Lcy01g005680.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy01g005680.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein cornichon 4-like
Location	Chr01: 7920969 .. 7923153 (+)
Sequence length	811
RNA-Seq Expression	Lcy01g005680.1
Synteny	Lcy01g005680.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAATTTGACTGTAAGGCCCTAAATCCAAACCAATTGAAACTCCTTTTTCAGTTTTCAGATACGTTGGGAAATTTTGGTTTTGTTCGAAAATCTCACACAGAAGAGAAAGAAAGCTAGAAGAAGAAGAAGAAGACGACGACGGAGCGCCAGAAGGAAGGGAATGCGGGAGCCATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGGTTCTTTTTCTCTTCGATCTATCGCCAATTGCTTCCAACTTTTTTCTGCCTTGATCGCAAAAATCAAGATACATAGGCATCTTTGATTCTCGCTGTTCGATATTCGCGTTTGATGATATTTTCTGCGAAAATATTGGAGGCTTGCAGTTTACTTCATTTACTTTCTGATGATTGTCGAACTTCCGATCTTTTTTTTAATCATATGTTCGTCTTGATTCTTGGAGTAGGGGAAGTGTACAGAGAGATAGTGGTAAAAAAATGTGTGCGGATGAAAATTACGAGAAGAAATGTGTCGAAGAAGATTCTTTAAGCTTTACCCATTGCCTTTGCAAAAAGAAAATGTAAATATGAAGTCATGATTTGAGTTGCTGCTGTGCTGCAGATTATATGCTTGGTGGATTTGGAGTGTGACTATATCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTTTTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTAAGTTTTGGTTTCCCGAATCCATTAACTCAACTGAACAACATTGTATTAGTTTAGGTCTCAGTGATCATCATTTAGTGTTGTTTCTCTCTTTCTGGCAAACATGAAGTTCAACTGGGATGCGAAATTTACTTGAATATTGTAAATTCAAAGTTCAGTTGTTAGTCCCTGATGCATCATATAGAAAAGATCTGCTTTAGGAAGAAATATATTATATAGAACTAATGAACTTTTTTTGGTAGTGGATTCTAACCATCTGGTTCGTTTAAGAGATAGAATTTCTATTTCTTGATAAGATGCCTGATTACAATTTGGTTTGATCTTCTAAGAAAACTACCTGTAATTGATAAAAATGCCTATTTCAGTTGTTTTGATTAATGATTTAATTTGAAACTACCATGGGTTGCCTAATGGTTTTTTTTTGGATATCCATGAGTGTCTGAGCTAGCTTGCATGCACGTCAACTAATCTCATGAAACAACCACCTAGCTCTATTACATTTGGTTGCCAGGAAACACGTAGGATATTAAATTTTAGGTAGGTTGCCTAATGGTTATTTGGACATGAGAAAAAGAGAGAATCCTAGGAGTTCCCTAGCAAACAAATCTTACAGGGTCAATGCACTCACACGTATCAATATATCCACTTTTTTTGTGAGCAAAACCAAGATAAAGTCTGTTCTCTTTCAAGCAAAGTTCTCTTAACTTTGCTTGAGCACACTTGAATTCTGACCTTACCGGATTCCATGTACTTGATCAGTTACAGTTGTAGGCTAAGTTTCTTAATTTATTTGGCTTTCACTTAATGCCATGTTACGAATAATTGCAACTTAAGAACAGAGGTTAGTTAAATCACTTGGGAGGATTCTTACTTTAGTTAAATTTTGAGCACCATTTTCAGGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACGTTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGTACATATACTGATACTTTTGACATTTCTGATACTGATTTTATATGATCCTTAAACTGCATAACAAGTTCTATTATTTGAATTTGTTTGCAGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAGTATGTTCTTATGAGTTTACTTATTTTAAAATTTTAACTTATCACTAACACTGTACATAGAGACGTGGATCGTGGACAGAAATAATCAACAACAATGCATCTGCATTACTTCTTTTTGATCATTCCTTTGATTTTAAAAGGTAAATCATATATTTTTTTTCCTGTACTTCATTGAAGAAGAATTTAATTTATACAAAGACCCTGAATCAGATATGC

mRNA sequence

GGAAATTTGACTGTAAGGCCCTAAATCCAAACCAATTGAAACTCCTTTTTCAGTTTTCAGATACGTTGGGAAATTTTGGTTTTGTTCGAAAATCTCACACAGAAGAGAAAGAAAGCTAGAAGAAGAAGAAGAAGACGACGACGGAGCGCCAGAAGGAAGGGAATGCGGGAGCCATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGATTATATGCTTGGTGGATTTGGAGTGTGACTATATCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTTTTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACGTTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAGTATGTTCTTATGAGTTTACTTATTTTAAAATTTTAACTTATCACTAACACTGTACATAGAGACGTGGATCGTGGACAGAAATAATCAACAACAATGCATCTGCATTACTTCTTTTTGATCATTCCTTTGATTTTAAAAGGTAAATCATATATTTTTTTTCCTGTACTTCATTGAAGAAGAATTTAATTTATACAAAGACCCTGAATCAGATATGC

Coding sequence (CDS)

ATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGATTATATGCTTGGTGGATTTGGAGTGTGACTATATCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTTTTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACGTTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAG

Protein sequence

MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWDS

Homology

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BLAST of Lcy01g005680.1 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.8e-31
Identity = 66/130 (50.77%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D++  L + F LI L+ I+ YQ++CL DLE DYIN +DS SRIN VV+ EFI Q V C
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
             +LL  HWFM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R  K+ Y +  L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FISLIWLIWS 131
           F+++ W+I+S
Sbjct: 121 FLTIFWMIYS 130

[Close]

BLAST of Lcy01g005680.1 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 8.6e-27
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 23  YQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFN 82
           + ++CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N
Sbjct: 15  FHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYN 74

Query: 83  VKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWS 131
             LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++ W+I+S
Sbjct: 75  FHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYS 122

[Close]

BLAST of Lcy01g005680.1 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-26
Identity = 62/130 (47.69%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M +V+  + +  +LI L+ ++ YQ+I L DLE DYIN +DS SRIN VV+ E I Q   C
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
             +L+  HWFM L+ +P L +N  LY R +HL DVTEI+N + WEKK+R  K+ Y I  L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FISLIWLIWS 131
           F+++ WLI+S
Sbjct: 121 FLTIFWLIYS 130

[Close]

BLAST of Lcy01g005680.1 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-24
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+   + +   L  LI I+ YQ+ CL DLE D IN +D +SRINR+V+ EF  Q + C
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
             ++L  HWFM ++SLP L +N++LY++ EHLADVTE+YN   WE+K+R  K+ +    +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FISLIWLIWS 131
           FI+  WLI S
Sbjct: 121 FITTYWLIHS 130

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BLAST of Lcy01g005680.1 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.8e-20
Identity = 50/124 (40.32%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 3   DVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 62
           D+F  + + F+ + L+  + YQ+ICL DLE DY+N F++++RINR+V+ EFI Q   C +
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 122
            LL  HW  FLV++P   ++  LY    +L DVTE++  I +EKK R+ K+ +++  LFI
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYV-FLFI 123

Query: 123 SLIW 127
            +++
Sbjct: 124 MVVF 126

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BLAST of Lcy01g005680.1 vs. ExPASy TrEMBL
Match: A0A6J1DF23 (protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020444 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.1e-60
Identity = 119/139 (85.61%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNLF+LIFL+ ILGYQ ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFC
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQRF+KM+YFI L 
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYFIILS 120

Query: 121 FISLIWLIWSVGALEKNWD 140
           FISLIW+I SVGALEKNWD
Sbjct: 121 FISLIWMISSVGALEKNWD 139

[Close]

BLAST of Lcy01g005680.1 vs. ExPASy TrEMBL
Match: A0A1S3CD35 (protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-56
Identity = 119/140 (85.00%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNL LLIFLI ILGYQIICLVDLE DYINLFDSTSRINRVVMLEFI Q VF 
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ LL
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVLL 120

Query: 121 FISLIWLIWSVGALEKNWDS 141
           FISLIW I  VGALEKNWDS
Sbjct: 121 FISLIWTIRRVGALEKNWDS 140

[Close]

BLAST of Lcy01g005680.1 vs. ExPASy TrEMBL
Match: A0A6J1DFZ1 (protein cornichon homolog 4-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020444 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 106/139 (76.26%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNLF+LIFL+ ILGYQ ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFC
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQR           
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQR----------- 120

Query: 121 FISLIWLIWSVGALEKNWD 140
                 +I SVGALEKNWD
Sbjct: 121 ------MISSVGALEKNWD 122

[Close]

BLAST of Lcy01g005680.1 vs. ExPASy TrEMBL
Match: A0A1S3CBU0 (protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNL LLIFLI ILGYQIICLVDLE DYINLFDSTSRINRVVMLEFI Q VF 
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ LL
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVLL 120

Query: 121 FISLIWLI 129
           FISLIW I
Sbjct: 121 FISLIWYI 128

[Close]

BLAST of Lcy01g005680.1 vs. ExPASy TrEMBL
Match: A0A540MX74 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011028 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           ME ++  L + F ++ L+ ILGYQ++CLVDLE DYIN +DS+SRIN V++ EFI Q V C
Sbjct: 1   MEMLWTWLLSFFFILALLCILGYQLVCLVDLEYDYINPYDSSSRINNVILPEFIIQGVLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           F+ L+ARHWFM  ++LP L +NV LY+   HL DVTEIYNQ+ WEKKQRFLK+ Y + L 
Sbjct: 61  FILLIARHWFMLFMALPHLYYNVNLYMTRRHLVDVTEIYNQLSWEKKQRFLKIGYLLVLF 120

Query: 121 FISLIWLIWSVG 133
            +SL WL+WS+G
Sbjct: 121 ILSLFWLLWSIG 132

[Close]

BLAST of Lcy01g005680.1 vs. NCBI nr
Match: XP_022152825.1 (protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831.1 protein cornichon homolog 4-like isoform X1 [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 4.3e-60
Identity = 119/139 (85.61%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNLF+LIFL+ ILGYQ ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFC
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQRF+KM+YFI L 
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYFIILS 120

Query: 121 FISLIWLIWSVGALEKNWD 140
           FISLIW+I SVGALEKNWD
Sbjct: 121 FISLIWMISSVGALEKNWD 139

[Close]

BLAST of Lcy01g005680.1 vs. NCBI nr
Match: XP_008460129.1 (PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 3.8e-56
Identity = 119/140 (85.00%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNL LLIFLI ILGYQIICLVDLE DYINLFDSTSRINRVVMLEFI Q VF 
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ LL
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVLL 120

Query: 121 FISLIWLIWSVGALEKNWDS 141
           FISLIW I  VGALEKNWDS
Sbjct: 121 FISLIWTIRRVGALEKNWDS 140

[Close]

BLAST of Lcy01g005680.1 vs. NCBI nr
Match: XP_008460127.1 (PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-50
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNL LLIFLI ILGYQIICLVDLE DYINLFDSTSRINRVVMLEFI Q VF 
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ LL
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVLL 120

Query: 121 FISLIWLI 129
           FISLIW I
Sbjct: 121 FISLIWYI 128

[Close]

BLAST of Lcy01g005680.1 vs. NCBI nr
Match: XP_022152838.1 (protein cornichon homolog 4-like isoform X2 [Momordica charantia] >XP_022152841.1 protein cornichon homolog 4-like isoform X2 [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-50
Identity = 106/139 (76.26%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+FA LFNLF+LIFL+ ILGYQ ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFC
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           FVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQR           
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQR----------- 120

Query: 121 FISLIWLIWSVGALEKNWD 140
                 +I SVGALEKNWD
Sbjct: 121 ------MISSVGALEKNWD 122

[Close]

BLAST of Lcy01g005680.1 vs. NCBI nr
Match: XP_008375821.1 (protein cornichon homolog 4-like [Malus domestica] >TQE03377.1 hypothetical protein C1H46_011028 [Malus baccata])

HSP 1 Score: 159.5 bits (402), Expect = 2.2e-35
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           ME ++  L + F ++ L+ ILGYQ++CLVDLE DYIN +DS+SRIN V++ EFI Q V C
Sbjct: 1   MEMLWTWLLSFFFILALLCILGYQLVCLVDLEYDYINPYDSSSRINNVILPEFIIQGVLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
           F+ L+ARHWFM  ++LP L +NV LY+   HL DVTEIYNQ+ WEKKQRFLK+ Y + L 
Sbjct: 61  FILLIARHWFMLFMALPHLYYNVNLYMTRRHLVDVTEIYNQLSWEKKQRFLKIGYLLVLF 120

Query: 121 FISLIWLIWSVG 133
            +SL WL+WS+G
Sbjct: 121 ILSLFWLLWSIG 132

[Close]

BLAST of Lcy01g005680.1 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 134.4 bits (337), Expect = 7.0e-32
Identity = 66/130 (50.77%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D++  L + F LI L+ I+ YQ++CL DLE DYIN +DS SRIN VV+ EFI Q V C
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
             +LL  HWFM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R  K+ Y +  L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FISLIWLIWS 131
           F+++ W+I+S
Sbjct: 121 FLTIFWMIYS 130

[Close]

BLAST of Lcy01g005680.1 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 121.3 bits (303), Expect = 6.1e-28
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 23  YQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFN 82
           + ++CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N
Sbjct: 15  FHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYN 74

Query: 83  VKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWS 131
             LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++ W+I+S
Sbjct: 75  FHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYS 122

[Close]

BLAST of Lcy01g005680.1 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 62/130 (47.69%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M +V+  + +  +LI L+ ++ YQ+I L DLE DYIN +DS SRIN VV+ E I Q   C
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
             +L+  HWFM L+ +P L +N  LY R +HL DVTEI+N + WEKK+R  K+ Y I  L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FISLIWLIWS 131
           F+++ WLI+S
Sbjct: 121 FLTIFWLIYS 130

[Close]

BLAST of Lcy01g005680.1 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-25
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MEDVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFC 60
           M D+   + +   L  LI I+ YQ+ CL DLE D IN +D +SRINR+V+ EF  Q + C
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  FVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLL 120
             ++L  HWFM ++SLP L +N++LY++ EHLADVTE+YN   WE+K+R  K+ +    +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FISLIWLIWS 131
           FI+  WLI S
Sbjct: 121 FITTYWLIHS 130

[Close]

BLAST of Lcy01g005680.1 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-21
Identity = 50/124 (40.32%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 3   DVFASLFNLFLLIFLIPILGYQIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 62
           D+F  + + F+ + L+  + YQ+ICL DLE DY+N F++++RINR+V+ EFI Q   C +
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 122
            LL  HW  FLV++P   ++  LY    +L DVTE++  I +EKK R+ K+ +++  LFI
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYV-FLFI 123

Query: 123 SLIW 127
            +++
Sbjct: 124 MVVF 126

The following BLAST results are available for this feature:

BLAST of Lcy01g005680.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W04	9.8e-31	50.77	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q3EDD7	8.6e-27	51.85	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q8GWT5	1.9e-26	47.69	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q9SZ74	4.0e-24	46.15	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q9C7D7	7.8e-20	40.32	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]

BLAST of Lcy01g005680.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DF23	2.1e-60	85.61	protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3CD35	1.8e-56	85.00	protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A6J1DFZ1	4.4e-50	76.26	protein cornichon homolog 4-like isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3CBU0	4.4e-50	85.16	protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A540MX74	1.0e-35	57.58	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011028 PE=3 SV=1	[more]

BLAST of Lcy01g005680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152825.1	4.3e-60	85.61	protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831....	[more]
XP_008460129.1	3.8e-56	85.00	PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo]	[more]
XP_008460127.1	9.1e-50	85.16	PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo]	[more]
XP_022152838.1	9.1e-50	76.26	protein cornichon homolog 4-like isoform X2 [Momordica charantia] >XP_022152841....	[more]
XP_008375821.1	2.2e-35	57.58	protein cornichon homolog 4-like [Malus domestica] >TQE03377.1 hypothetical prot...	[more]

BLAST of Lcy01g005680.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12390.1	7.0e-32	50.77	Cornichon family protein	[more]
AT1G12340.1	6.1e-28	51.85	Cornichon family protein	[more]
AT1G62880.1	1.4e-27	47.69	Cornichon family protein	[more]
AT4G12090.1	2.8e-25	46.15	Cornichon family protein	[more]
AT3G12180.1	5.5e-21	40.32	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 4..125 e-value: 7.4E-44 score: 161.7
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 7..124 e-value: 2.8E-34 score: 118.1
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 1..131
None	No IPR available	PANTHER	PTHR12290:SF22	CORNICHON FAMILY PROTEIN	coord: 1..131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy01g005680	Lcy01g005680	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g005680.1.utr5p1	Lcy01g005680.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g005680.1.exon1	Lcy01g005680.1.exon1	exon
Lcy01g005680.1.exon2	Lcy01g005680.1.exon2	exon
Lcy01g005680.1.exon3	Lcy01g005680.1.exon3	exon
Lcy01g005680.1.exon4	Lcy01g005680.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g005680.1.cds1	Lcy01g005680.1.cds1	CDS
Lcy01g005680.1.cds2	Lcy01g005680.1.cds2	CDS
Lcy01g005680.1.cds3	Lcy01g005680.1.cds3	CDS
Lcy01g005680.1.cds4	Lcy01g005680.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g005680.1.utr3p1	Lcy01g005680.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy01g005680.1	Lcy01g005680.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane