Lag0029568.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029568.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3
Location	chr8: 40091399 .. 40092582 (+)
Sequence length	465
RNA-Seq Expression	Lag0029568.1
Synteny	Lag0029568.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCCACCCGTAATGGAGCTTCCCGTAATCAATGTCTTTCACCCATTGCTCCGTTCCTCCTTATGCCCATGCCCTTATTCTTCAATTCGTAGTCTCTTCTTTCACCGCAGGAAGATGTTTCTCAGGTTGTCTGGCTATCAGAATTTTTACCCATCACTGCGTACTACAACGAATGGTTCTTTATCAAATGCTATCGGAAGGGCCAATAACGAGAAGGATTTATGGGATGATTATGAGTTCGTGGAGGTGATTGGCATTGGCAGTAGAAAGGAAGCCGTGCTTGATTTTTGTCTCGAGTCATCCCTCGCGATTTCATCTCTGCGATTTTGGTAATTTCAAGAAGTCTATGTGCTCAATTCTCTGTACAATGATAGGAAGTATTGATTTGCTTTTAGAATTTTGGTTGTTAATTGAGTTTCCATATGTTGCAAATAGTTCAAACTTCAATGGCATTCATTATTTTAGGTACCTGGAAAACTCAATTCTGAAAAATTCGACGTTATATGTTGTGAGGAGAAATTGATCTCATTTTTTATTTTTACTTTTTGCAGGCAAATTGTAAAGCACGATTCTCTAAAAGTGCAACTACTTCAGAGATTCGTTGAAAAAGGTTCTTTCACTCTTTCACTCTTTCAGCGGTTGATTTTCCATTTTAAGCTGTTTCCATACAGGATAGACTGTTCAACCAGAACATGCAATTGAGTTAGGGAAACTTCAAATTAACTTTTGTCTGTTATCTTTCGCTCGAAGGCCAACACAGTTAATAGATTAGTTCACCTTGAAATTACAAAATGTGAGTGGAACTTGCATTTATCTTAAATACACACCTTTAAGTCTCATCAAACATAATAAGGCTTCCAAATGCCAACAATTAGCTTCTTTTGTTTAGAAATTAAAAAAAAAAGTTTTAGGTTTTAAGCCTTGTTAAGAGAAAAGAGAAAGAGACAAGAAAAGGAAGAAATATTGTTTGCATGAGAGGGAGCTTTTTTTTTTTCCTCTGAATGAAAATTTAGTTAATCGACAAGGAGAAAGTAACGAAAAATAGAGCACCAATCATTTCTACAAGTAAACTGGGACTAGTTGATGATGGTGTTTGGATGGTCTTAGGCTCTCCTTTATGGAGGATTACAGAGGGTAATGCCATGAAAGGAGTGGTTCCTTTCTATGAAATCTCTCTTTAA

mRNA sequence

ATGGTGCCACCCGTAATGGAGCTTCCCGTAATCAATGTCTTTCACCCATTGCTCCGTTCCTCCTTATGCCCATGCCCTTATTCTTCAATTCGTAGTCTCTTCTTTCACCGCAGGAAGATGTTTCTCAGGTTGTCTGGCTATCAGAATTTTTACCCATCACTGCGTACTACAACGAATGGTTCTTTATCAAATGCTATCGGAAGGGCCAATAACGAGAAGGATTTATGGGATGATTATGAGTTCGTGGAGGTGATTGGCATTGGCAGTAGAAAGGAAGCCGTGCTTGATTTTTGTCTCGAGTCATCCCTCGCGATTTCATCTCTGCGATTTTGGCAAATTGTAAAGCACGATTCTCTAAAAGTGCAACTACTTCAGAGATTCGTTGAAAAAGGCTCTCCTTTATGGAGGATTACAGAGGGTAATGCCATGAAAGGAGTGGTTCCTTTCTATGAAATCTCTCTTTAA

Coding sequence (CDS)

ATGGTGCCACCCGTAATGGAGCTTCCCGTAATCAATGTCTTTCACCCATTGCTCCGTTCCTCCTTATGCCCATGCCCTTATTCTTCAATTCGTAGTCTCTTCTTTCACCGCAGGAAGATGTTTCTCAGGTTGTCTGGCTATCAGAATTTTTACCCATCACTGCGTACTACAACGAATGGTTCTTTATCAAATGCTATCGGAAGGGCCAATAACGAGAAGGATTTATGGGATGATTATGAGTTCGTGGAGGTGATTGGCATTGGCAGTAGAAAGGAAGCCGTGCTTGATTTTTGTCTCGAGTCATCCCTCGCGATTTCATCTCTGCGATTTTGGCAAATTGTAAAGCACGATTCTCTAAAAGTGCAACTACTTCAGAGATTCGTTGAAAAAGGCTCTCCTTTATGGAGGATTACAGAGGGTAATGCCATGAAAGGAGTGGTTCCTTTCTATGAAATCTCTCTTTAA

Protein sequence

MVPPVMELPVINVFHPLLRSSLCPCPYSSIRSLFFHRRKMFLRLSGYQNFYPSLRTTTNGSLSNAIGRANNEKDLWDDYEFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLKVQLLQRFVEKGSPLWRITEGNAMKGVVPFYEISL

Homology

[Close]

BLAST of Lag0029568.1 vs. NCBI nr
Match: XP_023550462.1 (protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 9.6e-53
Identity = 109/130 (83.85%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MVPPVMELPVINVFHPLLRSSLCPCPYSSIRSLFFHRRKMFLRLSGYQNFYPSLRTTTNG 60
           MVP + ELPVIN FHPLLRSSLCPCP SSIRSLFF RRKMFL L+GY+N YP L TT N 
Sbjct: 1   MVPLITELPVINGFHPLLRSSLCPCPCSSIRSLFFRRRKMFLGLAGYRNSYPFLSTTANS 60

Query: 61  SLSNAIGRANNEKDLWDDYEFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLK 120
           SLSNA GRAN EKD WDDYEFVEVIGIGSRKEAVLDFCLES+L ISSLRFWQIVKHDSLK
Sbjct: 61  SLSNAAGRANMEKDFWDDYEFVEVIGIGSRKEAVLDFCLESALRISSLRFWQIVKHDSLK 120

Query: 121 VQLLQRFVEK 131
           VQLLQRF+ K
Sbjct: 121 VQLLQRFIGK 130

[Close]

BLAST of Lag0029568.1 vs. NCBI nr
Match: XP_038907181.1 (protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-52
Identity = 106/130 (81.54%), Postives = 115/130 (88.46%), Query Frame = 0


Query: 1   MVPPVMELPVINVFHPLLRSSLCPCPYSSIRSLFFHRRKMFLRLSGYQNFYPSLRTTTNG 60
           M   +MELPVIN FHPLLRSSLCPCP SSIR+LFFHRRKMFLRL+ ++N YP L TT N 
Sbjct: 1   MASLIMELPVINGFHPLLRSSLCPCPCSSIRTLFFHRRKMFLRLAEHRNPYPFLHTTANS 60

Query: 61  SLSNAIGRANNEKDLWDDYEFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLK 120
           SLSNA GR+NNEKD WDDYEFVEVIGIGSRKEA+LDFCLES+L ISSLRFWQIVKHDSLK
Sbjct: 61  SLSNATGRSNNEKDFWDDYEFVEVIGIGSRKEAILDFCLESALRISSLRFWQIVKHDSLK 120

Query: 121 VQLLQRFVEK 131
           VQLLQR +EK
Sbjct: 121 VQLLQRLIEK 130

[Close]

BLAST of Lag0029568.1 vs. NCBI nr
Match: KAG7016680.1 (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.9 bits (546), Expect = 4.8e-52
Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MVPPVMELPVINVFHPLLRSSLCPCPYSSIRSLFFHRRKMFLRLSGYQNFYPSLRTTTNG 60
           M+P + ELPVIN FHPLLRSSLCPCP SSIRSLFF RRKMFL L+GY+N YP L TT N 
Sbjct: 1   MMPLITELPVINGFHPLLRSSLCPCPCSSIRSLFFRRRKMFLGLAGYRNSYPFLSTTANS 60

Query: 61  SLSNAIGRANNEKDLWDDYEFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLK 120
           SLSNA GRAN EKD WDDYEFVEVIGIGSRKEAVLDFCLES+L IS LRFWQIVKHDSLK
Sbjct: 61  SLSNAAGRANTEKDFWDDYEFVEVIGIGSRKEAVLDFCLESALRISCLRFWQIVKHDSLK 120

Query: 121 VQLLQRFVEK 131
           VQLLQRF+ K
Sbjct: 121 VQLLQRFIGK 130

[Close]

BLAST of Lag0029568.1 vs. NCBI nr
Match: XP_022992937.1 (protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 6.2e-52
Identity = 109/130 (83.85%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MVPPVMELPVINVFHPLLRSSLCPCPYSSIRSLFFHRRKMFLRLSGYQNFYPSLRTTTNG 60
           MVP V ELPVIN FHPLLRSSLCPC  SSIRSLFF RRKMFL L+GY+N YP L TT N 
Sbjct: 1   MVPLVTELPVINGFHPLLRSSLCPCSCSSIRSLFFPRRKMFLGLAGYRNSYPFLSTTANS 60

Query: 61  SLSNAIGRANNEKDLWDDYEFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLK 120
           SLSNA GRAN EKD WDDYEFVEVIGIGSRKEAVLDFCLES+L ISSLRFWQIVKHDSLK
Sbjct: 61  SLSNAAGRANTEKDFWDDYEFVEVIGIGSRKEAVLDFCLESALRISSLRFWQIVKHDSLK 120

Query: 121 VQLLQRFVEK 131
           VQLLQRF+ K
Sbjct: 121 VQLLQRFIGK 130

[Close]

BLAST of Lag0029568.1 vs. NCBI nr
Match: KAG6579164.1 (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 3.1e-51
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MVPPVMELPVINVFHPLLRSSLCPCPYSSIRSLFFHRRKMFLRLSGYQNFYPSLRTTTNG 60
           M+P + ELPVIN FHPLLRSSLCPCP SSIRSLFF RRKMFL L+GY+N YP   TT N 
Sbjct: 1   MMPLITELPVINGFHPLLRSSLCPCPCSSIRSLFFRRRKMFLGLAGYRNSYPFPSTTANS 60

Query: 61  SLSNAIGRANNEKDLWDDYEFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLK 120
           SLSNA GRAN EKD WDDYEFVEVIGIGSRKEAVLDFCLES+L IS LRFWQIVKHDSLK
Sbjct: 61  SLSNAAGRANTEKDFWDDYEFVEVIGIGSRKEAVLDFCLESALRISCLRFWQIVKHDSLK 120

Query: 121 VQLLQRFVEK 131
           VQLLQRF+ K
Sbjct: 121 VQLLQRFIGK 130

[Close]

BLAST of Lag0029568.1 vs. ExPASy Swiss-Prot
Match: Q6F6B5 (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 OS=Arabidopsis thaliana OX=3702 GN=ARC3 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-05
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 80  EFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLKVQLLQRFVEKGSPL 135
           EF+EV+ IGSRKE+++D CL+S      LRFW I K  S  + L QR   + + L
Sbjct: 75  EFIEVLVIGSRKESIMDSCLDSPFPSLPLRFWSISKDSSGGLVLQQRLNHQDNAL 129

The following BLAST results are available for this feature:

BLAST of Lag0029568.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550462.1	9.6e-53	83.85	protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Cucurbita pepo subsp. pe...	[more]
XP_038907181.1	2.1e-52	81.54	protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Benincasa hispida]	[more]
KAG7016680.1	4.8e-52	82.31	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Cucurbita argyrosperma s...	[more]
XP_022992937.1	6.2e-52	83.85	protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Cucurbita maxima]	[more]
KAG6579164.1	3.1e-51	81.54	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, partial [Cucurbita argyr...	[more]

BLAST of Lag0029568.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6F6B5	3.5e-05	45.45	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 OS=Arabidopsis thaliana O...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0029568	Lag0029568	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0029568.1.exon1	Lag0029568.1.exon1	exon
Lag0029568.1.exon2	Lag0029568.1.exon2	exon
Lag0029568.1.exon3	Lag0029568.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0029568.1	cds.Lag0029568.1	CDS
cds.Lag0029568.1	cds.Lag0029568.1_2	CDS
cds.Lag0029568.1	cds.Lag0029568.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0029568.1	Lag0029568.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0035452	extrinsic component of plastid membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0043621	protein self-association