Lcy07g009460.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy07g009460.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S12
Location	Chr07: 38188603 .. 38193171 (-)
Sequence length	480
RNA-Seq Expression	Lcy07g009460.1
Synteny	Lcy07g009460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCTAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTTTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTAGTCAAGGCACTTTGTGCTGAGCATAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCTGGTGTAAGTGTTTAATTTTTCTTAATTTTATTTAGCCATCGAGATTAAAATGGTTAACATTTGATATGATGGGTTTTTCCCATCTGTCATCACTTGTATTGTATTTATTCTACTATGATCAACCTACACCTGTCAATACTTGGCTATATGTTCTTACCGGTTGATACTTAGTTGCATGTTTTACATGTTCTGGATCACACACATATATAATCTCTTCATGCATAATCAAGAAAAATATTTCTTTTTCCCTCCTAACATGTCCTGTTAACATCAATGTTGGGAAAATTCATTAATATTTGCATTCTACACCATTTGTTTGAGTTTGATTTCAAGATGCAACCTATTGGAAGTTTTCGTTGATCTGATTTTGGATAATAAGTCATTTTTTTTTCATATTTGGTCTAATGCAGCTATGCAAGATTGATTCGGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCTTGTGTTGTAGTTAAGGTATGTTGTGTGCACTTCACTTCTACGGAAAATGTTTCATTCCTCTTTTTGTTTTCAAAACCATTTTGTTTACTTGAATATTGAATTTCTATCACCAGGACTTCGGGGAGGATCACGAGGCACTCCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTTTCTCAATGGTGTCTGTTGGTGTCACTAAGAAAGTTTTTGATCTTTAGTTGTGTTTAGGTTGGTTCCCTATTGCTGCTGAACACGTCTTTGCCCTATAATGTTTTTCCTTGTTTATTGATTAGAAAGATTTCCGGCAAACAGAACACAATTTATTTATCAAGAGTCTCCTTGCCAAGGGTAAAAGGGAATTGAATTTTATCATCTCTTTATGTTGAGTTATTAAGATTACCTATTTTCGTTCTTTTTTTTGGAGATTAATGCAACAGTCTTCCGTAGTTTTTTTCCCTATAAAACTCAATGTGTATCATGCTTGAAGTGTTGTGTGGGGAAGGTTCTAATTTCTAATTGGTTTCTAAATGTTAACTTTCCATATTGGAGTCTTATAATGAGTGGAAAAGGTCTATAACTTTGTGTTGAGAAGCGTTTGGGGATTTGAGGATTTAGTATTTGTTCTGAGCACTATCAAAACATTTTTATTTTTAAGGTCGTCCCTTAAAAGGAGAAATTTATGGATGAACCTTCGAAAAACATTTTTATTTTTAAGGTCGTCTCTTAAATGGAGAAATTTATGGATGAACCTTCGAAAAATAACATTCATATTCTCTCAACGATACAGAGAACATTAACTTTCATTACACATAATATTAGTTGTGTTATGAGATCGATTGAGATTCATTTATATTTAGATGTTTGATAATTTGAAGATAAGAGATAGGCATCGTTTATGTATTTGACGAATAGGTTTTTAATCTTTTGCGGAAAGGCAGGGAAGGAATTTGAACTTAGTTGGCTGTCAAGGACTTGCATAGGGTGCCTTTGTTTCTTCAGATCAAATCATAAGTTAAATTGCAAACATGCCAATTTGTAATTGTAATGTCAAAGGACAAGGTAATAAACCATTGATGCAATGATATCGGGGAAGTTAAATGTTGAGAAAGATACATCTTAAAGCATACGTCTTTGCCAAAGTGAGCATAACTTAACGATAACTGTACTCTCGACCAAGATGTCAGAGGTTTGAATCTCTCATTTCTAAATGTTTATGTACTCGAAAACAAAAAAAAAAAACATACACTTCAGCAATTTCAAGATTTGCTGCTTAAAAAAAGGAAAGAAACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAAGAAAATTAATGATAACAAATCACATCCACACCACAACCATTCACTTTTAAAAAATGTGTTTGACTAAAATTTTGACTGATTTTATCCTTTTTATGACAAAAATGCCTTTGAATGTTTAGAAAACAATCCAACTTCCTCTCTCTTTTATGGTTCACAAAATATACTTCATTTGGTATTGGGTAGATTTTTTTTTTCTCCATTTTTTGTTTTCCAGAAGTTCTTTTTACATGAGAATCATTGTGGGCAGGTCAATGTAACAAGTAAAAATAAAATAAAAAACTTCAAACCTTACAATAGCTCAATTGGCATAAAGTTGTACTAATGATTGAGAGGTTTGTGATTTGAATTCTCCACCCCCACATATTGTTAAAAAAAAAAAAAAAAAAGTACGGTAGCTCCCTATCCAAAATATTAAAATCCTAAGGCCTTTTTTCTAAAGAAAATATATTTTCTTTATGTATAAAGTTTAATTATTTTTTCACCTCTCCACCTTTTCTGGTTGTTATAAAATCAACTAGAAGGGGAATCAACTATGGTTTGAGTTTACTTTGTTGTTTGAAGACTTGTCTGGTGGTTAATTTAAAGAGTATTTGTGCAGTTGTGCTAGTGAGTGGAGCTTTTGAGACTGTTAGTTGGGTGTTTGAATATAATTCTTCACATGGCTTTGCTGAACTCTGAAAAATCACTCAACCCACCTCCATGCCCAACCCAAATTTCTGTGTTGGTCAAGTTCCATTCAAGTCATAGGCATAGCCCAAGCTGTTGCAATGAATTGAATGCTTCAAGACACAGTGGACAGTGCATTACATGAAGATTGAAATAAATAAATAAAACCTCCATGTGATTTGCTTATAATGAAAGAGCCAATTGTTGCATCCCTGGGCCCTGATGTCTGAGTTGGCTAATACCATTGGCTCCTATTGGTCCTTACCTAGTACATCGAGCCTCTCGGTTAGGAAATTTGACGGTGGCTCGAACCATCTTTTTACCTTCTGAATACCACAACATTGCCAATTTGATTTTACTACCTTTTCCATCGTGAAATTCTAATCATTTGGGATATTAGTTGAAGTGTGTGTCAACTGGTCTGAACACTCTCGAATATTGTAAAAAAAGAATGATAGATCTTTCTCCGAGTATTAAGTTAATGGTTGGAGGGCTTATTTGCTCTTATGGCAATATACCATTTTCAAATTTCAACATAAGATCCATTCATATCAACTGTGTGAAGAATTGATACTTAGAAAGGGATAGCTTGGACATAAAGAAAAGAAAGAATATAAAATCATCTTGGAATGTGGGAGGTTTTTGTAAGATAATTTTTTATTGGTATTGCTCTAATTTGTATACAAATCAATGTACAATGATGTTCTACTTTGATACTCTACACAAAAATGAAAAGAGAAGTTGGTAAAATTGTTCCACTCTCTCTTTTGGTGGGAAGTTGTAGCTTTTGTTGCTCTATCTTTCATGAAGTATGCAATCTTGAAGTGAGATCAATGAAGGCATCTTCCTTGCAAGGAATTGTCAAACCCCCAGTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAAACTTAGAAATGAAGGATGATTCAAGTACGATATTGGCACCACGAACCGTTTCCGTTGGATCTCTCCCACGTAGACTGCAATGTGGCCTTTGGGAATGTCGGACTGACATCTTGTTGAAATAGACTGCATTCTGAAAATTTGCTTGGCATTAAGGAGAATCGAAGGCAGACGAATTCCCATGTCTCTGTATTTGATTTAGGTGAGTTTGAATGGTTTTGCTCTGAGATATGAATTTAGAAGTGAGAAGTTGCAGAACTTGAATGAGAATTTGTTGATATTTGGTGTGGATTTATAGAATGCAAATGGAGCGGAGATGGATGTTAAAGAAGACCCACTTCATCAAATGTTCACATGGGATTGCTCTATTGGTCTGAAGCACACTCATTTCAATATGGACCAACTGTTCATTTCTCTATGCCCCATATTTTGGTGGGTAGACCCCTCTTGTTTCAAGAAAAGGAAGGCATAGTCCAAACAAGTGGCCAAGGAAATTTCAAAACTAAATGGCAGATCTGTTTGACAAGCTGTCCAATCCTCAACAAGTTACTGTTTCAATGGACCCAATGCAATGGCTGAGAATAGACTAATGAATAGTGAAAATAGGCCCGGATTTCAGTCGAAAAATCAGACAGCTCCACATCTCGTCAGCGTGCGAGTCATAAAAGATGTTGTAGTTTCATCAGCATAGGGTACATGGTGTCTGTTGATGTTTATATTTGAAGAATTTGGCATTCAAAGATTTTTATTATCTATGATCGAGTAGAGAAATCGGCATGATCTCGTGATTGTTTTCCTTGACTTTTCTAAGTTGATTAACGAAACAAACCATGATATTCTAGGTACAACCCTGGCCCTCTTCACTACCTGGTTGGGTATGCTAATTCTCTTTCTGTTCTTAATATCCCAATTGTAATAAGGAGCTACAAGATTCAGTTATTGAGTTCTTAA

mRNA sequence

ATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCTAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTTTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTAGTCAAGGCACTTTGTGCTGAGCATAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCTGGTAATGCAAATGGAGCGGAGATGGATGTTAAAGAAGACCCACTTCATCAAATGTTCACATGGGATTGCTCTATTGGTCTGAAGCACACTCATTTCAATATGGACCAACTGTTCATTTCTCTATGCCCCATATTTTGGTACAACCCTGGCCCTCTTCACTACCTGGTTGGGTATGCTAATTCTCTTTCTGTTCTTAATATCCCAATTGTAATAAGGAGCTACAAGATTCAGTTATTGAGTTCTTAA

Coding sequence (CDS)

ATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCTAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTTTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTAGTCAAGGCACTTTGTGCTGAGCATAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCTGGTAATGCAAATGGAGCGGAGATGGATGTTAAAGAAGACCCACTTCATCAAATGTTCACATGGGATTGCTCTATTGGTCTGAAGCACACTCATTTCAATATGGACCAACTGTTCATTTCTCTATGCCCCATATTTTGGTACAACCCTGGCCCTCTTCACTACCTGGTTGGGTATGCTAATTCTCTTTCTGTTCTTAATATCCCAATTGTAATAAGGAGCTACAAGATTCAGTTATTGAGTTCTTAA

Protein sequence

MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGNANGAEMDVKEDPLHQMFTWDCSIGLKHTHFNMDQLFISLCPIFWYNPGPLHYLVGYANSLSVLNIPIVIRSYKIQLLSS

Homology

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-31
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDYVKLVKALCAE
Sbjct: 24  MDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAE 83

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           HNV+L+TVPSAKTLGEWAG
Sbjct: 84  HNVHLVTVPSAKTLGEWAG 102

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           H++ L+TVPSAKTLGEWAG
Sbjct: 85  HSIKLLTVPSAKTLGEWAG 103

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           H V L+TVPSAKTLGEWAG
Sbjct: 85  HEVRLLTVPSAKTLGEWAG 103

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-20
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAE
Sbjct: 12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          H +NL+ V   K LGEW G
Sbjct: 72 HQINLIKVDDNKKLGEWVG 90

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy Swiss-Prot
Match: P84175 (40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-20
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAE
Sbjct: 12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          H +NL+ V   K LGEW G
Sbjct: 72 HQINLIKVDDNKKLGEWVG 90

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy TrEMBL
Match: A0A6J1JGV5 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. NCBI nr
Match: KAG6571063.1 (40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 68  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 127

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           HNVNLMTVPSAKTLGEWAG
Sbjct: 128 HNVNLMTVPSAKTLGEWAG 146

[Close]

BLAST of Lcy07g009460.1 vs. NCBI nr
Match: XP_038901505.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
          MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21 MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61 HNVNLMTVPSAKTLGEWAG 80
          HNVNLMTVPSAKTLGEWAG
Sbjct: 81 HNVNLMTVPSAKTLGEWAG 99

[Close]

BLAST of Lcy07g009460.1 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           H++ L+TVPSAKTLGEWAG
Sbjct: 85  HSIKLLTVPSAKTLGEWAG 103

[Close]

BLAST of Lcy07g009460.1 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           H++ L+TVPSAKTLGEWAG
Sbjct: 85  HSIKLLTVPSAKTLGEWAG 103

[Close]

BLAST of Lcy07g009460.1 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           H++ L+TVPSAKTLGEWAG
Sbjct: 85  HSIKLLTVPSAKTLGEWAG 103

[Close]

BLAST of Lcy07g009460.1 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 127.9 bits (320), Expect = 7.4e-30
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           H V L+TVPSAKTLGEWAG
Sbjct: 85  HEVRLLTVPSAKTLGEWAG 103

[Close]

BLAST of Lcy07g009460.1 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 127.9 bits (320), Expect = 7.4e-30
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAG 80
           H V L+TVPSAKTLGEWAG
Sbjct: 85  HEVRLLTVPSAKTLGEWAG 103

The following BLAST results are available for this feature:

BLAST of Lcy07g009460.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	1.0e-31	82.28	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	1.5e-30	78.48	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	1.0e-28	77.22	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	1.0e-20	58.23	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P84175	1.0e-20	58.23	40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2	[more]

BLAST of Lcy07g009460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQC3	1.4e-36	100.00	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=...	[more]
A0A5D3BJY5	1.4e-36	100.00	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JGV5	1.4e-36	100.00	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1	[more]
A0A6J1JWC7	1.4e-36	100.00	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1	[more]
A0A0A0LM61	1.4e-36	100.00	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]

BLAST of Lcy07g009460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512603.1	2.9e-36	100.00	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
XP_038896811.1	2.9e-36	100.00	40S ribosomal protein S12-like [Benincasa hispida]	[more]
KAG6571063.1	2.9e-36	100.00	40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038901505.1	2.9e-36	100.00	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022954225.1	2.9e-36	100.00	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]

BLAST of Lcy07g009460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	1.0e-31	78.48	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	1.0e-31	78.48	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	1.0e-31	78.48	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	7.4e-30	77.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	7.4e-30	77.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 65..86 score: 37.19 coord: 10..23 score: 54.55 coord: 24..40 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 1..81
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 6..24
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 6..82 e-value: 2.3E-23 score: 81.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..96 e-value: 1.3E-34 score: 120.4
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 1..80
None	No IPR available	PANTHER	PTHR11843:SF14	40S RIBOSOMAL PROTEIN S12	coord: 1..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy07g009460	Lcy07g009460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g009460.1.exon3	Lcy07g009460.1.exon3	exon
Lcy07g009460.1.exon2	Lcy07g009460.1.exon2	exon
Lcy07g009460.1.exon1	Lcy07g009460.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g009460.1.cds3	Lcy07g009460.1.cds3	CDS
Lcy07g009460.1.cds2	Lcy07g009460.1.cds2	CDS
Lcy07g009460.1.cds1	Lcy07g009460.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy07g009460.1	Lcy07g009460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome