Lag0034333.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034333.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 6391216 .. 6391727 (-)
Sequence length	420
RNA-Seq Expression	Lag0034333.1
Synteny	Lag0034333.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGATGATGAACTCACAGGGGATGGCTCTGGCCACCGCCATGGCTGCAGTCTCCGGCACTGTAATTCTTCTCTCTTTTTGCATCCAAAAATCCATCCCAATTCACCAAACCCACCACTTCTCAACTCCAACTCTTCGCTCCTGTATTCCTTCTGGTGAGTATTCATTCAAAAACAACCCATCAATAATTATTCTTCTCTAATAATTTCTCTTTACTTTCCACCTAACCAATTCTCTCTTCTTTCAGACACCAGGAAGAAGAATAAGAAGAAGCACAATCACAAAAAGAAAGTTCATTTTGCAAAGGACGTCGTCGATCCGATTGGCAACGGCGAGGATTTTCGAAGAAGGCAACACGAAATCGCTTCGAACGCTAATTCTCCCTCGTCGCTCACCGCCGCTTCCCCGCCGCAAAAGCCCGCCGGAGACAGAGGAATGCCGGCCAACAGAGTCGCGCTCTACAACGGGATTTTGAGAGATCGCGTCGTTCATCGATACTCTTGTTGA

mRNA sequence

ATGTCGTCGATGATGAACTCACAGGGGATGGCTCTGGCCACCGCCATGGCTGCAGTCTCCGGCACTGTAATTCTTCTCTCTTTTTGCATCCAAAAATCCATCCCAATTCACCAAACCCACCACTTCTCAACTCCAACTCTTCGCTCCTGTATTCCTTCTGACACCAGGAAGAAGAATAAGAAGAAGCACAATCACAAAAAGAAAGTTCATTTTGCAAAGGACGTCGTCGATCCGATTGGCAACGGCGAGGATTTTCGAAGAAGGCAACACGAAATCGCTTCGAACGCTAATTCTCCCTCGTCGCTCACCGCCGCTTCCCCGCCGCAAAAGCCCGCCGGAGACAGAGGAATGCCGGCCAACAGAGTCGCGCTCTACAACGGGATTTTGAGAGATCGCGTCGTTCATCGATACTCTTGTTGA

Coding sequence (CDS)

ATGTCGTCGATGATGAACTCACAGGGGATGGCTCTGGCCACCGCCATGGCTGCAGTCTCCGGCACTGTAATTCTTCTCTCTTTTTGCATCCAAAAATCCATCCCAATTCACCAAACCCACCACTTCTCAACTCCAACTCTTCGCTCCTGTATTCCTTCTGACACCAGGAAGAAGAATAAGAAGAAGCACAATCACAAAAAGAAAGTTCATTTTGCAAAGGACGTCGTCGATCCGATTGGCAACGGCGAGGATTTTCGAAGAAGGCAACACGAAATCGCTTCGAACGCTAATTCTCCCTCGTCGCTCACCGCCGCTTCCCCGCCGCAAAAGCCCGCCGGAGACAGAGGAATGCCGGCCAACAGAGTCGCGCTCTACAACGGGATTTTGAGAGATCGCGTCGTTCATCGATACTCTTGTTGA

Protein sequence

MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQTHHFSTPTLRSCIPSDTRKKNKKKHNHKKKVHFAKDVVDPIGNGEDFRRRQHEIASNANSPSSLTAASPPQKPAGDRGMPANRVALYNGILRDRVVHRYSC

Homology

[Close]

BLAST of Lag0034333.1 vs. NCBI nr
Match: XP_038879742.1 (uncharacterized protein LOC120071499 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-46
Identity = 117/146 (80.14%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQTHHFSTPTLRSCIPSDTRKKNK 60
           MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQ   FS PTLRSCIPSDTRKK K
Sbjct: 1   MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQ---FSPPTLRSCIPSDTRKKKK 60

Query: 61  KKHNHKKKVHFAKDVVDPIGNGEDFRRRQHEIASNAN--SPSSLTAASPPQKP---AGDR 120
               HKK+VHFAKDVVDPIGNGEDFRRR HEIA N N  S SS +++ PPQ P   A D 
Sbjct: 61  ----HKKRVHFAKDVVDPIGNGEDFRRR-HEIAWNNNYSSSSSSSSSLPPQNPSAAAVDP 120

Query: 121 GMPANRVALYNGILRDRVVHR--YSC 140
           GMPANRVALYNGILRDRVVHR  YSC
Sbjct: 121 GMPANRVALYNGILRDRVVHRHAYSC 138

[Close]

BLAST of Lag0034333.1 vs. NCBI nr
Match: XP_022933375.1 (uncharacterized protein LOC111440802 [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-46
Identity = 110/139 (79.14%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQTHHFSTPTLRSCIPSDT-RKKN 60
           MSSMMNSQGMALATAMAAVSGTVILLS+CIQKSIPIHQTHHFS P LRSCIPS+T +KK 
Sbjct: 1   MSSMMNSQGMALATAMAAVSGTVILLSYCIQKSIPIHQTHHFSPPVLRSCIPSETSKKKK 60

Query: 61  KKKHNHKKKVHFAKDVVDPIGNGEDFRRRQHEIASNANSPSSLTAASPPQKPAGDRGMPA 120
           KKK + KK+VHFAKDVVDPIGNGEDF RRQHEIA          AASPPQK A   GMPA
Sbjct: 61  KKKQSQKKRVHFAKDVVDPIGNGEDF-RRQHEIA----------AASPPQKAA---GMPA 120

Query: 121 NRVALYNGILRDRVVHRYS 139
           NR ALYN ILRDRVVHRY+
Sbjct: 121 NRAALYNRILRDRVVHRYT 125

[Close]

BLAST of Lag0034333.1 vs. NCBI nr
Match: XP_023531515.1 (uncharacterized protein LOC111793727 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-46
Identity = 110/139 (79.14%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQTHHFSTPTLRSCIPSDT-RKKN 60
           MSSMMNSQGMALATAMAAVSGTVILLS+CIQKSIPIHQTHHFS P LRSCIPS+T +KK 
Sbjct: 13  MSSMMNSQGMALATAMAAVSGTVILLSYCIQKSIPIHQTHHFSPPVLRSCIPSETSKKKK 72

Query: 61  KKKHNHKKKVHFAKDVVDPIGNGEDFRRRQHEIASNANSPSSLTAASPPQKPAGDRGMPA 120
           KKK + KK+VHFAKDVVDPIGNGEDF RRQHEIA          AASPPQK A   GMPA
Sbjct: 73  KKKQSQKKRVHFAKDVVDPIGNGEDF-RRQHEIA----------AASPPQKAA---GMPA 132

Query: 121 NRVALYNGILRDRVVHRYS 139
           NR ALYN ILRDRVVHRY+
Sbjct: 133 NRAALYNRILRDRVVHRYT 137

[Close]

BLAST of Lag0034333.1 vs. NCBI nr
Match: KAG7021784.1 (hypothetical protein SDJN02_15511 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.9 bits (494), Expect = 4.6e-46
Identity = 110/140 (78.57%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQTHHFSTPTLRSCIPSDT--RKK 60
           MSSMMNSQGMALATAMAAVSGTVILLS+CIQKSIPIHQTHHFS P LRSCIPS+T  +KK
Sbjct: 1   MSSMMNSQGMALATAMAAVSGTVILLSYCIQKSIPIHQTHHFSPPVLRSCIPSETSKKKK 60

Query: 61  NKKKHNHKKKVHFAKDVVDPIGNGEDFRRRQHEIASNANSPSSLTAASPPQKPAGDRGMP 120
            KKK + KK+VHFAKDVVDPIGNGEDF RRQHEIA          AASPPQK A   GMP
Sbjct: 61  KKKKQSQKKRVHFAKDVVDPIGNGEDF-RRQHEIA----------AASPPQKAA---GMP 120

Query: 121 ANRVALYNGILRDRVVHRYS 139
           ANR ALYN ILRDRVVHRY+
Sbjct: 121 ANRAALYNRILRDRVVHRYT 126

[Close]

BLAST of Lag0034333.1 vs. NCBI nr
Match: XP_022971983.1 (uncharacterized protein LOC111470637 [Cucurbita maxima])

HSP 1 Score: 194.1 bits (492), Expect = 7.9e-46
Identity = 109/139 (78.42%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MSSMMNSQGMALATAMAAVSGTVILLSFCIQKSIPIHQTHHFSTPTLRSCIPSDT-RKKN 60
           MSSMMNSQGMALATAMAAVSGTVI+LS+CIQKSIPIHQTHHFS P LRSCIPS+T +KK 
Sbjct: 13  MSSMMNSQGMALATAMAAVSGTVIILSYCIQKSIPIHQTHHFSPPVLRSCIPSETSKKKK 72

Query: 61  KKKHNHKKKVHFAKDVVDPIGNGEDFRRRQHEIASNANSPSSLTAASPPQKPAGDRGMPA 120
           KKK + KK+VHFAKDVVDPIGNGEDF RRQHEIA          AASPPQK A   GMPA
Sbjct: 73  KKKQSQKKRVHFAKDVVDPIGNGEDF-RRQHEIA----------AASPPQKVA---GMPA 132

Query: 121 NRVALYNGILRDRVVHRYS 139
           NR ALYN ILRDRVVHRY+
Sbjct: 133 NRAALYNRILRDRVVHRYT 137

The following BLAST results are available for this feature:

BLAST of Lag0034333.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879742.1	2.1e-46	80.14	uncharacterized protein LOC120071499 [Benincasa hispida]	[more]
XP_022933375.1	3.5e-46	79.14	uncharacterized protein LOC111440802 [Cucurbita moschata]	[more]
XP_023531515.1	3.5e-46	79.14	uncharacterized protein LOC111793727 [Cucurbita pepo subsp. pepo]	[more]
KAG7021784.1	4.6e-46	78.57	hypothetical protein SDJN02_15511 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022971983.1	7.9e-46	78.42	uncharacterized protein LOC111470637 [Cucurbita maxima]	[more]

BLAST of Lag0034333.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..69
None	No IPR available	PANTHER	PTHR33564:SF11	OS06G0604600 PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR33564	TRANSMEMBRANE PROTEIN	coord: 1..139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0034333	Lag0034333	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0034333.1.exon2	Lag0034333.1.exon2	exon
Lag0034333.1.exon1	Lag0034333.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0034333.1	cds.Lag0034333.1_2	CDS
cds.Lag0034333.1	cds.Lag0034333.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0034333.1	Lag0034333.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane