Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCCCTCGAAATTGAATCAGATTCCATGGAAGTGATCAATATGCTTAACGGAGTTTCAAAAGACATCATGGAGACGAAGAATTTAATCGACTCCATCATCACGACCTTCTCTCGCTTAGCTTTGGTCTCTTTTAGTCATTATAGAAGAGACTTCAACACAGTCACCCACTTTGTTGCTAAGCTCGCTTGCTCTCCTTCGTTTTTGTTTCACCAAGCAAGAATTTGGGCATGCGTATGCGTTCAAACTTTTGATCTCGACCGTCAATGGTACATGTCAATTACCACTGATAGCTATGCTCATTTTGACATTAATTAGGGTAGTTTCAATCCTCTCCCTACAAAAAAAAAAAATCATGTGTTAATAGTTCACTACATGTTTAACTATATATGTATATATATATATTTTTTTTGAGTAGATCAAACATTTGGGGTGGGGGATTCGAACCTCTGACCTCATGGTCGAGAGTACATGCCAATTACCGCTAAGCTAAGCTCTCTTTGGCACTACATGCTTAACTATATGAAACTTCCAACAATATATCTTTGATCATAACTGAACTCCCATGAGCCGTCTATCTTAATTTGTTGTATTGAATAGGTCTTCTGCTCAAGGGTGATATAGGACCAATTTGGTCCTATATATTTAGTCCTAATCATGCTAGTTTTATAATTAATTATGTGCTTAATTATATTATTTTGTAGGTATTTGGTGTTAAAGCTTCTCTGGAACATTTTGGAGCAAAAAAAGACTTAAAATGAGCAAATTAGGAGCATCGAGGGCAAAAAGTGAAGTGGAGCCAACCTACACGAGAGGGTAACATTGAGACGTTGTCACAGTAACGTCTCAACGCTGGAAAATATCACAGCACGCTGGGATTACACGCAACGCCAAGATGCTAACCTAAGAGCGTCTCGACACTGCCTTGATTTTTCAGAAAACATGCGGACAGAAGGCATAGCATCAAGACGCTATGCCCAAGCGTCTCGACACTCCGTAGGATTTAAAAGCCACTTTTCCGATTTTTAG mRNA sequence ATGCCCCTCGAAATTGAATCAGATTCCATGGAAGTGATCAATATGCTTAACGGAGTTTCAAAAGACATCATGGAGACGAAGAATTTAATCGACTCCATCATCACGACCTTCTCTCGCTTAGCTTTGGTCTCTTTTAGTCATTATAGAAGAGACTTCAACACAGTCACCCACTTTGTTGCTAAGCTCGCTTGCTCTCCTTCGTTTTTGTTTCACCAAGCAAGAATTTGGGCATGCGTATGCGTTCAAACTTTTGATCTCGACCGTCAATGTAACGTCTCAACGCTGGAAAATATCACAGCACGCTGGGATTACACGCAACGCCAAGATGCTAACCTAAGAGCGTCTCGACACTGCCTTGATTTTTCAGAAAACATGCGGACAGAAGGCATAGCATCAAGACGCTATGCCCAAGCGTCTCGACACTCCGTAGGATTTAAAAGCCACTTTTCCGATTTTTAG Coding sequence (CDS) ATGCCCCTCGAAATTGAATCAGATTCCATGGAAGTGATCAATATGCTTAACGGAGTTTCAAAAGACATCATGGAGACGAAGAATTTAATCGACTCCATCATCACGACCTTCTCTCGCTTAGCTTTGGTCTCTTTTAGTCATTATAGAAGAGACTTCAACACAGTCACCCACTTTGTTGCTAAGCTCGCTTGCTCTCCTTCGTTTTTGTTTCACCAAGCAAGAATTTGGGCATGCGTATGCGTTCAAACTTTTGATCTCGACCGTCAATGTAACGTCTCAACGCTGGAAAATATCACAGCACGCTGGGATTACACGCAACGCCAAGATGCTAACCTAAGAGCGTCTCGACACTGCCTTGATTTTTCAGAAAACATGCGGACAGAAGGCATAGCATCAAGACGCTATGCCCAAGCGTCTCGACACTCCGTAGGATTTAAAAGCCACTTTTCCGATTTTTAG Protein sequence MPLEIESDSMEVINMLNGVSKDIMETKNLIDSIITTFSRLALVSFSHYRRDFNTVTHFVAKLACSPSFLFHQARIWACVCVQTFDLDRQCNVSTLENITARWDYTQRQDANLRASRHCLDFSENMRTEGIASRRYAQASRHSVGFKSHFSDF
Homology
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002156 | Ribonuclease H domain | PFAM | PF13456 | RVT_3 | coord: 2..63
e-value: 2.4E-8
score: 33.8 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Lag0032835 | Lag0032835 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Lag0032835.1.exon1 | Lag0032835.1.exon1 | exon |
| Lag0032835.1.exon2 | Lag0032835.1.exon2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| cds.Lag0032835.1 | cds.Lag0032835.1 | CDS |
| cds.Lag0032835.1 | cds.Lag0032835.1_2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Lag0032835.1 | Lag0032835.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
|
