Lcy05g003890.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy05g003890.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr05: 3481568 .. 3481822 (+)
Sequence length	255
RNA-Seq Expression	Lcy05g003890.1
Synteny	Lcy05g003890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTAGCCATTTGGAAGGAGTGCTAGCGACTGCGGCCTTGTTCGTCCTTGTACAGATTCTGGTTTATCTAATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACGCGGAGAGGTCTTTCAGTTTCAGACAGGTTCGATCTCTGAGTGTTCGTCGGATTCTGGCTGCTCTTTCCGATTTGCCCTCCGGCGGCGAGGCGTCTCCTTCTCCAAGTGAAAATCGGTCGCCGTTTCTGATCGGCGGAGAATGA

mRNA sequence

ATGGAGATTAGCCATTTGGAAGGAGTGCTAGCGACTGCGGCCTTGTTCGTCCTTGTACAGATTCTGGTTTATCTAATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACGCGGAGAGGTCTTTCAGTTTCAGACAGGTTCGATCTCTGAGTGTTCGTCGGATTCTGGCTGCTCTTTCCGATTTGCCCTCCGGCGGCGAGGCGTCTCCTTCTCCAAGTGAAAATCGGTCGCCGTTTCTGATCGGCGGAGAATGA

Coding sequence (CDS)

ATGGAGATTAGCCATTTGGAAGGAGTGCTAGCGACTGCGGCCTTGTTCGTCCTTGTACAGATTCTGGTTTATCTAATTCTCTCTAAATCTTCCGACGTCTTCTCGAAGAACGCGGAGAGGTCTTTCAGTTTCAGACAGGTTCGATCTCTGAGTGTTCGTCGGATTCTGGCTGCTCTTTCCGATTTGCCCTCCGGCGGCGAGGCGTCTCCTTCTCCAAGTGAAAATCGGTCGCCGTTTCTGATCGGCGGAGAATGA

Protein sequence

MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALSDLPSGGEASPSPSENRSPFLIGGE

Homology

[Close]

BLAST of Lcy05g003890.1 vs. ExPASy TrEMBL
Match: A0A6J1D0M4 (uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016209 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI  LEG++ATAA+F LVQILVYLILSKSSDVFSKN +RS SFR VRSLS+RRILAALS
Sbjct: 4  MEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAALS 63

Query: 61 DLPSGGEASPSPSENRSPFLIGGE 85
          D+PSGGE SP P+E+ SPF IGGE
Sbjct: 64 DVPSGGEPSP-PNESPSPFSIGGE 86

[Close]

BLAST of Lcy05g003890.1 vs. ExPASy TrEMBL
Match: A0A6J1JXQ0 (uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.9e-17
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI HLEG+  TAA+F+LVQILVYLILSKSS VFSKN +RS SFRQVRSLS+RRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DLPSGGEASPSPSENR 77
          D PSG   +  P E+R
Sbjct: 63 DFPSG---AGDPDESR 75

[Close]

BLAST of Lcy05g003890.1 vs. ExPASy TrEMBL
Match: A0A6J1GRF7 (uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC111456452 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.9e-17
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI HLEG+  TAA+F+LVQILVYLILSKSS VFSKN +RS SFRQVRSLS+RRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DLPSGGEASPSPSENR 77
          D PSG   +  P E+R
Sbjct: 63 DFPSG---TGDPDESR 75

[Close]

BLAST of Lcy05g003890.1 vs. ExPASy TrEMBL
Match: A0A218WLF6 (uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.8e-14
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKN-AERSFSFRQVRSLSVRRILAAL 60
          M+ + L  VL    +FVLVQ LVYLILSKSSDVFSK+ A++S SFR VRS+S+RR +AAL
Sbjct: 4  MDTNSLGDVLLKVGMFVLVQALVYLILSKSSDVFSKDKAKKSLSFRPVRSVSIRRFMAAL 63

Query: 61 SDLPSGGEASPSPSENRSP 79
          SD+P+GGE SPSP   RSP
Sbjct: 64 SDMPAGGEPSPSP---RSP 79

[Close]

BLAST of Lcy05g003890.1 vs. ExPASy TrEMBL
Match: A0A5C7IVL7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001707 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-13
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSK-NAERSFSFRQVRSLSVRRILAAL 60
          +E+S  E +L    +FVLVQ+LVYLILS SSD+FS+ N  RS SF+  RS+S+RRILAA+
Sbjct: 3  LELSFTEDILLKIGVFVLVQVLVYLILSNSSDIFSRNNMMRSLSFKPARSVSIRRILAAI 62

Query: 61 SDLPSGGEASPSPSENRS 78
          SD+PSGGEASP    +RS
Sbjct: 63 SDIPSGGEASPLSRGSRS 80

[Close]

BLAST of Lcy05g003890.1 vs. NCBI nr
Match: XP_022147203.1 (uncharacterized protein LOC111016209 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI  LEG++ATAA+F LVQILVYLILSKSSDVFSKN +RS SFR VRSLS+RRILAALS
Sbjct: 4  MEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAALS 63

Query: 61 DLPSGGEASPSPSENRSPFLIGGE 85
          D+PSGGE SP P+E+ SPF IGGE
Sbjct: 64 DVPSGGEPSP-PNESPSPFSIGGE 86

[Close]

BLAST of Lcy05g003890.1 vs. NCBI nr
Match: XP_022991948.1 (uncharacterized protein LOC111488440 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 6.1e-17
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI HLEG+  TAA+F+LVQILVYLILSKSS VFSKN +RS SFRQVRSLS+RRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DLPSGGEASPSPSENR 77
          D PSG   +  P E+R
Sbjct: 63 DFPSG---AGDPDESR 75

[Close]

BLAST of Lcy05g003890.1 vs. NCBI nr
Match: XP_022954080.1 (uncharacterized protein LOC111456452 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 6.1e-17
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI HLEG+  TAA+F+LVQILVYLILSKSS VFSKN +RS SFRQVRSLS+RRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALS 62

Query: 61 DLPSGGEASPSPSENR 77
          D PSG   +  P E+R
Sbjct: 63 DFPSG---TGDPDESR 75

[Close]

BLAST of Lcy05g003890.1 vs. NCBI nr
Match: XP_023548863.1 (uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI HLEG+  TAA+F+LVQILVYLILSKSS VFSKN +RS SFRQVRSL++RRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALS 62

Query: 61 DLPSGGEASPSPSENR 77
          D PSG   +  P E+R
Sbjct: 63 DFPSG---TGDPDESR 75

[Close]

BLAST of Lcy05g003890.1 vs. NCBI nr
Match: KAG6575656.1 (hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014206.1 hypothetical protein SDJN02_24381, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MEISHLEGVLATAALFVLVQILVYLILSKSSDVFSKNAERSFSFRQVRSLSVRRILAALS 60
          MEI HLEG+  TAA+F+LVQILVYLILSKSS VFSKN +RS SFRQVRSL++RRI+AALS
Sbjct: 3  MEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALS 62

Query: 61 DLPSGGEASPSPSENR 77
          D PSG      P E+R
Sbjct: 63 DFPSG---DGDPDESR 75

[Close]

BLAST of Lcy05g003890.1 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-14
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 7  EGVLATAALFVLVQILVYLILSKSSDVF--SKNAERSFSFRQVRSLSVRRILAALSDLPS 66
          EG+L   ++F L+Q LVYLILSKSS VF  SK  +R++SFR  RS+S+RRILA L D+P+
Sbjct: 6  EGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPA 65

Query: 67 GGEASPS 72
          GGE SPS
Sbjct: 66 GGEMSPS 72

[Close]

BLAST of Lcy05g003890.1 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 9  VLATAALFVLVQILVYLILSKSSDVF--SKNAERSFSFRQVRSLSVRRILAALSDLPSGG 68
          +L   ALF LVQ LVYLIL KSS VF  S + +R++SFR +RS+S+RRILAAL D+P+G 
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 69 EASPSPSENRS 78
          + SPS + + S
Sbjct: 68 DMSPSSNGSSS 78

[Close]

BLAST of Lcy05g003890.1 vs. TAIR 10
Match: AT1G55207.1 (unknown protein; LOCATED IN: endomembrane system. )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 9  VLATAALFVLVQILVYLILSKSSDVFS-----KNAERSFSFRQVRSLSVRRILAALSD 62
          +L  AA+FV++Q L +LI+S SSD+FS     K  +RSF F+  RS+S   + A +SD
Sbjct: 7  ILTNAAIFVIIQALAFLIISTSSDIFSSKIKMKTKKRSFGFKLSRSIS--HLFALISD 62

The following BLAST results are available for this feature:

BLAST of Lcy05g003890.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g003890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0M4	1.2e-23	78.57	uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1JXQ0	2.9e-17	72.37	uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440...	[more]
A0A6J1GRF7	2.9e-17	72.37	uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A218WLF6	8.8e-14	64.56	uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835...	[more]
A0A5C7IVL7	2.0e-13	60.26	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001707 PE=4 SV=1	[more]

BLAST of Lcy05g003890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147203.1	2.5e-23	78.57	uncharacterized protein LOC111016209 [Momordica charantia]	[more]
XP_022991948.1	6.1e-17	72.37	uncharacterized protein LOC111488440 [Cucurbita maxima]	[more]
XP_022954080.1	6.1e-17	72.37	uncharacterized protein LOC111456452 [Cucurbita moschata]	[more]
XP_023548863.1	1.4e-16	71.05	uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]	[more]
KAG6575656.1	1.8e-16	71.05	hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy05g003890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	1.8e-14	61.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	1.4e-11	56.34	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55207.1	1.7e-04	44.83	unknown protein; LOCATED IN: endomembrane system.	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..84
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 4..74
None	No IPR available	PANTHER	PTHR34268:SF13	SUBFAMILY NOT NAMED	coord: 4..74
IPR014010	REJ domain	PROSITE	PS51111	REJ	coord: 1..84 score: 8.652596

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy05g003890	Lcy05g003890	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy05g003890.1.exon1	Lcy05g003890.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy05g003890.1.cds1	Lcy05g003890.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy05g003890.1	Lcy05g003890.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane