Lag0029648.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0029648.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptioncell division control protein 48 homolog C-like
Locationchr8: 40846741 .. 40847190 (-)
Sequence length450
RNA-Seq ExpressionLag0029648.1
SyntenyLag0029648.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGCCGCGGATTGCTCTCCGTCGAGTACCGAAGTAATATTCGTGAGCGGATTAAGTCTTGCCGGCACAAGTTCCTTACCGTCGGCGCCATTGTCGACCATCTCCACTTCACTTACAGAGACTACAGGGAGCTCAAGAAACTGACACTCATCGAACTCGTCCAAGATACTATAGACGAGCTTGACGAAAAAGAGCAGCCAATCCACTCAGTTTTCTTCAAGAAAGCGCCAACCAGAGCAATTCGAAGCGGAAGACGCAAGAAAGAGGCCCAAGCACAAAGAGATTATGATTATGATTCATTTTCGTCTTCGTATTCGTCGTACTCGTCGTATTGGGGGAATGAAGCGAATGTGATGAAAGAAGCATCGAGGAGTTGTTTGAATCGGGAAGAAAGAGGGCCTAGGTTTAGGGATTTGGGGGGAATGAGGGGGTGGTGGAGGACTTGA

mRNA sequence

ATGGCCGGCCGCGGATTGCTCTCCGTCGAGTACCGAAGTAATATTCGTGAGCGGATTAAGTCTTGCCGGCACAAGTTCCTTACCGTCGGCGCCATTGTCGACCATCTCCACTTCACTTACAGAGACTACAGGGAGCTCAAGAAACTGACACTCATCGAACTCGTCCAAGATACTATAGACGAGCTTGACGAAAAAGAGCAGCCAATCCACTCAGTTTTCTTCAAGAAAGCGCCAACCAGAGCAATTCGAAGCGGAAGACGCAAGAAAGAGGCCCAAGCACAAAGAGATTATGATTATGATTCATTTTCGTCTTCGTATTCGTCGTACTCGTCGTATTGGGGGAATGAAGCGAATGTGATGAAAGAAGCATCGAGGAGTTGTTTGAATCGGGAAGAAAGAGGGCCTAGGTTTAGGGATTTGGGGGGAATGAGGGGGTGGTGGAGGACTTGA

Coding sequence (CDS)

ATGGCCGGCCGCGGATTGCTCTCCGTCGAGTACCGAAGTAATATTCGTGAGCGGATTAAGTCTTGCCGGCACAAGTTCCTTACCGTCGGCGCCATTGTCGACCATCTCCACTTCACTTACAGAGACTACAGGGAGCTCAAGAAACTGACACTCATCGAACTCGTCCAAGATACTATAGACGAGCTTGACGAAAAAGAGCAGCCAATCCACTCAGTTTTCTTCAAGAAAGCGCCAACCAGAGCAATTCGAAGCGGAAGACGCAAGAAAGAGGCCCAAGCACAAAGAGATTATGATTATGATTCATTTTCGTCTTCGTATTCGTCGTACTCGTCGTATTGGGGGAATGAAGCGAATGTGATGAAAGAAGCATCGAGGAGTTGTTTGAATCGGGAAGAAAGAGGGCCTAGGTTTAGGGATTTGGGGGGAATGAGGGGGTGGTGGAGGACTTGA

Protein sequence

MAGRGLLSVEYRSNIRERIKSCRHKFLTVGAIVDHLHFTYRDYRELKKLTLIELVQDTIDELDEKEQPIHSVFFKKAPTRAIRSGRRKKEAQAQRDYDYDSFSSSYSSYSSYWGNEANVMKEASRSCLNREERGPRFRDLGGMRGWWRT
Homology
[Close]
BLAST of Lag0029648.1 vs. NCBI nr
Match: XP_008447436.1 (PREDICTED: cell division control protein 48 homolog C-like [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 1  MAGRGLLSVEYRSNIRERIKSCRHKFLTVGAIVDHLHFTYRDYRELKKLTLIELVQDTID 60
          MAG    SV  R  + +RIKSCRHK  TV  IVDHL  TYRDYR LKKL    +VQ T++
Sbjct: 1  MAGGKSPSVVNRGLLLQRIKSCRHKCSTVDDIVDHLQSTYRDYRALKKLPFTSIVQQTLN 60

Query: 61 E 62
          +
Sbjct: 61 K 61

[Close]
BLAST of Lag0029648.1 vs. NCBI nr
Match: KAA0038084.1 (cell division control protein 48-like protein C-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 1  MAGRGLLSVEYRSNIRERIKSCRHKFLTVGAIVDHLHFTYRDYRELKKLTLIELVQDTID 60
          MAG    SV  R  + +RIKSCRHK  TV  IVDHL  TYRDYR LKKL    +VQ T++
Sbjct: 1  MAGGKSPSVVNRGLLLQRIKSCRHKCSTVDDIVDHLQSTYRDYRALKKLPFTSIVQQTLN 60

Query: 61 E 62
          +
Sbjct: 61 K 61

[Close]
BLAST of Lag0029648.1 vs. NCBI nr
Match: TYK20523.1 (cell division control protein 48-like protein C-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 1  MAGRGLLSVEYRSNIRERIKSCRHKFLTVGAIVDHLHFTYRDYRELKKLTLIELVQDTID 60
          MAG    SV  R  + +RIKSCRHK  TV  IVDHL  TYRDYR LKKL    +VQ T++
Sbjct: 1  MAGGKSPSVVNRGLLLQRIKSCRHKCSTVDDIVDHLQSTYRDYRALKKLPFTSIVQQTLN 60

Query: 61 E 62
          +
Sbjct: 61 K 61

[Close]
BLAST of Lag0029648.1 vs. NCBI nr
Match: XP_038882465.1 (cell division control protein 48 homolog C [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 35/60 (58.33%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 1  MAGRGLLSVEYRSNIRERIKSCRHKFLTVGAIVDHLHFTYRDYRELKKLTLIELVQDTID 60
          MAG    SV  R  + +RIKSCRHK  TV  IVDHL  TYRDYR LKK     +VQ TID
Sbjct: 1  MAGGRSPSVLNRGFLLQRIKSCRHKCPTVDDIVDHLQSTYRDYRGLKKSPFTSIVQQTID 60

[Close]
BLAST of Lag0029648.1 vs. NCBI nr
Match: XP_004146387.1 (cell division control protein 48 homolog C [Cucumis sativus] >XP_031740112.1 cell division control protein 48 homolog C [Cucumis sativus] >XP_031740113.1 cell division control protein 48 homolog C [Cucumis sativus] >KGN54806.1 hypothetical protein Csa_012658 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 1  MAGRGLLSVEYRSNIRERIKSCRHKFLTVGAIVDHLHFTYRDYRELKKLTLIELVQDTID 60
          MAG    SV  R  + +RIKSCRHK  TV  IVDHL  TYRDYR LKK     +VQ T+D
Sbjct: 1  MAGGKSPSVVNRGFLLQRIKSCRHKCPTVDDIVDHLQSTYRDYRTLKKSPFTSIVQQTLD 60

The following BLAST results are available for this feature:
BLAST of Lag0029648.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447436.11.0e-0655.74PREDICTED: cell division control protein 48 homolog C-like [Cucumis melo][more]
KAA0038084.11.0e-0655.74cell division control protein 48-like protein C-like [Cucumis melo var. makuwa][more]
TYK20523.11.0e-0655.74cell division control protein 48-like protein C-like [Cucumis melo var. makuwa][more]
XP_038882465.11.7e-0658.33cell division control protein 48 homolog C [Benincasa hispida][more]
XP_004146387.11.7e-0656.67cell division control protein 48 homolog C [Cucumis sativus] >XP_031740112.1 cel... [more]
BLAST of Lag0029648.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0029648Lag0029648gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0029648.1.exon1Lag0029648.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0029648.1cds.Lag0029648.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0029648.1Lag0029648.1-proteinpolypeptide