Lag0042183.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0042183.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr13: 38141971 .. 38142696 (+)
Sequence length	726
RNA-Seq Expression	Lag0042183.1
Synteny	Lag0042183.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTACTACAATGATGTCTTCAAACCCTTCCCCTGCTAAGGACGACACTCAGACTCCGATTTTCCTTCTCTCCAATATTTGCAACTTGATTTCTATTCGGCTTGATTCATCCAATTTTGTACTCTGGAAATTTCAATTCACTTCTCTCTTGAAGGCTCACAAACTATTTAGTTTTGTTGATGGCTCTAATCCGTGTCCTGCTGCCACAATTCGATCGTCCTCTACCACTGGTGATTCTTCATCTCCTTCCTCTGTTACTCAATCAGTTCCTAATCCTCTTTATGAAGACTGGATTGCGAAGGATCATGCTCTCATGACACTGATCAATGCTACACTATCGTCAGAAGCTCTTGCATACATTGTCGGCACCAAGTCTTCTCAACAGGTTTGGGAGACTCTTGAAAAACATTATTCTTCTAATTCTCGTGCCAATATTGTTAATTTAAAGACTGAGTTGCAATCTGTTACTAAAAATTCTGGGGAGACTATTGATGCTTATATCAAAAGGATTAAGGAAATCAAGGATCGATTGGCTAATGTTTCTGTTGTTGTTAATGAGGAAGATTTGCTCATCTACATCTTGAATGGCTTACCTAGTGATTATAATACTTTTCGGACCTCTATGAGGACTCGCTCACAATCTATCTCTTTTGGAGAATTACATGCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTTAG

mRNA sequence

ATGAGTTCTACTACAATGATGTCTTCAAACCCTTCCCCTGCTAAGGACGACACTCAGACTCCGATTTTCCTTCTCTCCAATATTTGCAACTTGATTTCTATTCGGCTTGATTCATCCAATTTTGTACTCTGGAAATTTCAATTCACTTCTCTCTTGAAGGCTCACAAACTATTTAGTTTTGTTGATGGCTCTAATCCGTGTCCTGCTGCCACAATTCGATCGTCCTCTACCACTGGTGATTCTTCATCTCCTTCCTCTGTTACTCAATCAGTTCCTAATCCTCTTTATGAAGACTGGATTGCGAAGGATCATGCTCTCATGACACTGATCAATGCTACACTATCGTCAGAAGCTCTTGCATACATTGTCGGCACCAAGTCTTCTCAACAGGTTTGGGAGACTCTTGAAAAACATTATTCTTCTAATTCTCGTGCCAATATTGTTAATTTAAAGACTGAGTTGCAATCTGTTACTAAAAATTCTGGGGAGACTATTGATGCTTATATCAAAAGGATTAAGGAAATCAAGGATCGATTGGCTAATGTTTCTGTTGTTGTTAATGAGGAAGATTTGCTCATCTACATCTTGAATGGCTTACCTAGTGATTATAATACTTTTCGGACCTCTATGAGGACTCGCTCACAATCTATCTCTTTTGGAGAATTACATGCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTTAG

Coding sequence (CDS)

ATGAGTTCTACTACAATGATGTCTTCAAACCCTTCCCCTGCTAAGGACGACACTCAGACTCCGATTTTCCTTCTCTCCAATATTTGCAACTTGATTTCTATTCGGCTTGATTCATCCAATTTTGTACTCTGGAAATTTCAATTCACTTCTCTCTTGAAGGCTCACAAACTATTTAGTTTTGTTGATGGCTCTAATCCGTGTCCTGCTGCCACAATTCGATCGTCCTCTACCACTGGTGATTCTTCATCTCCTTCCTCTGTTACTCAATCAGTTCCTAATCCTCTTTATGAAGACTGGATTGCGAAGGATCATGCTCTCATGACACTGATCAATGCTACACTATCGTCAGAAGCTCTTGCATACATTGTCGGCACCAAGTCTTCTCAACAGGTTTGGGAGACTCTTGAAAAACATTATTCTTCTAATTCTCGTGCCAATATTGTTAATTTAAAGACTGAGTTGCAATCTGTTACTAAAAATTCTGGGGAGACTATTGATGCTTATATCAAAAGGATTAAGGAAATCAAGGATCGATTGGCTAATGTTTCTGTTGTTGTTAATGAGGAAGATTTGCTCATCTACATCTTGAATGGCTTACCTAGTGATTATAATACTTTTCGGACCTCTATGAGGACTCGCTCACAATCTATCTCTTTTGGAGAATTACATGCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTTAG

Protein sequence

MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSFVDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALAYIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLANVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAADILSWVF

Homology

[Close]

BLAST of Lag0042183.1 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-72
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-72
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-72
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-72
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 2.9e-72
Identity = 153/237 (64.56%), Postives = 186/237 (78.48%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKLF F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVP---NPLYEDWIAKDHALMTLINATLSSE 120
           VDG+NPCP             +SPS+ T +VP   NPLYEDWIAKD ALMT+INATLS E
Sbjct: 61  VDGTNPCP------------QTSPST-TSTVPPQTNPLYEDWIAKDQALMTVINATLSPE 120

Query: 121 ALAYIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKD 180
           ALAY+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD
Sbjct: 121 ALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKD 180

Query: 181 RLANVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           +LANVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 KLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 222

[Close]

BLAST of Lag0042183.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-09
Identity = 48/191 (25.13%), Postives = 85/191 (44.50%), Query Frame = 0


Query: 35  RLDSSNFVLWKFQFTSLLKAHKLFSFVDGSNPCPAATIRSSSTTGDSSSPSSVTQSVP-- 94
           +L S+N+++W  Q  +L   ++L  F+DGS P P ATI               T +VP  
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIG--------------TDAVPRV 84

Query: 95  NPLYEDWIAKDHALMTLINATLSSEALAYIVGTKSSQQVWETLEKHYSSNSRANIVNLKT 154
           NP Y  W  +D  + + I   +S      +    ++ Q+WETL K Y++ S  ++    T
Sbjct: 85  NPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHV----T 144

Query: 155 ELQSVTKNSGETIDAYIKRIKEIKDRLANVSVVVNEEDLLIYILNGLPSDYNTFRTSMRT 214
           +L+ +T+                 D+LA +   ++ ++ +  +L  LP DY      +  
Sbjct: 145 QLRFITR----------------FDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAA 181

Query: 215 RSQSISFGELH 224
           +    S  E+H
Sbjct: 205 KDTPPSLTEIH 181

[Close]

BLAST of Lag0042183.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08
Identity = 33/114 (28.95%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 97  EDWIAKDHALMTLINATLSSEALAYIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQS 156
           EDW   D    + I   LS + +  I+   +++ +W  LE  Y S +  N + LK +L +
Sbjct: 50  EDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYA 109

Query: 157 VTKNSGETIDAYIKRIKEIKDRLANVSVVVNEEDLLIYILNGLPSDYNTFRTSM 211
           +  + G    +++     +  +LAN+ V + EED  I +LN LPS Y+   T++
Sbjct: 110 LHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTI 163

[Close]

BLAST of Lag0042183.1 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.3e-73
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.3e-73
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.3e-73
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.3e-73
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 1   MSSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSF 60
           MSS+T + S  S A+ D+ +PIFLLSNICNLIS+RLDS+NFVLWKFQ T++LKAHKL+ F
Sbjct: 1   MSSSTTLPS--SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGF 60

Query: 61  VDGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALA 120
           +DG+NPCP  T  SSST        S      NP YEDWIAKD ALMT+INATLS EALA
Sbjct: 61  IDGTNPCPPRTNNSSST--------STVPPQSNPSYEDWIAKDQALMTVINATLSPEALA 120

Query: 121 YIVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLA 180
           Y+VG+ SS+QVW+ L K YSS SR+N+VNLK++LQ++ K   E+IDAYIKRIKEIKD+LA
Sbjct: 121 YVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLA 180

Query: 181 NVSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATSSRRGAA 235
           NVS  +NEEDLLIY LNGLP++YNTFRTSMRTRSQ ++F ELH +  +     A
Sbjct: 181 NVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALA 224

[Close]

BLAST of Lag0042183.1 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 8.6e-70
Identity = 142/227 (62.56%), Postives = 180/227 (79.30%), Query Frame = 0


Query: 2   SSTTMMSSNPSPAKDDTQTPIFLLSNICNLISIRLDSSNFVLWKFQFTSLLKAHKLFSFV 61
           SS   M+S+ +  K D  +PIFLLSNICNL+SIRLDS++F+LWKFQ T++LKAHKLF F+
Sbjct: 17  SSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFI 76

Query: 62  DGSNPCPAATIRSSSTTGDSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEALAY 121
           DGS   P+  + SSS T +S   ++ +  V NP +EDWIAKD ALMTLINATLS+EALAY
Sbjct: 77  DGSVSAPSQFLASSSET-ESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAY 136

Query: 122 IVGTKSSQQVWETLEKHYSSNSRANIVNLKTELQSVTKNSGETIDAYIKRIKEIKDRLAN 181
           +V + +S+QVWE LEKHYSSNSR N+VNLK++LQS+ K + E+IDAY+KRIKEIKD+ AN
Sbjct: 137 VVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDKFAN 196

Query: 182 VSVVVNEEDLLIYILNGLPSDYNTFRTSMRTRSQSISFGELHAVATS 229
           VS+ +N+E LLIY LNGL ++YNT  TSMRTR+QS+SF ELH    S
Sbjct: 197 VSITINDEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKS 242

[Close]

BLAST of Lag0042183.1 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06
Identity = 47/204 (23.04%), Postives = 92/204 (45.10%), Query Frame = 0


Query: 22  IFLLSNICNLISIRLD--SSNFVLWKFQFTSLLKAHKLFSFVDGSNPCPAATIRSSSTTG 81
           I+ +SNI + I + LD   SN+  W+  F +   +  +   +DG                
Sbjct: 10  IYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDG---------------- 69

Query: 82  DSSSPSSVTQSVPNPLYEDWIAKDHALMTLINATLSSEAL-AYIVGTKSSQQVWETLEKH 141
                   T    N    +W  +D  +   +  TL+ +      V + +S+ +W  ++  
Sbjct: 70  --------TLLPTNANDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQ 129

Query: 142 YSSNSRANIVNLKTELQSVTKNSGE-TIDAYIKRIKEIKDRLANVSVVVNEEDLLIYILN 201
           + +N  A  + L +EL+  TK+ G+  +  Y +++K++ D L NV V V + +L++Y+LN
Sbjct: 130 FRNNKDARALRLDSELR--TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLN 187

Query: 202 GLPSDYNTFRTSMRTRSQSISFGE 222
           GL   ++     ++ R    SF +
Sbjct: 190 GLNPKFDNIINVIKHRQPFPSFDD 187

The following BLAST results are available for this feature:

BLAST of Lag0042183.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448007.1	1.7e-72	64.10	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	1.7e-72	64.10	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	1.7e-72	64.10	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	1.7e-72	64.10	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]
KAE8645659.1	2.9e-72	64.56	hypothetical protein Csa_020439 [Cucumis sativus]	[more]

BLAST of Lag0042183.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	4.8e-09	25.13	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	5.3e-08	28.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Lag0042183.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLI6	8.3e-73	64.10	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	8.3e-73	64.10	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	8.3e-73	64.10	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	8.3e-73	64.10	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1D9L6	8.6e-70	62.56	uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Lag0042183.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	1.3e-06	23.04	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 99..222 e-value: 6.9E-27 score: 93.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 18..228
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 18..228
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 30..69 e-value: 1.4E-8 score: 34.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0042183	Lag0042183	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0042183.1.exon1	Lag0042183.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0042183.1	cds.Lag0042183.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0042183.1	Lag0042183.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding