Lag0037707.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0037707.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr2: 8539602 .. 8540012 (+)
Sequence length411
RNA-Seq ExpressionLag0037707.1
SyntenyLag0037707.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAACAGGAGCGAGTCATGGGAGATGCTCAGACATCTAAAGCAGGGGAGGAAACAGACGGAACAGCCTCCATGGAAGAGGCAACAATACACAGACAGATGGAAAAACTAAATTTGACAATAGCAGAACGGAGCAAAGTTTCAGGGATGGACGACGATGAGCTGAACAGGAAGATCCAAGACCTCGAAAACATAGCCGTTTGCAAAATCTTAACAGAAAAGTACATGAACCCGGAAATCTTCAAGAATATGATACCCAAGATCTGGCACATGGAAGGAAGAGTGGGTATAAAAAAGGTGGGTGAAAATATGTTTGAGTGCGCTTTCAACTCTTTGAAGGACAAAAGAAGAGTAATAGAGGGGGGCCATGGCTTTATGACAGAGCCCTCCTTGTTTTTGAAGAGATAA

mRNA sequence

ATGGACAAACAGGAGCGAGTCATGGGAGATGCTCAGACATCTAAAGCAGGGGAGGAAACAGACGGAACAGCCTCCATGGAAGAGGCAACAATACACAGACAGATGGAAAAACTAAATTTGACAATAGCAGAACGGAGCAAAGTTTCAGGGATGGACGACGATGAGCTGAACAGGAAGATCCAAGACCTCGAAAACATAGCCGTTTGCAAAATCTTAACAGAAAAGTACATGAACCCGGAAATCTTCAAGAATATGATACCCAAGATCTGGCACATGGAAGGAAGAGTGGGTATAAAAAAGGTGGGTGAAAATATGTTTGAGTGCGCTTTCAACTCTTTGAAGGACAAAAGAAGAGTAATAGAGGGGGGCCATGGCTTTATGACAGAGCCCTCCTTGTTTTTGAAGAGATAA

Coding sequence (CDS)

ATGGACAAACAGGAGCGAGTCATGGGAGATGCTCAGACATCTAAAGCAGGGGAGGAAACAGACGGAACAGCCTCCATGGAAGAGGCAACAATACACAGACAGATGGAAAAACTAAATTTGACAATAGCAGAACGGAGCAAAGTTTCAGGGATGGACGACGATGAGCTGAACAGGAAGATCCAAGACCTCGAAAACATAGCCGTTTGCAAAATCTTAACAGAAAAGTACATGAACCCGGAAATCTTCAAGAATATGATACCCAAGATCTGGCACATGGAAGGAAGAGTGGGTATAAAAAAGGTGGGTGAAAATATGTTTGAGTGCGCTTTCAACTCTTTGAAGGACAAAAGAAGAGTAATAGAGGGGGGCCATGGCTTTATGACAGAGCCCTCCTTGTTTTTGAAGAGATAA

Protein sequence

MDKQERVMGDAQTSKAGEETDGTASMEEATIHRQMEKLNLTIAERSKVSGMDDDELNRKIQDLENIAVCKILTEKYMNPEIFKNMIPKIWHMEGRVGIKKVGENMFECAFNSLKDKRRVIEGGHGFMTEPSLFLKR
Homology
BLAST of Lag0037707.1 vs. NCBI nr
Match: XP_022143536.1 (uncharacterized protein LOC111013413 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11
Identity = 38/110 (34.55%), Postives = 67/110 (60.91%), Query Frame = 0

Query: 26  MEEATIHRQMEKLNLTIAERSKVSGMDDDELNRKIQDLENIAVCKILTEKYMNPEIFKNM 85
           M +  + RQ+E+L LT  E+ ++  M +DE+    +  +   VCK+LT K +  E+FKNM
Sbjct: 1   MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNM 60

Query: 86  IPKIWHMEGRVGIKKVGENMFECAFNSLKDKRRVIEGGHGFMTEPSLFLK 136
           +P+IW +   V I+ VG+N+F C F +++DK +++  G  F  +  + L+
Sbjct: 61  MPRIW-VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSFFDKSMVMLE 109

BLAST of Lag0037707.1 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 38/118 (32.20%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 26  MEEATIHRQMEKLNLTIAERSKVSGMDDDEL----NRKIQDLENIA----VCKILTEKYM 85
           M +  + + +E+L LT  E+ ++  M + E+      +I+D +  A    VCK+LT K +
Sbjct: 1   MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 86  NPEIFKNMIPKIWHMEGRVGIKKVGENMFECAFNSLKDKRRVIEGGHGFMTEPSLFLK 136
             E+FKNM+P+IW     V I+ VG+N+F C F +++DK +++  G  F  +  + L+
Sbjct: 61  PGEVFKNMMPRIW-ANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLE 117

BLAST of Lag0037707.1 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 38/118 (32.20%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 26  MEEATIHRQMEKLNLTIAERSKVSGMDDDEL----NRKIQDLENIA----VCKILTEKYM 85
           M +  + + +E+L LT  E+ ++  M + E+      +I+D +  A    VCK+LT K +
Sbjct: 1   MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 86  NPEIFKNMIPKIWHMEGRVGIKKVGENMFECAFNSLKDKRRVIEGGHGFMTEPSLFLK 136
             E+FKNM+P+IW     V I+ VG+N+F C F +++DK +++  G  F  +  + L+
Sbjct: 61  PGEVFKNMMPRIW-ANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLE 117

BLAST of Lag0037707.1 vs. NCBI nr
Match: TXG62563.1 (hypothetical protein EZV62_009557 [Acer yangbiense])

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-07
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 40  LTIAERSKVSGMDDDELNRKIQDLENIAVC---KILTEKYMNPEIFKNMIPKIWHMEGRV 99
           L+I E+   + + D +L  K +  + +A+C   K+LT K +N E FK+++ +IWH+ G V
Sbjct: 54  LSIGEKESPAKILDVKLKDKGE--QRLALCLVGKVLTSKIVNREAFKDVMKRIWHINGGV 113

Query: 100 GIKKVGENMFECAFNSLKDKRRVIEGG 124
            I+ + +N+FEC F +L+ ++R++ GG
Sbjct: 114 EIEAIKDNIFECHFTNLEARKRILSGG 138

BLAST of Lag0037707.1 vs. NCBI nr
Match: XP_042983316.1 (uncharacterized protein LOC122312712 [Carya illinoinensis])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 31/97 (31.96%), Postives = 52/97 (53.61%), Query Frame = 0

Query: 26  MEEATIHRQMEKLNLTIAERSKVSGMDDDELNRKIQDLENIAVCKILTEKYMNPEIFKNM 85
           M E  + +  E LNL   E   V  +D D L    + + N  + K++TE+  N E F++ 
Sbjct: 1   MVEEDLSKLWEGLNLIEVEEQLVKVLDHDILAAAQRGI-NCLMAKVITERNFNKEAFRST 60

Query: 86  IPKIWHMEGRVGIKKVGENMFECAFNSLKDKRRVIEG 123
           +P++W +EG V   ++GE+ F   F    DK ++I+G
Sbjct: 61  MPQLWRIEGGVTFTEIGESSFMLEFEKCSDKEKIIQG 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143536.12.1e-1134.55uncharacterized protein LOC111013413 [Momordica charantia][more]
XP_022154990.13.7e-0832.20uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022154991.13.7e-0832.20uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
TXG62563.19.2e-0735.63hypothetical protein EZV62_009557 [Acer yangbiense][more]
XP_042983316.11.3e-0531.96uncharacterized protein LOC122312712 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 57..134
e-value: 2.6E-8
score: 33.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0037707Lag0037707gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0037707.1.exon1Lag0037707.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0037707.1cds.Lag0037707.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0037707.1Lag0037707.1-proteinpolypeptide