Lcy06g021420.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy06g021420.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr06: 46463405 .. 46466445 (-)
Sequence length	563
RNA-Seq Expression	Lcy06g021420.1
Synteny	Lcy06g021420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGAATCGTGTTCGGCGATGGTGTCCAAGCGGGGAGAATTGGAGGTTCTGGTGGGAGAGATGAGAGGCGGAGGAGCGACCTCGATCCAGGAAGTGGGATTTGCGAGGGTTTTGGCCATGGAAGCGAATGGAAGAAGAGGAAATCTATGGAGTGGGAGTGAGAAGAGAAGGGGGGAATGGAGGAGAAGATTTATAGAGGAAAGGAGGAAATGGGAAGGAAGGTGAAGGCTGAAGGTAAAAGCCAAAGACACGAGAGAAATTTGATTTTGAAGGAAAACGCGGAGAAATTTTGAAAACGACGAAATACCCACCTACTCCTCACATCCACCAACCTACGCTTACTTCTTTGGATTTTATTCCACATTCAAGTTTTTTTCCTTTTTTTTTTTCCTTCTTATTTAAATTCGACTTCCTATTTTTGCTCGGTAGACGTGACTCGTGAGTATAGTTCATCTGGTTAAGGTTTTGATTCAATTGAACTTGACTTCGAGTTCAAGTTTGACTCAAAATCTAATTTTGTTCTTTCTTTTTTCTAATTCATTCCAAGTCCAAAAACTTTATTAAAAAATATAAACATAAAGGAGATTAGTCACATATATTTTGTTGCTTTTTTTCATATTTTTCATCTAGGGTTGTTCATGAGACAAGAGGGAGATCAAGATGGCTTCCCTGTCTCTGTCCCCTATTTAATTCTTTTAACGGATGTTGGTTGGATTTTTGTAGGAAATTGTTTCCTATTTAGTTTTCTAAAACAAAATTCAATTACTTTATTTTTTTTAAAACAAACTTTCAAATAAATAGTTAATTCTCTACCATGGATCCTTATTTAAATAGTTAATTTCTCATGAAAAATAAAAATTTTTGGATATCTTAAAAGAAACAAATTGATATTTTATATTAAATTATTTAATTATCCATACATAAGAGTTCGCAATGGTTAATCATGTTAAATTATCCATGCAATGAATACCATAATGGTACATAACAATGTATCATCAATTTAAGAGATTTTTTTTTTAAAAAAAAATTGTTATCTTCGATTCATTTAATAAAATGAATTCAATGAATTTCTATTTGATAGATTTATTTTTCAAAAACAATATTTGAATCCTACTTAGATGATAGATTACATGGTCCATAATTTCCTACCGTAAATTTACACTCAAAAGTACAAAATGCAATTTTGTTTTCCTTATAAATCTCATTTTCAAATTTCTAACTATAAATCATCAACTATATGCACTGAATGTTCACAAATATTTATATTTTGTTTTCTATTTAAATCTCTTCTTTTTTAAAATAAATCAACAACATTTTATCATTCAAGCCTTTAAACTCTTAATTGTTGGCACATGTCAATTACCACTGAACTATACTCACTTTCACGGATTGGATTAAAAAAGAGCTTTCTCCCTCGTTTTCAGTTTTTTTCTACTTTTTTTTAGTTGAAGATAGTTGAAGATTAATAAACTAATGAAATGAAAAGCTCATGAATGAAACTAATAACCCTCGCTAGCCTTCACTCATCCACTTCAGACATAACTTAAACCTTATATGATCCTAAGTTCTTAATGTATAGGCCTGGTTTATTGGTTTGTATCATTAAACAAATAGCATTGTTAACGAAGATTGCCTAACTTTTAAATTTATCTACAAATCTCTTTTTTTTTTATGTCCATGAGTGTCTGGTCCAGCTTATGTGCACCACACGAGACAATTGTTTAACCCTACTACATTTGGTTGCCAATGAAACTCGCAGGATATTGAATCCTAGGTAGGTAAGTGGTCATCATGGATTGAATTCATTCATCTACAAATCTCCCTCTCTAAACTATGAAAGGAAACGAAGAAAAAGAAAAGCAAAAATGAATTCATATTAGTTCTTTAAACTACAGAAATTTGAACCATTAAATAACGTTATAATTCAAATATGATCTTTTCACGAACATCCATTTGAAGAAATTAATATAACAATGAGTTGTGATACTAATACATATAATCAGTTTGACACTATTGGCATTTTTCTTCCAAATGACAAACCAATCCAATCACTAGAATCATAACACAATTAGGTGGAGAAGAAAATAAAATAACTATTAGCCTACAATGAACCACCACAAGGAAGATCAAAGTTAAGATGTTGGTGGGGCAAATGAAGTAGCTTGAAAGTTCATGTAATTAAAAACATCACAACCTTTATCCTTGTCCCTTCTCTTTTATGGCACTCAAAATTAAAATGAATCTTCTTTGCCCTAAGCTCAAAGTTTCAGGACTTGTTCTAGAAATTCTACGGTTGATTCTGATAACTTATATCTTATCTTAAAGAAAAAAACAAAGGAGAGGTAAGAAAAAGATACTTCATTAACAAAGATTAGCTTCCATCCAAACTCCCAATTTTCCAGGCTTGTTCTAGAATTCTAGTGTTGAATCAGAAAACAACCTTGCCTTAAGAAGAAATACAACTTCATTAACAAGGATCATGATCTAGGCTGGTTCAGAAGAGATAACAGGCAAACATCAGAGAGCCACTTAAAAGTAGTACAGGATTCTAGCATCAAACACAGGCAAGAAATAGCTCCTCCCTGGTGAATACATGTCAGTAAGAAAGAAATGGGTATGATTTGAATTTTCACAGAAGGCTACATATCATCTTCATGTTTGGCTATTCAAGTCCCATGTCGGGGCTTAGGGCGATGAGGGGGCCTTTTCTTGCAAGGACATCACAGGAGCTACAGCAACTAATATACAAAGGCCTAATTGAATTCCTTGAACCAATTGTTCAGAAGACTATAGCTAATGAATCAAAGTCTTCAAAACAAAACTATTTTAGAGGACTTATGTCTACTGGGAAATTTAAAAAAGGACACAATTTCACTGACCTAGAGAAAAAAGGTTACGCCATGTATATAATGCGCTAGCATTATTTGAAGTTAAGATCAATGCAAATTTCAGAATCCTCTTCCAAACCATATATCATATTCTATACAAACCACCATTCCTAGATGAAAGAATCACATGAAAAGTACCTTAAAATGAC

mRNA sequence

ATGTTCGGAATCGTGTTCGGCGATGGTGTCCAAGCGGGGAGAATTGGAGGTTCTGGTGGGAGAGATGAGAGGCGGAGGAGCGACCTCGATCCAGGAAGTGGGATTTGCGAGGGTTTTGGCCATGGAAGCGAATGGAAGAAGAGGAAATCTATGGAGTGGGAAAGGCTACATATCATCTTCATGTTTGGCTATTCAAGTCCCATGTCGGGGCTTAGGGCGATGAGGGGGCCTTTTCTTGCAAGGACATCACAGGAGCTACAGCAACTAATATACAAAGGCCTAATTGAATTCCTTGAACCAATTGTTCAGAAGACTATAGCTAATGAATCAAAGTCTTCAAAACAAAACTATTTTAGAGGACTTATGTCTACTGGGAAATTTAAAAAAGGACACAATTTCACTGACCTAGAGAAAAAAGGTTACGCCATGTATATAATGCGCTAGCATTATTTGAAGTTAAGATCAATGCAAATTTCAGAATCCTCTTCCAAACCATATATCATATTCTATACAAACCACCATTCCTAGATGAAAGAATCACATGAAAAGTACCTTAAAATGAC

Coding sequence (CDS)

ATGTTCGGAATCGTGTTCGGCGATGGTGTCCAAGCGGGGAGAATTGGAGGTTCTGGTGGGAGAGATGAGAGGCGGAGGAGCGACCTCGATCCAGGAAGTGGGATTTGCGAGGGTTTTGGCCATGGAAGCGAATGGAAGAAGAGGAAATCTATGGAGTGGGAAAGGCTACATATCATCTTCATGTTTGGCTATTCAAGTCCCATGTCGGGGCTTAGGGCGATGAGGGGGCCTTTTCTTGCAAGGACATCACAGGAGCTACAGCAACTAATATACAAAGGCCTAATTGAATTCCTTGAACCAATTGTTCAGAAGACTATAGCTAATGAATCAAAGTCTTCAAAACAAAACTATTTTAGAGGACTTATGTCTACTGGGAAATTTAAAAAAGGACACAATTTCACTGACCTAGAGAAAAAAGGTTACGCCATGTATATAATGCGCTAG

Protein sequence

MFGIVFGDGVQAGRIGGSGGRDERRRSDLDPGSGICEGFGHGSEWKKRKSMEWERLHIIFMFGYSSPMSGLRAMRGPFLARTSQELQQLIYKGLIEFLEPIVQKTIANESKSSKQNYFRGLMSTGKFKKGHNFTDLEKKGYAMYIMR

Homology

The following BLAST results are available for this feature:

BLAST of Lcy06g021420.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g021420.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g021420.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g021420.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy06g021420	Lcy06g021420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g021420.1.exon2	Lcy06g021420.1.exon2	exon
Lcy06g021420.1.exon1	Lcy06g021420.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g021420.1.utr3p1	Lcy06g021420.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g021420.1.cds2	Lcy06g021420.1.cds2	CDS
Lcy06g021420.1.cds1	Lcy06g021420.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy06g021420.1	Lcy06g021420.1-protein	polypeptide