCCATAATTAATCAATTCCATGACCAACCAATTCCATGACCAATCAATTCCATAATTGATTAATCTTTTCCATAAATGATTGATCACTTCCATAAGTGATTAAATCATTTCCATAAATGATTAATTACTTCCATAAGTGATTAATCATTTTCATAATTGATTAATTTCCAATTAATTAATTCTTTAATTAATTAATCACCAATTAAATATCATATATTTAATTTCAGACCTTCTATTAGTTAATTAATTAATTACCCAATTAAATATCATATATTTAATTTGAGGCCTTCAATTAATTAATTCTATAATATGAATCAAATTCATATTAAAATTTGAACTCCTTCAAATTCTCTTATATCCTATAAATTTAATATGAATCAAATTCATATTAATATTTGAACTTCTTCAAATATTTATTTCTCTCATAGACTATAGTTTAATTAAATTTCATTTAATTTAAACTAAATTGAATAATTAATTAATTCATAATTAATTAATTCATCTTCTAATTAAATACCATATATTTAATTAGACATATATTTGAACTCTTTCAAATATATCAATCTCTCAATATTATAAAGTTTAATCTCAAATTAGACTTTATATTTTAATGCATCACTATACATTATATTAATTTGTATCTCGTACAATTAACTTAATTCCCAATATGAATTTGAACTATTCAAATTTTCTCAAGATATATTTGTTCCTAATTACTCTTTACGAGCTAGCAGGGGGACCTGATGGACCTACAGATCAGAAGCTCCAATGATATGAGGTTAATAGATTAAACTCATTAATCAGGTTAACCAATATTCATTAACTGTGGGTCATTCCACTAAAGACCCACAGCTGAACTCTTTTCACTGTAGAACATTTCTGTGTCCATGGATGTAGACCTATGCCGGTAAGTCAATCCTTCACGAGTGTCCGTAATCACAGCTGGGTCAAATTACCGTTTTACCCCTGTGTTACATCTGTCTCCTTAAGTACCAGCGCTCCTCTAATGAACAACCTGTTTATGGTCCAACCATTAAATAGAAAGTCCCTCTCGGGCCAGTGAGAGGGCGGGATCCCTTTGTTCAAGTCCCGGAGTCACCACTTAAGGGAACACTCATCTACTTCACTTAGAAGCGGGAAGGAGTGAATTCCTTCTTGTGTTGTCATGTCCCCAGCCTCCCACACGGTCTTGTCCCCAAAAAGGAAGGCATATTGAGTCGGCGTATTGGCCACTCTCACCCATGCTAATCAAAGGACAATCCCTCATGAGAAGGAGTTCATGACACACTCAGGATTAAGACTGAGTTACCTAGGTCATCCTATTGAAACAGTAACCTAATTAGTTAACGGTGTTATAACTAATGGTTGGCTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACTTGCATGTCTACTACATGGACGTTTTTGATCAATACGTCTGTATCAAATACAAAGCGGGTCGTATCTCATAGTGTTACCAGGATAAGGTACCCAACCTTATCCTTGTACTATAGACCTTTTAGGTTGTTACTTGAACATCGATCCTCGTATGTCCCCACATACTAGTACAAGTTACATACAAACAACCTTGGATCTTAGTTTATTGGATTTGGGTCAAATTGTGCAATATTTAACAATAACACTTTATTGTAGAAACTCAATAACACTTTATTGAAATAAGTATACAATTTGTTTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACACATACAACACCAGAAAAGCTACTGAACTGTTGATAATCCTTTTGTAAACACAAGACTCATCAACGTTCTGGTCAAAGCCATAAGATTTGACAGCAGTGTCAAACTTTATATTCCAAGATCTGGAAGCTTGCTTCAGCCCATAAATGGATCCTCTAAGCTTGCAAACTTTTTGCTCTTGACCTTGAGCAACGAACCCCTCTAGTTGAGACATAAAGATGTTCTCATCAAGATTGCCATTCAGAAAGGCAGTCTTGACGTCCATTTGTCAAATCTCATAATCATAAAAGGTAGCAATGGACAAGAGAATTCTTATCGACTTTAACATGGCAACTGGGGAGAAGGTTTCCTCATAGTCCACCCCCTCCTTTTGGGTATAACCCTTTGCCACAAGTCGAGCTTTGAAAGTCTGTACTTTCCCAGCTGCGTCTCGTTTTCTCTTGTAGATCCATTTGCACCCTATGGGTTTAACCCCTTCAGGTAGGTCTACAAGATCTCAGACTTGATTGAAGTACATAGACTCCATCTCTAGGTCCATAGCTTTGACCCACTGGTCATGGTCCACATCATTCATTGTCTGTCTAAAGGTCAATGGATCCTCAACCCCATCATCAGGTATGACAGTTGGAGTTTCTGCTAAACCCAGATAGCGTTCAGGTTGAATAACAACCCTCCCACTACGTCGAGGCATTCTCAACTCTTGAGAAGGATGGGCTTGACCAGATGTACTGGGCTCATCAATAACTCTTGTTGAAGGTCCAGCCTCTGAACTGGGCTCATCAACAACTCTTGTTGAAGGTCCAGCCTCATCAACAACTCTTGTTGATTTATTTGTAACTTTACCAGAAAGTTCACTTAACACAATTTTACTGCGTGGTATGTGTTCTTTAACGTGGTCTTCTTCCAAGAAAGTAGCATTTGTCGATACAAACACTTTATTTTCTTTTAGATCAAAGAAGTATCCACCTCTTGTTTCTTTTGGGTAGCCTACGAATAGGCATAATTTTGAACGTGAATCCAATTTCTTTGGGTTTGCTACTAACACATGTGCAGGGCAGCCCTAAATTCTGAAATGACATAAACTAGCTTTATGCCCTTTCCAAAGCTCAAATGGTGTTTCAGAAACACTATTTGAGGGAACAACATTCAAAATATAAACTGCAGTCTCTACTGCATTACCCTAAAAAGAACTAGGCAACTGAGCATAGCTCATAATAGATCGAATCATGTCTAACAAGGTTCTGTTTCTCCTTTCAGATACACCATTTTGTTGAGGTGTACCTGGTGCTGAGAGTTGGGACGATATTCCATGTTCTATCAAATAGTTTTGGAATTTTAAGTCCAAATACTCTCCACCTCGATCAGATCGAAGTGTTTTAATGGTCTTACCTAACAAGTTCTCAACTTCAATCCTGTACTCCTTGAACTTTTCAAGGGCTTCAGACTTATGACTCATTAGGTATAAATAACCATACCTTGAATAATCATCTATGAAAGAGATGAAATATTCATACCCTCCTCGAGCTCTTACATTCATTGGACCATAGAGATCCGTATGTACGAGTTCTAAGGACTCCTTGGCACGATAACCTTTTCCAGTAAAAGGTCGTTTGGTCATCTTACCTTCGAGACATGACTCACATGGAGGTAAAGTACCATCTTCTAACTGGCTTAGAAGTCCGTTCTTAACCAATCTCCCAATCCTATTGAGATTTATGTGGCCAAGTCTCAAGTGCCAAAGATAGGTACTTTGAGAAACTTTTTGCCTTTTTGGTTGAGTCTCAGCTGTTTTAAACATTTCATTGTTCAAAATAGCCCTAGACTCTATTGGTCTTAAGACATACAAATTGTTCTCCATTTTTGCAGAACATATATCAGCACCCCTTTTAGTAATGACAGCTTCATTCACAGAAAAAGACACTGAATACCCTTGTTCTAGCAAACAAGAAATAGAAATCAAATTTCTTTTTATTCTGGGAACTATATATACGTTATCTAATAACATATAGCGTTCCCTGGAGAAGAACATTTTAATATCTCCCACTGCTTTAGCTGAAATGAGCTCCCCAGTCCCAACTCTGAGAGTCATTTCCCCAGCATCCAACTGTTGCCAGGAGCTCATTCCCTCAAAGGAAGAGCATACATGATGAGTGGCACCTGAATCTAGGATCCAGGCTGTGTCATCATTTTCCACTATACACGTTTCAATGATCAATAAATCAAATTTATTTTCATTGAGATGTGCTAAGCAGTCTATGTCATATTCATCATGAACAATTTCGGAAAAATTAGACATATGGGCTTGAGGACCGTCCTGAGTTAAGACCAATTCCACGCATTTAGTGTTTAAGTTCATTTTTTTTAGTTGTATTAGAAATACCAGTTTTGTAGTTGGCGTTATTCGAGGAATATAAAGAACGTTTCATTGCTGAGAACAAACAAACTAACTTAATAAGTATTGTTACATTAACCCATTACACAAAATATAAATATTATTTTAATCCAATCAATTTAGCAAAAGTAATGATTAACCCATAGAATAAACATTCATTTTGCAACGATACTTCAGAGGTTTAGAACAACAGCTACCGTAGGGTAGTCAGCTACTCCTCCTCTGAATTGAGACAATCTCAGCTAATCCATATTCTCGGAATAACTCATATTCCAATAGTTCTTAGCTACCGTTTTTTCGGTCAGGAAATTATTAACACCTTAACAATTTCCCGTAAGTGTGACCCTCCATTTTTCAGATTTCAGAGGTCGGCCCCAACAATGCTACCGTAGGGAAAGTCAAAGTTGGAAATGGACCTAAGAAACCCTATCCATTTCTAGAGTTTGCGTTGTTCCGACTCCCATGATCAAGCCCTCCATAGGGTGATCGCTCCTAGGGCGACTCGCAGGCAGATCATTGGGATCTCACGGTGCAACCTAATGGAGGAGACCGTAGGATACGTTGACACGTTCCTGCTCCCACTTACTATAAAATACTCCCTCATTCACCTTGATATTGATCCATGCAAACACCATCCATAGGGGGTCACTCCCAGGGTGACTCGAGGCCAAGCATGAACCTCACGTTGTGAACTTTTGAGGACGTGAGAGCAAAACTTGATTTATGAAAATCTTGTTTTGATATATTTCCTCCCACTAAGTATTTTTATAATTATAGGGTCTATTACTTAGGTAAATTCCGGCTAAGTGAATCTATCTAAGTCTATGCCTGTATATAACTTTTATATATATAGGTCTTTTCTCTAATGTCTAGGTGGATTAAACACTTTTAATTACCTAGAGACATTGCATGCTAATATAACTATGGTTAATTCAACTCAAGTTCCGGCTCAGTTCCCAGGTAGCAGGTGTTCCGTAAACCGTCATCTTAAGTACCTCCAGCCTTAGACTGAACTTTACCGGTAGAGTTCCCTTATAACCAATAGTTATGATAAATCTTTACTCTAAAGATCTAAGTGAATTAAACTCTTTTAATTGACCTAGTGATATTGCATGCTAACATAACTATGGTTAATTCAACTCAAGTTCCGAGTCAATTCCCAGTTAGCAGGTGTTCCGTAAACCGTCATCTTAAGTATCTCCAGCCTTAGACAGAACTTCATCGGGAGAGTTCCCTTATAACCATAGTAAAGTAAACTCTTTACTCTAAAGATCTAGGTGAATTAAACTTTTTTAATAAACCTAGTGATATTGCATGCTAACATTTAACTATGATTAATTCAACTCCGGTATTCCGGGTTAGTTCCCAGGTAGGAGGTGTTCCGTAAACCGTCATCTTAAGTACCCCCAGCCTTAGACAGAACTTAACCGGTGGAGTTCCCTTATAATCATAGTAATGTTTTTCCTACTTAGTCAACTAAAACTATTTTTAATTCTAAGTAAGAAAATAATTCTAATCCTATTAGAATTATAATGAGCTTAGGTCTAATTAATTTTAAACATTTTAAAATTAATTCATTTTAACCTAAGGTCCTATGTTTGCATGCAACTCTTTGTTATAGGTTGACGGTTTCTAATCAATTTTATAACTTATTATAAAATTTTAATGATTAGCCCTATAACATGCTTCTATGGTGTTGGAAAAATAACAATCATATTCTAATTATTCAACACCATATTATTATAACGCAGATAATGATAATATAACGATTATATTAATCTAAAGTGGTGTCATGCTTCATGCAATTTCAATTTCATTTAATTAATATCGATTATATTAATTAAACATCCATGAAATTAAATTACATGAAATTTGACATTAATATAATATAACTCTTATATTAATCTAATTAATGTCATGCTTAATGCTATTCCATTTTCATTTAATTAATATAACATTTTATATTAAATCATACATGAAAACAAGCATTGATTTATATTTATTATTTTCATTCATAATATAACTAATTATATTAATTCTCATGAAAATAATGCTAAGCATGCATGCTACATTAATAAAATATAACAATTATATTTATCTAATTAATGTCATGCATCATGCTTTTCCAATTTCATATATTTAATATAACAATTATACTAAATAACTCATGAAATATAAATTCATGCATAATTATCATATATTATAACATTTATAACATAAATATGCATGAAACATGCTTAACCTATGGTGGGAATTTAAGCTATATGACATCCATAAAGCAAATAAGTAGCAATTGAACTGGTTAATTTTGGCCCCTAGGATAAAATAAAGCATAAATTACAATAATTATAGCTATATTCTATCCTTAAAGTCCTTCTGCAGCTCCAAATACTGGTCTAGACCGCCTGAACCAACCCGAACCACTTCGAACCAGCTACGAAAATCACGAACCGAGCTAAATTCCAGCTGAACCGGAACAAATTGGTCCCAACCCAGCGAGACCACGTGAATCGGACCGCCCAACAGCCTTGAACCGTCCTGTTGCGAATTTCTAGCGCGTGCTGTAATCGTGACAGCGTCGCAATTTCTCCGATTTTTATCTCATAAAAACCTATTCTAGACCCGGACTTACATAGGACTCGATTTTACATAAAATACCCGAAACACCAGGCCCTTACATGATCAAATCACATAAAAACAGTAAAATCTATGGCCATAAAATTAACCTAAACAGTTCAATGCAAATCATACATACATTATGTATTAATCAATCTCACCAATAGCCAATGCAAATTTTAGAGAAACAAAATTAGATCTACGATCGGCTCTGATACCAATTGAAGGATTGGAATTCCATAATTCCGTAAAGCGGAAGTGTGATTGGGACCGATTCGTAATTAATTTTGTTTAATCTAAAATACCAATACATTGGCAATAATATTAGAACTATTCTAAATATATATTAAGGCTAAGCATACAAAAATATTAGATCTAAATCTAATTTATAAAGTAACAAATTACTTACTCTCGTTGACGACTCATATTAAATTCACCAACTGCTTGTGAATTAATCACGAACTAGTGCGAACACCACCACTATGGCTACATCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGCTTTTGGGAGAATTCTCTGAGAGTAGGAGAATGAATGAGATCCCTTTCACCCCACCCCAGGGGTCCTATATATAGTAAAGGCCAAGACCTTTTTCCTATTAGGAAAAGGTCTTCCTAATAGGAAAAGGGAGACCTTTTCCTAATAGGAAAAAGTCTCTAATTTTAATAAATAATTAATTAATTTTCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTTTCCTAATAGGAAAAGGTCTTTAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTACCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATACTTTCTCTCAAGAATTAATTTTTTTTTAAAATTAATTCAAAAATTATATTATAAAGTTTCATAAACTTTATATTATAATGCATCAATATACATTATACGATTCCCCAAATAAATTGAACACTTTCAATTTACAATTTATACTTAATTGCCTCAAGTCTCTTTACGAGCTACTAGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGACCAAACTCATTGACCAAGTTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAGCTGCACTCTTCTCACTATAGAATATTTCTGTGTCCACGGATATCGACCAAGCAGTAAGTCAATCCTTCACGTGTGTTCGTAACACCAACTGGGTCAAATTACCATTTTACCCCTGGGTTACCTCTGGTTCCTTAAGTACCACTGATTCCTCTAATGAACAAGTTGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTGTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTCCATCTTGTATTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGTAGGCTTATTGAGTCGGCGAACTGGCCATTCTCACCCATACAAATCTAAGGACTGTCCCTCTTGAAAGGGGTTCATAACAGACTCAGGATTGAGATTGAGTTACCTAGGTCATCCTATTGAAATAGAAACCTAAACTAGTTAACGACGTTACATCTAGTGGTTACTATTTCGCGGTTCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGATTCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCTATACTATAGACCATTTAGGTTGTTACTTGGACACTGATCCCCGTATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATTACTCAAATAACACTTTATTGAGATCGATTAATTTGTTTCATTTACTATCTACAAGTTTTAGGGCATAAAACCCAACAAATGGCCCTTGAGAAGTTCCAATCTTTAGGACTTCCTTTCCTCAGGCCTTCAGACTATTATGCAGAGATGGTGAAGACAGATACTCACATGGAAAAAGTGAAAGGTCGGCTGCTGTCCGAACAGAGAAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAATTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAATAGGAGATTGAATTTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGAGATGGACTTGTCCTTTGAAGATGGAAAGGCATTTGAGAGGTCTGGTGGTACGAAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGCGGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGATATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG

mRNA sequence

ATGGGTGTATCAGATAAAAATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCAGATTTTGGATCTGAATCTGCATCTGAATCTGAATCTGAGGAGGAAGAGGATGTAAAATTATCTGAACCATCAAAGAATGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGGAATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGAGATGGACTTGTCCTTTGAAGATGGAAAGGCATTTGAGAGGTCTGGTGGTACGAAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGCGGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGATATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG

Coding sequence (CDS)

ATGGGTGTATCAGATAAAAATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCAGATTTTGGATCTGAATCTGCATCTGAATCTGAATCTGAGGAGGAAGAGGATGTAAAATTATCTGAACCATCAAAGAATGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGGAATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGAGATGGACTTGTCCTTTGAAGATGGAAAGGCATTTGAGAGGTCTGGTGGTACGAAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGCGGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGATATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG

Protein sequence

MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEKWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

Homology

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BLAST of Lcy07g009710.1 vs. ExPASy Swiss-Prot
Match: Q9LUJ5 (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-36
Identity = 118/297 (39.73%), Postives = 143/297 (48.15%), Query Frame = 0


Query: 11  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGD 70
           L ED + DD++   D    +D  +ES S+S++E E   KL+EP+K AIYN DGLLDKL D
Sbjct: 3   LEEDIVSDDEMNMIDEDDATDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQD 62

Query: 71  ISWPENVEWIHKLTLDIDQ----------------------------------------- 130
           ISWPE+V+W HKLT++IDQ                                         
Sbjct: 63  ISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRP 122

Query: 131 ---------------------------------------------------------EK- 190
                                                                    EK 
Sbjct: 123 ANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKK 182

Query: 191 ------EKWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDRSGGKARH 198
                 +KWRKQRQ+SGF+  DK GE +L FE GK+F+R GG KRPGVSPGDRSGGK R 
Sbjct: 183 DNIESVKKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGRP 242

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BLAST of Lcy07g009710.1 vs. ExPASy TrEMBL
Match: A0A6J1EEP4 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111433474 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.7e-74
Identity = 178/308 (57.79%), Postives = 189/308 (61.36%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIY 60
           MGVSDK+ARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKLSEPSK AIY
Sbjct: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NADGLLDKLGDISWPENVEWIHKLTLDIDQEKE--------------------------- 120
           NADGLLDKL DISWP+NVEWIH+L LDIDQEKE                           
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 ------------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVS 199
                             KWRKQRQKSGFAGGDKGG+M+LSFEDGKAFERSGG KRPGVS
Sbjct: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240

[Close]

BLAST of Lcy07g009710.1 vs. ExPASy TrEMBL
Match: A0A5D3DB33 (Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001370 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.4e-72
Identity = 176/306 (57.52%), Postives = 186/306 (60.78%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADG 60
           MGVS K+A FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADG
Sbjct: 10  MGVSIKDAEFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 69

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKE------------------------------- 120
           LLDKLGDISWPENVEWIHKLT DIDQEKE                               
Sbjct: 70  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 129

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 130 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 189

Query: 181 --------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDR 199
                         KWRKQRQK+ FAGGDKGG+MD SFEDGK FERSGG KRPGVSPGDR
Sbjct: 190 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 249

[Close]

BLAST of Lcy07g009710.1 vs. ExPASy TrEMBL
Match: A0A1S3CT69 (probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC103504670 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.8e-72
Identity = 176/306 (57.52%), Postives = 186/306 (60.78%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADG 60
           MGVS K+A FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADG
Sbjct: 1   MGVSIKDADFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 60

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKE------------------------------- 120
           LLDKLGDISWPENVEWIHKLT DIDQEKE                               
Sbjct: 61  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180

Query: 181 --------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDR 199
                         KWRKQRQK+ FAGGDKGG+MD SFEDGK FERSGG KRPGVSPGDR
Sbjct: 181 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240

[Close]

BLAST of Lcy07g009710.1 vs. ExPASy TrEMBL
Match: A0A6J1H264 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459763 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.7e-71
Identity = 177/303 (58.42%), Postives = 185/303 (61.06%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGL 60
           MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNAIYNADGL
Sbjct: 1   MGVSDEKDSFLNEDTMEDDDLDSEDSDFGSE--SESESEEEEDVKLSEPSKNAIYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKE-------------------------------- 120
           LDKLGDISWPENV WIHKL+LDIDQEKE                                
Sbjct: 61  LDKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLG 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAKEIQAQKLKE 180

Query: 181 -------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDRS 199
                        KWRKQRQKSGF+  DKGGEMDLSFEDGKAF+RSGG KRPGVSPGDRS
Sbjct: 181 RAKQKKEEIESVKKWRKQRQKSGFS--DKGGEMDLSFEDGKAFDRSGGKKRPGVSPGDRS 240

[Close]

BLAST of Lcy07g009710.1 vs. ExPASy TrEMBL
Match: A0A6J1IZU9 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480644 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.7e-71
Identity = 173/303 (57.10%), Postives = 184/303 (60.73%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGL 60
           MGVSDK+ARFLNEDTME+DDL +EDSDF SES S    EEEE+VKLSEPSK AIYNADGL
Sbjct: 1   MGVSDKDARFLNEDTMENDDLSNEDSDFESESES---GEEEEEVKLSEPSKTAIYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKE-------------------------------- 120
           LDKL DISWP+NVEWIH+L LDIDQEKE                                
Sbjct: 61  LDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLG 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKE 180

Query: 181 -------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDRS 199
                        KWRKQRQKSGFAGGDKGGEM+LSFEDGKAFERSGG KRPGVSPGDRS
Sbjct: 181 RAKQKKEEIESVKKWRKQRQKSGFAGGDKGGEMELSFEDGKAFERSGGKKRPGVSPGDRS 240

[Close]

BLAST of Lcy07g009710.1 vs. NCBI nr
Match: XP_022926294.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 9.7e-74
Identity = 178/308 (57.79%), Postives = 189/308 (61.36%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIY 60
           MGVSDK+ARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKLSEPSK AIY
Sbjct: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NADGLLDKLGDISWPENVEWIHKLTLDIDQEKE--------------------------- 120
           NADGLLDKL DISWP+NVEWIH+L LDIDQEKE                           
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 ------------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVS 199
                             KWRKQRQKSGFAGGDKGG+M+LSFEDGKAFERSGG KRPGVS
Sbjct: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240

[Close]

BLAST of Lcy07g009710.1 vs. NCBI nr
Match: KAA0055124.1 (putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa] >TYK20735.1 putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-72
Identity = 176/306 (57.52%), Postives = 186/306 (60.78%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADG 60
           MGVS K+A FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADG
Sbjct: 10  MGVSIKDAEFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 69

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKE------------------------------- 120
           LLDKLGDISWPENVEWIHKLT DIDQEKE                               
Sbjct: 70  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 129

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 130 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 189

Query: 181 --------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDR 199
                         KWRKQRQK+ FAGGDKGG+MD SFEDGK FERSGG KRPGVSPGDR
Sbjct: 190 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 249

[Close]

BLAST of Lcy07g009710.1 vs. NCBI nr
Match: XP_008467285.1 (PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo])

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-71
Identity = 176/306 (57.52%), Postives = 186/306 (60.78%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADG 60
           MGVS K+A FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADG
Sbjct: 1   MGVSIKDADFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 60

Query: 61  LLDKLGDISWPENVEWIHKLTLDIDQEKE------------------------------- 120
           LLDKLGDISWPENVEWIHKLT DIDQEKE                               
Sbjct: 61  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180

Query: 181 --------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDR 199
                         KWRKQRQK+ FAGGDKGG+MD SFEDGK FERSGG KRPGVSPGDR
Sbjct: 181 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240

[Close]

BLAST of Lcy07g009710.1 vs. NCBI nr
Match: XP_022958567.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita moschata] >XP_022958569.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata])

HSP 1 Score: 278.9 bits (712), Expect = 3.5e-71
Identity = 177/303 (58.42%), Postives = 185/303 (61.06%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGL 60
           MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNAIYNADGL
Sbjct: 1   MGVSDEKDSFLNEDTMEDDDLDSEDSDFGSE--SESESEEEEDVKLSEPSKNAIYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKE-------------------------------- 120
           LDKLGDISWPENV WIHKL+LDIDQEKE                                
Sbjct: 61  LDKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLG 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LPFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAKEIQAQKLKE 180

Query: 181 -------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDRS 199
                        KWRKQRQKSGF+  DKGGEMDLSFEDGKAF+RSGG KRPGVSPGDRS
Sbjct: 181 RAKQKKEEIESVKKWRKQRQKSGFS--DKGGEMDLSFEDGKAFDRSGGKKRPGVSPGDRS 240

[Close]

BLAST of Lcy07g009710.1 vs. NCBI nr
Match: XP_038876320.1 (probable rRNA-processing protein EBP2 homolog [Benincasa hispida])

HSP 1 Score: 278.9 bits (712), Expect = 3.5e-71
Identity = 172/303 (56.77%), Postives = 184/303 (60.73%), Query Frame = 0


Query: 1   MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGL 60
           MGVS K+A FLNED ++DDDL SEDS+F  ES SESESEE+EDV+LSEPSKNAIYNADGL
Sbjct: 1   MGVSVKDASFLNEDKIDDDDLHSEDSEF--ESESESESEEDEDVELSEPSKNAIYNADGL 60

Query: 61  LDKLGDISWPENVEWIHKLTLDIDQEKE-------------------------------- 120
           LDKLGDISWPENVEWIHKL+LDIDQEKE                                
Sbjct: 61  LDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGARMALEKFQSLG 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKE 180

Query: 181 -------------KWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDRS 199
                        KWRKQRQK+GFAGGDKGG+MD SFEDGK FERSGG KRPGVSPGDR+
Sbjct: 181 RAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRT 240

[Close]

BLAST of Lcy07g009710.1 vs. TAIR 10
Match: AT3G22660.1 (rRNA processing protein-related )

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-37
Identity = 118/297 (39.73%), Postives = 143/297 (48.15%), Query Frame = 0


Query: 11  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGD 70
           L ED + DD++   D    +D  +ES S+S++E E   KL+EP+K AIYN DGLLDKL D
Sbjct: 3   LEEDIVSDDEMNMIDEDDATDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQD 62

Query: 71  ISWPENVEWIHKLTLDIDQ----------------------------------------- 130
           ISWPE+V+W HKLT++IDQ                                         
Sbjct: 63  ISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRP 122

Query: 131 ---------------------------------------------------------EK- 190
                                                                    EK 
Sbjct: 123 ANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKK 182

Query: 191 ------EKWRKQRQKSGFAGGDKGGEMDLSFEDGKAFERSGGTKRPGVSPGDRSGGKARH 198
                 +KWRKQRQ+SGF+  DK GE +L FE GK+F+R GG KRPGVSPGDRSGGK R 
Sbjct: 183 DNIESVKKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGRP 242

The following BLAST results are available for this feature:

BLAST of Lcy07g009710.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ5	2.2e-36	39.73	Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lcy07g009710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEP4	4.7e-74	57.79	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3DB33	3.4e-72	57.52	Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CT69	5.8e-72	57.52	probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1H264	1.7e-71	58.42	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IZU9	1.7e-71	57.10	probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Lcy07g009710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926294.1	9.7e-74	57.79	probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]	[more]
KAA0055124.1	7.0e-72	57.52	putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa] >T...	[more]
XP_008467285.1	1.2e-71	57.52	PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo]	[more]
XP_022958567.1	3.5e-71	58.42	probable rRNA-processing protein EBP2 homolog [Cucurbita moschata] >XP_022958569...	[more]
XP_038876320.1	3.5e-71	56.77	probable rRNA-processing protein EBP2 homolog [Benincasa hispida]	[more]

BLAST of Lcy07g009710.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22660.1	1.6e-37	39.73	rRNA processing protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008610	Eukaryotic rRNA processing	PFAM	PF05890	Ebp2	coord: 88..194 e-value: 7.4E-12 score: 45.3
IPR008610	Eukaryotic rRNA processing	PANTHER	PTHR13028	RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED	coord: 88..197 coord: 13..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..198
None	No IPR available	PANTHER	PTHR13028:SF1	BNAC03G42920D PROTEIN	coord: 88..197 coord: 13..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy07g009710	Lcy07g009710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g009710.1.exon2	Lcy07g009710.1.exon2	exon
Lcy07g009710.1.exon1	Lcy07g009710.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g009710.1.cds2	Lcy07g009710.1.cds2	CDS
Lcy07g009710.1.cds1	Lcy07g009710.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy07g009710.1	Lcy07g009710.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus