Lag0033022.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033022.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutamate receptor 3.6
Location	chr11: 40048649 .. 40049020 (+)
Sequence length	372
RNA-Seq Expression	Lag0033022.1
Synteny	Lag0033022.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGATGAAAATTCTTCATCCTCTTCTTCTGCAGCCGTCTCAGCTTCGGTTCCATCAGCTGCAAATATTGTTAGTTCTTCGTTTGGTCATCCGCTCAGCACAGTTCTCACAGTAAAGCTGGATGAGAACAATTATTTACTGTGGAGAGGAATGGTCCTTGCCATTTTGCGAGGTCAAAACGTCGATGGGTTCATTCTGGGAACAAAGGCTCAACCATCTGAGTTTATCGAAGTCACTACAGAAACTGGTAAACAACTTGAACCAAATCCCTTGTACGAAGAATGGACTACGGTTGATCAGGCATTATCTGGTTGGCTGTTTGGATCCATGCACGACTCCTGTCATTGCCTCGAATGTTGCGAGCTTTAA

mRNA sequence

ATGGGTGATGAAAATTCTTCATCCTCTTCTTCTGCAGCCGTCTCAGCTTCGGTTCCATCAGCTGCAAATATTGTTAGTTCTTCGTTTGGTCATCCGCTCAGCACAGTTCTCACAGTAAAGCTGGATGAGAACAATTATTTACTGTGGAGAGGAATGGTCCTTGCCATTTTGCGAGGTCAAAACGTCGATGGGTTCATTCTGGGAACAAAGGCTCAACCATCTGAGTTTATCGAAGTCACTACAGAAACTGGTAAACAACTTGAACCAAATCCCTTGTACGAAGAATGGACTACGGTTGATCAGGCATTATCTGGTTGGCTGTTTGGATCCATGCACGACTCCTGTCATTGCCTCGAATGTTGCGAGCTTTAA

Coding sequence (CDS)

ATGGGTGATGAAAATTCTTCATCCTCTTCTTCTGCAGCCGTCTCAGCTTCGGTTCCATCAGCTGCAAATATTGTTAGTTCTTCGTTTGGTCATCCGCTCAGCACAGTTCTCACAGTAAAGCTGGATGAGAACAATTATTTACTGTGGAGAGGAATGGTCCTTGCCATTTTGCGAGGTCAAAACGTCGATGGGTTCATTCTGGGAACAAAGGCTCAACCATCTGAGTTTATCGAAGTCACTACAGAAACTGGTAAACAACTTGAACCAAATCCCTTGTACGAAGAATGGACTACGGTTGATCAGGCATTATCTGGTTGGCTGTTTGGATCCATGCACGACTCCTGTCATTGCCTCGAATGTTGCGAGCTTTAA

Protein sequence

MGDENSSSSSSAAVSASVPSAANIVSSSFGHPLSTVLTVKLDENNYLLWRGMVLAILRGQNVDGFILGTKAQPSEFIEVTTETGKQLEPNPLYEEWTTVDQALSGWLFGSMHDSCHCLECCEL

Homology

[Close]

BLAST of Lag0033022.1 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 6   SSSSSSAAVSASVPSAANIVSSSFGHPLSTVLTVKLDENNYLLWRGMVLAILRGQNVDGF 65
           S S+++ +  A+V SA NI   SFGHPLST LTVKLD+ NY LW+GMVLA+L GQ VDG+
Sbjct: 7   SGSTTNNSQQATVFSAINI---SFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGY 66

Query: 66  ILGTKAQPSEFIEVTTETGKQLEP--NPLYEEWTTVDQALSGWLFGSMHDS 115
           +L TK  PS++   T++TG  LEP  NP YEEW+ VDQA  GWLFGSM  S
Sbjct: 67  VLRTKTCPSKYTTTTSDTG-MLEPTLNPAYEEWSAVDQAFCGWLFGSMTPS 113

[Close]

BLAST of Lag0033022.1 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 4   ENSSSSSSAAVSASV--PSAANIVSSSFGHPLSTVLTVKLDENNYLLWRGMVLAILRGQN 63
           ENSS       + +V  P+ +   ++SFGHPL TVLTVKLD+ NY LWRGMVLA+LRGQ 
Sbjct: 7   ENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQK 66

Query: 64  VDGFILGTKAQPSEFI--EVTTETGKQLEPNPLYEEWTTVDQALSGWLFGSMHDSCHC 118
            DG++LGT A+P +F+    T  T   L+ NP Y EW  VDQAL GWLFGSM  S  C
Sbjct: 67  FDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIAC 124

[Close]

BLAST of Lag0033022.1 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 4   ENSSSSSSAAVSASV--PSAANIVSSSFGHPLSTVLTVKLDENNYLLWRGMVLAILRGQN 63
           ENSS       + +V  P+ +   ++SFGHPL TVLTVKLD+ NY LWRGMVLA+LRGQ 
Sbjct: 7   ENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQK 66

Query: 64  VDGFILGTKAQPSEFI--EVTTETGKQLEPNPLYEEWTTVDQALSGWLFGSMHDSCHC 118
            DG++LGT A+P +F+    T  T   L+ NP Y EW  VDQAL GWLFGSM  S  C
Sbjct: 67  FDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIAC 124

[Close]

BLAST of Lag0033022.1 vs. NCBI nr
Match: XP_022842004.1 (uncharacterized protein LOC111365701 [Olea europaea var. sylvestris])

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-14
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 29  FGHPLSTVLTVKLDENNYLLWRGMVLAILRGQNVDGFILGTKAQPSEFI--EVTTETGKQ 88
           FG  L+ ++++KLD+NN+LLW+ M+L I+RG N++G ILGTK  P EFI  + T E G  
Sbjct: 14  FGVNLTQMVSMKLDKNNFLLWKNMILPIIRGHNLEGHILGTKLCPLEFISTQTTGEAGAS 73

Query: 89  LE--PNPLYEEWTTVDQALSGWLFGSM 112
           ++   NP Y +W  +DQ L GWL+ SM
Sbjct: 74  VKVTQNPQYSQWMFIDQLLIGWLYSSM 100

[Close]

BLAST of Lag0033022.1 vs. NCBI nr
Match: TXG59671.1 (hypothetical protein EZV62_014244 [Acer yangbiense])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 7   SSSSSAAVSASVPSAANIVSSSFGHPLSTVLTVKLDENNYLLWRGMVLAILRGQNVDGFI 66
           +SSS+A +    PS  + + + FG+ +     +KLD NNY LW+ MV  +++G  +DG++
Sbjct: 50  ASSSTAPMMTQQPSVVSSI-TPFGNSMGKSFAIKLDRNNYTLWKTMVTTVIKGHRLDGYL 109

Query: 67  LGTKAQPSEFI--EVTTE--TGKQLEPNPLYEEWTTVDQALSGWLFGSMHDS 115
            GT+  P EFI  E+T +  TG  L  NP YE+W   D  L GWL+GSM +S
Sbjct: 110 FGTRPCPPEFIPTEITAQGATGFGLRLNPNYEQWVVNDHLLMGWLYGSMTES 160

The following BLAST results are available for this feature:

BLAST of Lag0033022.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143579.1	1.7e-23	59.46	ankyrin repeat-containing protein NPR4-like [Momordica charantia]	[more]
XP_022157748.1	2.4e-22	54.24	uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]	[more]
XP_022157750.1	2.4e-22	54.24	uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]	[more]
XP_022842004.1	5.4e-14	48.28	uncharacterized protein LOC111365701 [Olea europaea var. sylvestris]	[more]
TXG59671.1	2.0e-13	41.07	hypothetical protein EZV62_014244 [Acer yangbiense]	[more]

BLAST of Lag0033022.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 37..73 e-value: 1.8E-5 score: 24.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0033022	Lag0033022	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0033022.1.exon1	Lag0033022.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0033022.1	cds.Lag0033022.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0033022.1	Lag0033022.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane