Lag0036908.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036908.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr2: 2035743 .. 2036554 (-)
Sequence length	738
RNA-Seq Expression	Lag0036908.1
Synteny	Lag0036908.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTGAGTTGTTCGTTAGCGGAGATTGGTTTGGTAGCGGTGACGTGCTGGACTATCTGGACAGATAGGAATAAACTGATTCATGATGAAGCTATTCCTCCGATTGAAGTTAGAAGCAAATGGATAACTGAGTACCTGACAAAATTTCTGGAAGCGAAGTCGAAATCCCCTGTCGGCATCTCGGCTAACCGGAGAAATGACCCTGGTGCAGCTATCGTCCTCTGGTCTCCTCCTCCAAATGGTGTCTGGAAATTTAACGTCGATGCTGCCTGGTCTCCTTGTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGTAGATTCTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGTAGATCTGAATTTGGAAGGGCCGGAAGCTGAACTGAGAGCAATCAAAGATGGTCTCTCTCTAGCCATGGAGCTAAGATATACTGATGTGGTTGTGGAATCTGATTCATTGATGGCGGTGAAATTTGTGAGGAAAGAAGCGCTGATATGTGGAGTAGTTTGGAAAGCCTTGTTTGTCATATTTGGGAACAAATGTCCAATTTTAGTAATATTTCTTTTAACTTTGTCTCTGGGATAAATAATAGTATAGCTGATATCCTTGCTAAGAGAGCTAAAATGTCTAAATCTAGCATATCCTCAGTTGAGAATTTCCCAGCTTGGTTGTATTCTTTGGTCGAGGATGACCTTCTTCTCTTTGCCCATGTGGCGTTATAA

mRNA sequence

ATGGGAGTGAGTTGTTCGTTAGCGGAGATTGGTTTGGTAGCGGTGACGTGCTGGACTATCTGGACAGATAGGAATAAACTGATTCATGATGAAGCTATTCCTCCGATTGAAGTTAGAAGCAAATGGATAACTGAGTACCTGACAAAATTTCTGGAAGCGAAGTCGAAATCCCCTGTCGGCATCTCGGCTAACCGGAGAAATGACCCTGGTGCAGCTATCGTCCTCTGGTCTCCTCCTCCAAATGGTGTCTGGAAATTTAACGTCGATGCTGCCTGGTCTCCTTGTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGTAGATTCTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGTAGATCTGAATTTGGAAGGGCCGGAAGCTGAACTGAGAGCAATCAAAGATGGTCTCTCTCTAGCCATGGAGCTAAGATATACTGATGTGGTTGTGGAATCTGATTCATTGATGGCGGTGAAATTTGTGAGGAAAGAAGCGCTGATATGTGGAGTAGTTTGGAAAGCCTTTATAGCTGATATCCTTGCTAAGAGAGCTAAAATGTCTAAATCTAGCATATCCTCAGTTGAGAATTTCCCAGCTTGGTTGTATTCTTTGGTCGAGGATGACCTTCTTCTCTTTGCCCATGTGGCGTTATAA

Coding sequence (CDS)

ATGGGAGTGAGTTGTTCGTTAGCGGAGATTGGTTTGGTAGCGGTGACGTGCTGGACTATCTGGACAGATAGGAATAAACTGATTCATGATGAAGCTATTCCTCCGATTGAAGTTAGAAGCAAATGGATAACTGAGTACCTGACAAAATTTCTGGAAGCGAAGTCGAAATCCCCTGTCGGCATCTCGGCTAACCGGAGAAATGACCCTGGTGCAGCTATCGTCCTCTGGTCTCCTCCTCCAAATGGTGTCTGGAAATTTAACGTCGATGCTGCCTGGTCTCCTTGTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGTAGATTCTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGTAGATCTGAATTTGGAAGGGCCGGAAGCTGAACTGAGAGCAATCAAAGATGGTCTCTCTCTAGCCATGGAGCTAAGATATACTGATGTGGTTGTGGAATCTGATTCATTGATGGCGGTGAAATTTGTGAGGAAAGAAGCGCTGATATGTGGAGTAGTTTGGAAAGCCTTTATAGCTGATATCCTTGCTAAGAGAGCTAAAATGTCTAAATCTAGCATATCCTCAGTTGAGAATTTCCCAGCTTGGTTGTATTCTTTGGTCGAGGATGACCTTCTTCTCTTTGCCCATGTGGCGTTATAA

Protein sequence

MGVSCSLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGVVWKAFIADILAKRAKMSKSSISSVENFPAWLYSLVEDDLLLFAHVAL

Homology

[Close]

BLAST of Lag0036908.1 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-15
Identity = 79/262 (30.15%), Postives = 113/262 (43.13%), Query Frame = 0


Query: 9    EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRND 68
            ++ L A+T W IW DRN LIH + + P+E + +W+T +L    +A+  +    S   +++
Sbjct: 1230 DLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSN---YSPRTQSN 1289

Query: 69   PGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPATGI 128
                +  W P  +   K N DAA   C  A                          +T  
Sbjct: 1290 HRPVVQYWRPSSSVSLKLNTDAA---CRGA--------------------------STSF 1349

Query: 129  GVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKF 188
            G I RDS+  LV A    V   L    AE+R I +GL  A    +T + VESDSL+A++ 
Sbjct: 1350 GCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQL 1409

Query: 189  VRKE---------------ALICGVVWKAF---------IADILAKRAKMSKSSISS-VE 245
            +R E               AL C   + +F          A  LAK    S S+  + + 
Sbjct: 1410 IRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLF 1459

[Close]

BLAST of Lag0036908.1 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-11
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 6   SLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR 65
           S +E+ L  +TCW +W DR+ LI+ + IP   ++ +WI +Y     E + K   G+   +
Sbjct: 5   STSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAE---EVRMKYHNGM---K 64

Query: 66  RNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPA 125
           R  P   +  W PP  GV K N DAA S     +G+GV+ R+    +VGA + F      
Sbjct: 65  RRIP--RVNEWRPPLGGVVKMNTDAAVSE--EGSGVGVLLREGNAEIVGAMVDF------ 124

Query: 126 TGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMA 185
                              H V   L    A++ AI++GLSLA  L    VVVE+DSL A
Sbjct: 125 -------------------HMVKTPL---LAKILAIREGLSLATRLGVHRVVVETDSLEA 150

Query: 186 VKFV 190
           +  +
Sbjct: 185 LNLI 150

[Close]

BLAST of Lag0036908.1 vs. NCBI nr
Match: XP_023874626.1 (uncharacterized protein LOC111987155 [Quercus suber])

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-11
Identity = 68/250 (27.20%), Postives = 100/250 (40.00%), Query Frame = 0


Query: 14   AVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAI 73
            AVT W++W +RN L             K   EY+    E KS  P  +  +  + P    
Sbjct: 957  AVTAWSLWNNRNTLTFGGQCKGQGALIKAAREYVE---EIKSVRPPRLGPSHPSLPNCP- 1016

Query: 74   VLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPATGIGVIGR 133
              W PP NG +K N D A                               + + GIGV+ R
Sbjct: 1017 --WLPPHNGWYKINTDGA---------------------------VFSEMGSCGIGVVIR 1076

Query: 134  DSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEA 193
            +  G+L+GA    +D+ L   E E RA+++G+ LA +L    +V+ESDSL  V  VR  +
Sbjct: 1077 NERGLLMGAMSKMIDMPLGALEVEARAVEEGVRLAWDLGLKKIVLESDSLSVVNAVRVPS 1136

Query: 194  LICGVVWKAF------------------------IADILAKRAKMSKSSISSVENFPAWL 240
            L    + K                           A ++AK AK     I  VE+ P  +
Sbjct: 1137 LSPSSILKVVEGTRLELCCFDEWDISHTRRSGNSAAHVMAKYAKSVTDCIIWVEDTPPLI 1173

[Close]

BLAST of Lag0036908.1 vs. NCBI nr
Match: XP_023880941.1 (uncharacterized protein LOC111993328 [Quercus suber])

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-11
Identity = 48/173 (27.75%), Postives = 82/173 (47.40%), Query Frame = 0


Query: 14  AVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAI 73
           AVT W++W  RN + H +        +K I +YL +  +         + N    P  ++
Sbjct: 505 AVTAWSLWNHRNAVKHGDKCKTAARITKEIADYLKEIKQE--------NLNPSRPPDVSV 564

Query: 74  VLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPATGIGVIGR 133
             WSPP NG +K N D            G + +D               +   G+G++ R
Sbjct: 565 PHWSPPRNGWYKVNAD------------GAVFKD---------------IGCCGVGIVIR 624

Query: 134 DSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAV 187
           ++ G+L+GA    V L L+  E+E RA+++G+ LA +L   ++ +ESDSL+ +
Sbjct: 625 NNKGLLMGALSKLVKLPLKALESEARAVQEGVLLAWDLGLREIEIESDSLVVI 642

[Close]

BLAST of Lag0036908.1 vs. NCBI nr
Match: ABA98898.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-10
Identity = 48/192 (25.00%), Postives = 86/192 (44.79%), Query Frame = 0


Query: 15   VTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR--------R 74
            ++ W IW  RN++ HD+A PP+EV  +++  Y+    E K++    + + +        +
Sbjct: 960  MSLWRIWYTRNEITHDKAAPPVEVSKRFVRSYVNSLKEIKARPNANLGSGKHVIGEDRPK 1019

Query: 75   NDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPAT 134
                + +  W  PP+G  K NVD ++              D+ G                
Sbjct: 1020 CKKQSVLAKWEKPPSGWMKLNVDGSYQ------------EDNIG---------------- 1079

Query: 135  GIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAV 194
             I  I R+S G ++ AA  FV+      EAE+ A K+G+ LA++     +++ESD   A+
Sbjct: 1080 EISAILRNSTGDVIFAACGFVEQCQSALEAEILACKEGIGLALQWTLLPIIIESDCAEAL 1123

Query: 195  KFVRKEALICGV 199
            + +  E  +  V
Sbjct: 1140 QLILSEGKLRSV 1123

[Close]

BLAST of Lag0036908.1 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-15
Identity = 79/262 (30.15%), Postives = 113/262 (43.13%), Query Frame = 0


Query: 9    EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRND 68
            ++ L A+T W IW DRN LIH + + P+E + +W+T +L    +A+  +    S   +++
Sbjct: 1230 DLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSN---YSPRTQSN 1289

Query: 69   PGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPATGI 128
                +  W P  +   K N DAA   C  A                          +T  
Sbjct: 1290 HRPVVQYWRPSSSVSLKLNTDAA---CRGA--------------------------STSF 1349

Query: 129  GVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKF 188
            G I RDS+  LV A    V   L    AE+R I +GL  A    +T + VESDSL+A++ 
Sbjct: 1350 GCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQL 1409

Query: 189  VRKE---------------ALICGVVWKAF---------IADILAKRAKMSKSSISS-VE 245
            +R E               AL C   + +F          A  LAK    S S+  + + 
Sbjct: 1410 IRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLF 1459

[Close]

BLAST of Lag0036908.1 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 6   SLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR 65
           S +E+ L  +TCW +W DR+ LI+ + IP   ++ +WI +Y     E + K   G+   +
Sbjct: 5   STSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAE---EVRMKYHNGM---K 64

Query: 66  RNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPA 125
           R  P   +  W PP  GV K N DAA S     +G+GV+ R+    +VGA + F      
Sbjct: 65  RRIP--RVNEWRPPLGGVVKMNTDAAVSE--EGSGVGVLLREGNAEIVGAMVDF------ 124

Query: 126 TGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMA 185
                              H V   L    A++ AI++GLSLA  L    VVVE+DSL A
Sbjct: 125 -------------------HMVKTPL---LAKILAIREGLSLATRLGVHRVVVETDSLEA 150

Query: 186 VKFV 190
           +  +
Sbjct: 185 LNLI 150

[Close]

BLAST of Lag0036908.1 vs. ExPASy TrEMBL
Match: A0A803QHU3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 68/235 (28.94%), Postives = 113/235 (48.09%), Query Frame = 0


Query: 9   EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGIS-ANRRN 68
           E+ L+  T W+IW +RN+++H     P  V + +   YLT +  A++K  V     + + 
Sbjct: 446 EMELIICTLWSIWMERNRIVHGSKAKPAVVLASFADNYLTNYRAARNKYHVADPLIHHQP 505

Query: 69  DPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPATG 128
            P  A   W PP  G  K NVDAA       TGIG + RDSAG+ V AA+    + P  G
Sbjct: 506 RPPEATPPWQPPAAGDLKLNVDAAVDATRKITGIGAVVRDSAGV-VRAAL----AKPIIG 565

Query: 129 IGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELR--------YTDVVVE 188
                 +     +  ++++V L L+ P A +    D L +A  +R        Y+D++++
Sbjct: 566 -NFASHEMEAKAIFYSLNWV-LQLQMPIAIVET--DALLVANAIRNGSSAITSYSDLIID 625

Query: 189 SDSLMAVKFVRKEALICGVVWKAFIADILAKRAKMSKSSISSVENFPAWLYSLVE 235
             SL++  F  +  ++        +A ILAK A     + S +E+ P   YS+++
Sbjct: 626 VISLLS--FFPQVNVVHAKRSTNMVAHILAKFALWVDETCSWLEDLPLSFYSVID 669

[Close]

BLAST of Lag0036908.1 vs. ExPASy TrEMBL
Match: Q2QNX8 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g36390 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-11
Identity = 48/192 (25.00%), Postives = 86/192 (44.79%), Query Frame = 0


Query: 15   VTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR--------R 74
            ++ W IW  RN++ HD+A PP+EV  +++  Y+    E K++    + + +        +
Sbjct: 960  MSLWRIWYTRNEITHDKAAPPVEVSKRFVRSYVNSLKEIKARPNANLGSGKHVIGEDRPK 1019

Query: 75   NDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPAT 134
                + +  W  PP+G  K NVD ++              D+ G                
Sbjct: 1020 CKKQSVLAKWEKPPSGWMKLNVDGSYQ------------EDNIG---------------- 1079

Query: 135  GIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAV 194
             I  I R+S G ++ AA  FV+      EAE+ A K+G+ LA++     +++ESD   A+
Sbjct: 1080 EISAILRNSTGDVIFAACGFVEQCQSALEAEILACKEGIGLALQWTLLPIIIESDCAEAL 1123

Query: 195  KFVRKEALICGV 199
            + +  E  +  V
Sbjct: 1140 QLILSEGKLRSV 1123

[Close]

BLAST of Lag0036908.1 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 52/186 (27.96%), Postives = 76/186 (40.86%), Query Frame = 0


Query: 12  LVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGA 71
           L A T W IW DRN   H  ++    +R  WI+ Y   + +A+    +    +    P  
Sbjct: 54  LAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSC 113

Query: 72  AIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILVGAAMHFVDSLPATGIGVI 131
               W PP +   K N DAA                                 +TG+G+I
Sbjct: 114 R---WLPPRDSAMKVNSDAACRS-----------------------------TSTGLGLI 173

Query: 132 GRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRK 191
            RD  G+L+ A   F+ + L    AE+R I + L LA    YT +VVESD   A++ V+ 
Sbjct: 174 IRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQG 207

Query: 192 EALICG 198
           +    G
Sbjct: 234 DLFSMG 207

The following BLAST results are available for this feature:

BLAST of Lag0036908.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	5.7e-15	30.15	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022158489.1	2.9e-11	32.61	uncharacterized protein LOC111024968 [Momordica charantia]	[more]
XP_023874626.1	6.5e-11	27.20	uncharacterized protein LOC111987155 [Quercus suber]	[more]
XP_023880941.1	6.5e-11	27.75	uncharacterized protein LOC111993328 [Quercus suber]	[more]
ABA98898.1	1.1e-10	25.00	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]

BLAST of Lag0036908.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0036908.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	2.8e-15	30.15	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DZK3	1.4e-11	32.61	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803QHU3	2.4e-11	28.94	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
Q2QNX8	5.4e-11	25.00	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
A0A6J1BQ49	1.2e-10	27.96	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of Lag0036908.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 123..209 e-value: 2.5E-11 score: 43.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 82..231 e-value: 1.0E-5 score: 27.6
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 67..205
None	No IPR available	PANTHER	PTHR47074:SF17	PUTATIVE-RELATED	coord: 67..205
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 87..216 e-value: 2.85026E-8 score: 48.8496

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0036908	Lag0036908	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0036908.1.exon2	Lag0036908.1.exon2	exon
Lag0036908.1.exon1	Lag0036908.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0036908.1	cds.Lag0036908.1_2	CDS
cds.Lag0036908.1	cds.Lag0036908.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0036908.1	Lag0036908.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity