Lcy03g019250.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy03g019250.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	cytochrome c oxidase assembly factor 6
Location	Chr03: 52820583 .. 52823190 (+)
Sequence length	947
RNA-Seq Expression	Lcy03g019250.1
Synteny	Lcy03g019250.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACTACTTGGGCCCAAATCTGAAGGCTGAAGCTGCCGAGCGAAATTGGGACGACGGAAAACCCCAGCTGCGAAAGAAACCAAGCAGCCATAGCAGCTTCGTCTCTGTAGGAACTATGGCTGTCGAAGTCGACGCGTCAGGAGGCTTAGATGAAGTTCACAGCGACGTTCTTGCGGAATCCAGACAAGCTTGCTACAAGGTTTTCTCCCTCAATCACTTATTCTTTACGATTTCTGTTTGATAAGAATGCTCGAGTGTTAATATGGCAATTTGATGCATCTGAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTAAATGCCATTTCCCGATCACTTGAGATTTCAATAACATGTTTGCTCTTAGAATTTGTGGTCTATTAGATTTTTGATTTCTTGTGTTTATGATTTGGTTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGATACTTCCGCAGCCTTACACTTTTAAGCCCACTAATTGAACTAAACACCAACTTCCCTGCGGAACAACATTGAGCGGTCAGAGTTTTATGACTATCGTTATTTCTTTATTGTTCTTCCTTTACTTTGTATAGAGATAACTGTGGCAATAGCCAATAGGTTTCATAATAATGTCAATTCTCTTCCCAACTCACAAAAGCCTATTCCCTCCCTTTTTCTTATTTATGATTTTTTTTTTGTTTTTTTTTTGTTTTTTTTATAATTTCAAGATATGGTAGATCTATGGCCAATATGACAATTGACACGACCATGATGTACTAACTGAACATAAAAGGCCCTAAAAATATGTGAGTTTTTATCTCATGAAAATTACTTAGTTTCACTGTCCCTTGTATGTTAGTCATGGTCTTGGTAGTTGATTCACACTATTTGGATGCTTGGATAGTTTGTAGAATTACTACTATTACTTAGTTGGTACTTGGTAGTCATGGTCTTAGTTTGAACATATTGAACTATTGACTGCATAACTTTTTTAATGTAGGAAGGTTAGTTGTTAATGAACGTATTTGCTGGGTCATGATATGAGAGTTGTTTTAGGCTCCTGTATAGTAATGACCTCTTGATCACAACATGAATGGGGGAATTTGGCTGAATGCATAAGGAGTAGAAGGAAGTTGGTTTTAGCATTTAGGAACATCTATTCAACTCTATTAAGTGATATCTTATAGACTTGGAAGCTTAAGTGTGAATCATCCATTCTCATGGACACACCACCTGTTTTTGCTTTTAGGTGCATTGCATTAGTCATGCGACTCTACGCCTTTTCAGCAGTAAATTGCCCCTTCTAGACCTTACTAAAAATTCTATAATCCTTGATCATTCTCTTTGCATATGCATGTATAAATACCCCAGAGAAAGCAGGAAAAAGAAAAGAATTTTTTTGGGGGGTTAAATACCCAAGAGATTTGAGCTTAGTTTTTATTTGGTCCTTGTGTTTTCAAAACCAACATTTTTAGTCATTGAGATTTGAGTTTAGTTCCTATTTGGTCCTTGAGGTTTCAAAAGTGACATCTTCATCCTTTGAGTTTTGAATTTGATTTCTAATTAGTCCTTGAAGCTTGAAATTGGGTTCTAAATAGAAACTAAATTCAAATCTCAAAGACCAAATAGAAACTAAGTTAAAATTTGAAGGACCAAATGTGTATTTTGCTCTTTGTTTTTTTGGCAATCGCTTCCATGATGTAAATTCAAATCTTAAGGACTAAATATGAACTAAATTTAAATCTCAAGGACCAAAAGTGTTTAGTTTTGAAAACCTAGAGTCCAAATAGAAGCTAAGTTCAAATTCCAAGGACCAATGGTTTATTCTACCCTTTTTGTTTTGTGGGAATTGCTTCTATAAGGTAAACTCAAATCTTAAGGACCAAATAGGAATTAAATTTAAATCTTAAGGACCAAAAGTGTTAGATTTGAAAACTCAGAGTCCAAATAGAAGCTAAGTTCAAAGTCCAAGGTGTGCTAAGTTCAAAATCCAAGGACCAACCATGTATTCTACCCTTTTTGTTTTGTGGGAATTGCTTCTATAAGGTAAATTCAAAATTTAAGGACCAAATAGAAACTGAATTCAAATCTCAAGAACTAAAAGTGTTAGTTTTGAAAAGCTCATAGATCAAATAGAAACTAAGTTCAAACTGTAAGGACCAAAAGTGTATTTTATCCCTTGCTTCTAGGAGGTATTTATAAGCAGGACAAGATTCAAAGAGAAATCCCAAGTTATTAAATTCCTCTCTCTTAACTGCTGCTTTTATGTGCAGAACTGGTGAGGAATCCCAAGATCATTTCTTCATTGCTTGCCCTATGGCCAATATTCCTTTTTTTTTTTCCAGAAATTTTATCAATCAATGAAATTGATTGTCGTACCATAAAAAGGGGTTGTAAGTACTGAAAGTCTATATCTGTTCTTCAATTGCTTTGTGAGGAAGACAGGATGGAAA

mRNA sequence

CCAACTACTTGGGCCCAAATCTGAAGGCTGAAGCTGCCGAGCGAAATTGGGACGACGGAAAACCCCAGCTGCGAAAGAAACCAAGCAGCCATAGCAGCTTCGTCTCTGTAGGAACTATGGCTGTCGAAGTCGACGCGTCAGGAGGCTTAGATGAAGTTCACAGCGACGTTCTTGCGGAATCCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGATACTTCCGCAGCCTTACACTTTTAAGCCCACTAATTGAACTAAACACCAACTTCCCTGCGGAACAACATTGAGCGGTCAGAGTTTTATGACTATCGTTATTTCTTTATTGTTCTTCCTTTACTTTGTATAGAGATAACTGTGGCAATAGCCAATAGGTTTCATAATAATGTCAATTCTCTTCCCAACTCACAAAAGCCTATTCCCTCCCTTTTTCTTATTTATGATTTTTTTTTTGTTTTTTTTTTGTTTTTTTTATAATTTCAAGATATGGTAGATCTATGGCCAATATGACAATTGACACGACCATGATGTACTAACTGAACATAAAAGGCCCTAAAAATATAACTGGTGAGGAATCCCAAGATCATTTCTTCATTGCTTGCCCTATGGCCAATATTCCTTTTTTTTTTTCCAGAAATTTTATCAATCAATGAAATTGATTGTCGTACCATAAAAAGGGGTTGTAAGTACTGAAAGTCTATATCTGTTCTTCAATTGCTTTGTGAGGAAGACAGGATGGAAA

Coding sequence (CDS)

ATGGCTGTCGAAGTCGACGCGTCAGGAGGCTTAGATGAAGTTCACAGCGACGTTCTTGCGGAATCCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGATACTTCCGCAGCCTTACACTTTTAAGCCCACTAATTGA

Protein sequence

MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN

Homology

[Close]

BLAST of Lcy03g019250.1 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.6e-56
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVE DASGGLDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPT+
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of Lcy03g019250.1 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVE D+SGG DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Lcy03g019250.1 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVE D+SGG DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Lcy03g019250.1 vs. ExPASy TrEMBL
Match: A0A0A0LTX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.0e-54
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA E D+SGG DEVH+DVL+ESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Lcy03g019250.1 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+E D SGG +EVH+DVLAE RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPT+
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Lcy03g019250.1 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 2.8e-57
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVE DASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Lcy03g019250.1 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 227.6 bits (579), Expect = 5.3e-56
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVE DASGGLDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPT+
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of Lcy03g019250.1 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 5.8e-55
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVE D+SGG DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Lcy03g019250.1 vs. NCBI nr
Match: XP_011655945.1 (uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 1.4e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA E D+SGG DEVH+DVL+ESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Lcy03g019250.1 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+E D SGG +EVH+DVLAE RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPT+
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Lcy03g019250.1 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-42
Identity = 76/113 (67.26%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  AS   ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT 114
             R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of Lcy03g019250.1 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-42
Identity = 76/113 (67.26%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEVDASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  AS   ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT 114
             R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of Lcy03g019250.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g019250.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	2.6e-56	96.49	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S3B9T5	2.8e-55	92.98	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	2.8e-55	92.98	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LTX1	7.0e-54	90.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1	[more]
A0A6J1I7I2	1.2e-53	90.35	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]

BLAST of Lcy03g019250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878579.1	2.8e-57	98.25	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_022134674.1	5.3e-56	96.49	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_008443871.1	5.8e-55	92.98	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_011655945.1	1.4e-53	90.35	uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus]	[more]
XP_022973432.1	2.5e-53	90.35	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]

BLAST of Lcy03g019250.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	1.6e-42	67.26	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	1.6e-42	67.26	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 21..92 e-value: 1.2E-18 score: 67.1
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 18..91 e-value: 2.9E-9 score: 38.7
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 22..82
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 1..112
None	No IPR available	PANTHER	PTHR47445:SF1	OS08G0441400 PROTEIN	coord: 1..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy03g019250	Lcy03g019250	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019250.1.utr5p1	Lcy03g019250.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019250.1.exon1	Lcy03g019250.1.exon1	exon
Lcy03g019250.1.exon2	Lcy03g019250.1.exon2	exon
Lcy03g019250.1.exon3	Lcy03g019250.1.exon3	exon
Lcy03g019250.1.exon4	Lcy03g019250.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019250.1.cds1	Lcy03g019250.1.cds1	CDS
Lcy03g019250.1.cds2	Lcy03g019250.1.cds2	CDS
Lcy03g019250.1.cds3	Lcy03g019250.1.cds3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019250.1.utr3p1	Lcy03g019250.1.utr3p1	three_prime_UTR
Lcy03g019250.1.utr3p2	Lcy03g019250.1.utr3p2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy03g019250.1	Lcy03g019250.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV