Lcy03g019110.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy03g019110.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein sumv-1 like
Location	Chr03: 52685916 .. 52686526 (+)
Sequence length	611
RNA-Seq Expression	Lcy03g019110.1
Synteny	Lcy03g019110.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAATGGCTGGTTTCCAGGCATTTGACAACAAAACAACCCAACTTCAACTGCCATCATCTGCAAACAACTGACACTTGTTCAATCCAATTCCACACATCCATCGCCGATTCCCCTTTTTCTCACCATCGCCATCGCCCCTCTTTGCCCTAATCCCAAATCTCGCAAACGAATTTCTTCACCGCAGCAAAAGAAGAGAGTTCCGAGAAAGAAAATAGAAAAAAAACAGAGGAAGAGCAGAGCGTGGTCAATGGCAGGATCACAGCAAATGAAGGGCCCGTCACCGGCTGAGCAGAGCACCGAGGTTCTTCACCAGCGGAAGAAACTGCCGGTCTGTCCGATGAGAATGGCGATCGGCGGTTTCGCCATCGCCGCGACGCTCGGTTACTTCGTCCTGTACTCGAAGAAGAAGCCGGAGGCTTCCGCGCTTGATGTCGCCAAAGTCACCGTCGGTATGTCCACTCCGGAGAACACCCGTCCTCGCATGTAGAAATTTACAGAATGGCGCTATACCTGTAGTCTTCTTCTTCAAAAGAATTGTTTTGTTTTCATCATGCTCTTTCTTCCTCGAGTTTTTGATACGATGATATAAATCATATAATGTAATGCGT

mRNA sequence

GTCCAATGGCTGGTTTCCAGGCATTTGACAACAAAACAACCCAACTTCAACTGCCATCATCTGCAAACAACTGACACTTGTTCAATCCAATTCCACACATCCATCGCCGATTCCCCTTTTTCTCACCATCGCCATCGCCCCTCTTTGCCCTAATCCCAAATCTCGCAAACGAATTTCTTCACCGCAGCAAAAGAAGAGAGTTCCGAGAAAGAAAATAGAAAAAAAACAGAGGAAGAGCAGAGCGTGGTCAATGGCAGGATCACAGCAAATGAAGGGCCCGTCACCGGCTGAGCAGAGCACCGAGGTTCTTCACCAGCGGAAGAAACTGCCGGTCTGTCCGATGAGAATGGCGATCGGCGGTTTCGCCATCGCCGCGACGCTCGGTTACTTCGTCCTGTACTCGAAGAAGAAGCCGGAGGCTTCCGCGCTTGATGTCGCCAAAGTCACCGTCGGTATGTCCACTCCGGAGAACACCCGTCCTCGCATGTAGAAATTTACAGAATGGCGCTATACCTGTAGTCTTCTTCTTCAAAAGAATTGTTTTGTTTTCATCATGCTCTTTCTTCCTCGAGTTTTTGATACGATGATATAAATCATATAATGTAATGCGT

Coding sequence (CDS)

ATGGCAGGATCACAGCAAATGAAGGGCCCGTCACCGGCTGAGCAGAGCACCGAGGTTCTTCACCAGCGGAAGAAACTGCCGGTCTGTCCGATGAGAATGGCGATCGGCGGTTTCGCCATCGCCGCGACGCTCGGTTACTTCGTCCTGTACTCGAAGAAGAAGCCGGAGGCTTCCGCGCTTGATGTCGCCAAAGTCACCGTCGGTATGTCCACTCCGGAGAACACCCGTCCTCGCATGTAG

Protein sequence

MAGSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTVGMSTPENTRPRM

Homology

[Close]

BLAST of Lcy03g019110.1 vs. ExPASy TrEMBL
Match: A0A5D3BA37 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00570 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 69/85 (81.18%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MAGSQQ-------MKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKK 60
          M GSQQ       MKGPSPA+ +TEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLY+KK
Sbjct: 1  MTGSQQVNATGDRMKGPSPAQHTTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60

Query: 61 KPEASALDVAKVTVGMSTPENTRPR 79
          KPEASALDVAKVT G+STP+NT PR
Sbjct: 61 KPEASALDVAKVTTGISTPDNTHPR 85

[Close]

BLAST of Lcy03g019110.1 vs. ExPASy TrEMBL
Match: A0A6J1BZ44 (uncharacterized protein LOC111006810 OS=Momordica charantia OX=3673 GN=LOC111006810 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1   MAGSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASAL 60
           MAGSQQM GPSPA+ +TEVL QRKKLPVCPM+MA+GGF IAATLGYFVL +KKKPEASAL
Sbjct: 66  MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL 125

Query: 61  DVAKVTVGMSTPENTRPR 79
           DVAKVT G++TPENTRPR
Sbjct: 126 DVAKVTAGVATPENTRPR 143

[Close]

BLAST of Lcy03g019110.1 vs. ExPASy TrEMBL
Match: A0A5N6RUE0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020822 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 3  GSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDV 62
          G++ MKGPSP + STEVLHQR+KLP CPMRMAIGGFAI A LGY VLYSKKKPEASA DV
Sbjct: 11 GAEAMKGPSPGQHSTEVLHQRRKLPFCPMRMAIGGFAITAALGYLVLYSKKKPEASAADV 70

Query: 63 AKVTVGMSTPENTRPR 79
          AKV VG+S PENT PR
Sbjct: 71 AKVVVGVSHPENTHPR 86

[Close]

BLAST of Lcy03g019110.1 vs. ExPASy TrEMBL
Match: A0A314Y3C0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_22000 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.2e-24
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 2  AGSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALD 61
          AG+Q MKGPSPA+ STEVLHQ  KL  CPMRMA+GGFA+  T+GYF LY+KKKPEASALD
Sbjct: 11 AGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYTKKKPEASALD 70

Query: 62 VAKVTVGMSTPENTRPR 79
          VAKV  G S PENT PR
Sbjct: 71 VAKVATGFSNPENTHPR 87

[Close]

BLAST of Lcy03g019110.1 vs. ExPASy TrEMBL
Match: A0A314XVK0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32198 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.9e-24
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 2  AGSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALD 61
          AG+Q MKGPSPA+ STEVLHQ  KL  CPMRMA+GGFA+  T+GYF LY+KKKPEASALD
Sbjct: 11 AGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYTKKKPEASALD 70

Query: 62 VAKVTVGMSTPENTRPR 79
          VAKV  G S PENT PR
Sbjct: 71 VAKVVTGFSHPENTHPR 87

[Close]

BLAST of Lcy03g019110.1 vs. NCBI nr
Match: KAA0035091.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYJ95987.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28
Identity = 69/85 (81.18%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MAGSQQ-------MKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKK 60
          M GSQQ       MKGPSPA+ +TEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLY+KK
Sbjct: 1  MTGSQQVNATGDRMKGPSPAQHTTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60

Query: 61 KPEASALDVAKVTVGMSTPENTRPR 79
          KPEASALDVAKVT G+STP+NT PR
Sbjct: 61 KPEASALDVAKVTTGISTPDNTHPR 85

[Close]

BLAST of Lcy03g019110.1 vs. NCBI nr
Match: XP_022134574.1 (uncharacterized protein LOC111006810 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 7.2e-28
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1   MAGSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASAL 60
           MAGSQQM GPSPA+ +TEVL QRKKLPVCPM+MA+GGF IAATLGYFVL +KKKPEASAL
Sbjct: 66  MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL 125

Query: 61  DVAKVTVGMSTPENTRPR 79
           DVAKVT G++TPENTRPR
Sbjct: 126 DVAKVTAGVATPENTRPR 143

[Close]

BLAST of Lcy03g019110.1 vs. NCBI nr
Match: KAE8126076.1 (hypothetical protein FH972_020822 [Carpinus fangiana])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 3  GSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDV 62
          G++ MKGPSP + STEVLHQR+KLP CPMRMAIGGFAI A LGY VLYSKKKPEASA DV
Sbjct: 11 GAEAMKGPSPGQHSTEVLHQRRKLPFCPMRMAIGGFAITAALGYLVLYSKKKPEASAADV 70

Query: 63 AKVTVGMSTPENTRPR 79
          AKV VG+S PENT PR
Sbjct: 71 AKVVVGVSHPENTHPR 86

[Close]

BLAST of Lcy03g019110.1 vs. NCBI nr
Match: KAG2717864.1 (hypothetical protein I3760_03G194000 [Carya illinoinensis] >KAG6661827.1 hypothetical protein CIPAW_03G202100 [Carya illinoinensis] >KAG6723093.1 hypothetical protein I3842_03G191900 [Carya illinoinensis] >KAG7988545.1 hypothetical protein I3843_03G192100 [Carya illinoinensis])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 3  GSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDV 62
          G++ MKGPSP + STE LHQR+KLP CPMRMAIGGFAI ATL YF+LYSKKKPEASA+DV
Sbjct: 11 GAEAMKGPSPGQHSTEALHQRRKLPYCPMRMAIGGFAITATLAYFILYSKKKPEASAIDV 70

Query: 63 AKVTVGMSTPENTRPR 79
          AKV  G+S P+NT PR
Sbjct: 71 AKVATGVSHPDNTHPR 86

[Close]

BLAST of Lcy03g019110.1 vs. NCBI nr
Match: PQP98417.1 (hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 2  AGSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALD 61
          AG+Q MKGPSPA+ STEVLHQ  KL  CPMRMA+GGFA+  T+GYF LY+KKKPEASALD
Sbjct: 11 AGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYTKKKPEASALD 70

Query: 62 VAKVTVGMSTPENTRPR 79
          VAKV  G S PENT PR
Sbjct: 71 VAKVATGFSNPENTHPR 87

[Close]

BLAST of Lcy03g019110.1 vs. TAIR 10
Match: AT4G31830.1 (unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 2  AGSQQMKGPSPAEQSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALD 61
          AG +  K P P      VLHQR+ LP     MA+ G AI+  + Y V+Y+KKKPEA+A D
Sbjct: 24 AGVESSKRP-PGSNPGGVLHQRRNLPYSYTTMALAGLAISGAIMYTVMYAKKKPEATATD 83

Query: 62 VAKVTVGMSTPENTRPR 79
          VAK   G + PE+T PR
Sbjct: 84 VAKAATGTAKPEDTHPR 99

The following BLAST results are available for this feature:

BLAST of Lcy03g019110.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g019110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA37	1.2e-28	81.18	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1BZ44	3.5e-28	83.33	uncharacterized protein LOC111006810 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5N6RUE0	2.8e-25	78.95	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020822 PE=4 SV=1	[more]
A0A314Y3C0	5.2e-24	74.03	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_220...	[more]
A0A314XVK0	8.9e-24	74.03	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_321...	[more]

BLAST of Lcy03g019110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035091.1	2.5e-28	81.18	putative transmembrane protein [Cucumis melo var. makuwa] >TYJ95987.1 putative t...	[more]
XP_022134574.1	7.2e-28	83.33	uncharacterized protein LOC111006810 [Momordica charantia]	[more]
KAE8126076.1	5.7e-25	78.95	hypothetical protein FH972_020822 [Carpinus fangiana]	[more]
KAG2717864.1	1.7e-24	75.00	hypothetical protein I3760_03G194000 [Carya illinoinensis] >KAG6661827.1 hypothe...	[more]
PQP98417.1	1.1e-23	74.03	hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Lcy03g019110.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31830.1	1.6e-12	48.05	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PANTHER	PTHR33919:SF7	BNACNNG59810D PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 1..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy03g019110	Lcy03g019110	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019110.1.utr5p1	Lcy03g019110.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019110.1.exon1	Lcy03g019110.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019110.1.cds1	Lcy03g019110.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g019110.1.utr3p1	Lcy03g019110.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy03g019110.1	Lcy03g019110.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane