Lag0027524.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027524.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GBBH-like_N domain-containing protein
Location	chr8: 1717630 .. 1719727 (+)
Sequence length	411
RNA-Seq Expression	Lag0027524.1
Synteny	Lag0027524.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCTTTGCATAAAGCTTTCCGGACGATCCATACCACCGTCGATGCTCCTCAAATTACCAGTTTCGCTCTTCGCGTCCCGAAATATGTAAGTCTTTCCTCCCCAAATCTTCGTTTAATTTTCCATCTGATTTCAATTCTGCTTCAGCATGCTCGTTATATCGATCCGTTCTGGATTTTTGATTTATGGGTTTTGTGTATATATTCGTTTGAGTGATTATAGAATGGTGAATCGGGACTGCCCATTTCATTTCGTCCTTGTGGAATCTTTTGTGGTTTTGGAAGCAGAATCTGTGACAAAAATCACATTGGAAAGCGCCATCATGTTAACGAAAGAGAAATGATAACTATCTAGTGTTCTTCTTAGCAAGTCATTATCCTAATAAGTTGATTTAACAGAAAATTGATTGCTCGATATCTCTCTTTGGAAAATGGGTTATGAATTTAGGATGCCCCCATTTTCATTAAGAAAGCAGTGACATAGATTTCATTAAGTTTCAAGCTCTGTTGGTGACGTGCAATTTTTCTTCATCATTTCAGTGGATGTGATAATTGATAAAGGCTTTGTGGCTAATTTCACGGCAGTTTCAGTGATTGAGATTGGATGCATACTGGATTACTTCTTGGAGACTTTGAAATCTTGAAAAGTTTATCAGTCAAAAATTTGGTTGAAAGTGGATAATACATTATATTTTTATAGCTTTGGTACTTTTCAGTTGTTTAAACTTGGGTGGATATGTTGTACGACATTCTTTCATCACTACTTCGTTAGGAGCATAACTTACTTTAGAAGTTGGTTTTGCTAAATGTTGTGATCTGCTATTTGTTTTCAATTTGTGAATATCTTTTTTTTTTTCTTTTTCACATACACTGTTTACTATGATGCAGTTCACTAAATGTTTCATTTTAGGTAGAGGTGAAATTTGCAGATGGAAGTGTGTTCAATTTGTCAGCTGAATTCTTGAGAATATATAGTCCAGCTGTTGATTCTAAGGTCCGAACAATTGGGGGTGAAAAGGTACTGGAGAAACAACTTTTAGATTCATTTATCTTTCTATCTGAAAATATGCTAATTCATCATAGGCTGGTCAAACAGGAAAATTGGATAGTCCACGTAACAGTAATTATCACCTGCCTAGGATATAAAGATTGAGTTTGGAATGGTTTTTAAGATTAGTGCTTTTAAATAAAACACTTCCTTTTAATGTTTGTGACTTGCGTTTCGACTTTGATTAATCTTTTTTTTAGATAAGCGACTTTGATTAATCTTATAAGACAACTATTTCAACATTTGATTGCCAAGGAAACCAAATAAGTGGCTACCATGATTTTCTTTGAATTATCTCTAAGCCCTTTACATTTTTTATTTTTCATTGGTCTTGATGATCACTAGGCTAACCCATGAAACACTTCTTTTATAAATACTTTTGGAAAACTTATCTAAAAAAAAAAAAAAATACTTTTGGAAAAAACATCAACCTTTCACCAGTTCAAAAGTCATACCATACTCACCCTGTACATCCTACAAGTTTTCTAGCCCTTTATAGAGATATCATTAGCCATGTTCTAGAATTACATGTATGGAGTATAATATAAGGGGTGTGCAATGGTTGGCCTTGGCCAAACCTGCTCACTTAGTACAATTTTATGTTTAGCCACATTCTCATGATCTGATGCTTCTGCTGATTTATTAATATCCAGAATATGGGGTGCTTTGTTTATCAGATTCAATCATTAAATGCATGATTTTGAAGTAGGTAATTTCTGGACGGCGTTATGTTGGTATCATGTCTGCAGAACCAGTTGGGAACTATGGGGTAAGGTACTTTGAAATTACTGGTTAATATGGGTGCTTCTGAATTCCAACTAATCTTTCTATATTGAATTGCTAGAAAATCTGCACGTACTGTTTTGGTCCTTGAAATTTGATGTTGCTTCAATTTGCTAGGATACTTTTTGATGACTTGCATAAAACTGGGATTTATTCATGGGATTATTTCTACCATCTTGGGAGCAACAAATTTACGCTCTTGAGAAATTATGTTAAAACACTGAAGAAGCACGGGCTGAGCCGAGATCCACCAAGGAGAAAATGA

mRNA sequence

ATGTTAGCTTTGCATAAAGCTTTCCGGACGATCCATACCACCGTCGATGCTCCTCAAATTACCAGTTTCGCTCTTCGCGTCCCGAAATATGTAGAGGTGAAATTTGCAGATGGAAGTGTGTTCAATTTGTCAGCTGAATTCTTGAGAATATATAGTCCAGCTGTTGATTCTAAGGTCCGAACAATTGGGGGTGAAAAGGTAATTTCTGGACGGCGTTATGTTGGTATCATGTCTGCAGAACCAGTTGGGAACTATGGGGTAAGGATACTTTTTGATGACTTGCATAAAACTGGGATTTATTCATGGGATTATTTCTACCATCTTGGGAGCAACAAATTTACGCTCTTGAGAAATTATGTTAAAACACTGAAGAAGCACGGGCTGAGCCGAGATCCACCAAGGAGAAAATGA

Coding sequence (CDS)

ATGTTAGCTTTGCATAAAGCTTTCCGGACGATCCATACCACCGTCGATGCTCCTCAAATTACCAGTTTCGCTCTTCGCGTCCCGAAATATGTAGAGGTGAAATTTGCAGATGGAAGTGTGTTCAATTTGTCAGCTGAATTCTTGAGAATATATAGTCCAGCTGTTGATTCTAAGGTCCGAACAATTGGGGGTGAAAAGGTAATTTCTGGACGGCGTTATGTTGGTATCATGTCTGCAGAACCAGTTGGGAACTATGGGGTAAGGATACTTTTTGATGACTTGCATAAAACTGGGATTTATTCATGGGATTATTTCTACCATCTTGGGAGCAACAAATTTACGCTCTTGAGAAATTATGTTAAAACACTGAAGAAGCACGGGCTGAGCCGAGATCCACCAAGGAGAAAATGA

Protein sequence

MLALHKAFRTIHTTVDAPQITSFALRVPKYVEVKFADGSVFNLSAEFLRIYSPAVDSKVRTIGGEKVISGRRYVGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYVKTLKKHGLSRDPPRRK

Homology

[Close]

BLAST of Lag0027524.1 vs. NCBI nr
Match: XP_022984013.1 (uncharacterized protein LOC111482460 isoform X1 [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 125/136 (91.91%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MLALHKAFRTIHTTVDAPQITSFALRVPKYVEVKFADGSVFNLSAEFLRIYSPAVDSKVR 60
           MLALH+AFRTIHTTVD+PQITSFALR PKYVEVKFADGSVFNLSAEFLR+YSPA D+KVR
Sbjct: 1   MLALHRAFRTIHTTVDSPQITSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61  TIGGEKVISGRRYVGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYV 120
           +IGGEKVISGRR+VGIMSAEPVGNYGVRILFDDLH+TGIYSWDYFYHLGSNKFT LRNYV
Sbjct: 61  SIGGEKVISGRRHVGIMSAEPVGNYGVRILFDDLHRTGIYSWDYFYHLGSNKFTFLRNYV 120

Query: 121 KTLKKHGLSRDPPRRK 137
           KTLKKHGLSRDPP+RK
Sbjct: 121 KTLKKHGLSRDPPKRK 136

[Close]

BLAST of Lag0027524.1 vs. NCBI nr
Match: XP_022935010.1 (uncharacterized protein LOC111442002 isoform X1 [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 6.7e-66
Identity = 124/136 (91.18%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MLALHKAFRTIHTTVDAPQITSFALRVPKYVEVKFADGSVFNLSAEFLRIYSPAVDSKVR 60
           MLAL +AFRTIHTTVDAPQ+TSFALR PKYVEVKFADGSVFNLSAEFLR+YSPA D+KVR
Sbjct: 1   MLALQRAFRTIHTTVDAPQVTSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61  TIGGEKVISGRRYVGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYV 120
           +IGGEKVISGRR+VGIMSAEPVGNYGVRILFDDLH+TGIYSWDYFYHLGSNKFT LRNYV
Sbjct: 61  SIGGEKVISGRRHVGIMSAEPVGNYGVRILFDDLHRTGIYSWDYFYHLGSNKFTFLRNYV 120

Query: 121 KTLKKHGLSRDPPRRK 137
           KTLKKHGLSRDPP+RK
Sbjct: 121 KTLKKHGLSRDPPKRK 136

[Close]

BLAST of Lag0027524.1 vs. NCBI nr
Match: XP_022154140.1 (uncharacterized protein LOC111021468 isoform X1 [Momordica charantia])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 122/135 (90.37%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 2   LALHKAFRTIHTTVDAPQITSFALRVPKYVEVKFADGSVFNLSAEFLRIYSPAVDSKVRT 61
           +ALH+AFRTIHTTV+AP++TSFALR PK+VEVKFADGS+FNLSAEFLRIYSPAVD+KVR+
Sbjct: 1   MALHRAFRTIHTTVEAPRLTSFALRAPKFVEVKFADGSLFNLSAEFLRIYSPAVDAKVRS 60

Query: 62  IGGEKVISGRRYVGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYVK 121
           IGGEKVISGRR+VGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYV+
Sbjct: 61  IGGEKVISGRRHVGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYVR 120

Query: 122 TLKKHGLSRDPPRRK 137
           TL+KHGLSRDPPRRK
Sbjct: 121 TLQKHGLSRDPPRRK 135

[Close]

BLAST of Lag0027524.1 vs. NCBI nr
Match: KAG7017806.1 (hypothetical protein SDJN02_19672 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.7e-65
Identity = 124/136 (91.18%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MLALHKAFRTIHTTVDAPQITSFALRVPKYVEVKFADGSVFNLSAEFLRIYSPAVDSKVR 60
           MLAL +AFRTIHTTVDAPQITSFALR PK VEVKFADGSVFNLSAEFLR+YSPA D+KVR
Sbjct: 1   MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61  TIGGEKVISGRRYVGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYV 120
           +IGGEKVISGRR+VGIMSAEPVGNYGVRILFDDLH+TGIYSWDYFYHLGSNKFT LRNYV
Sbjct: 61  SIGGEKVISGRRHVGIMSAEPVGNYGVRILFDDLHRTGIYSWDYFYHLGSNKFTFLRNYV 120

Query: 121 KTLKKHGLSRDPPRRK 137
           KTLKKHGLSRDPP+RK
Sbjct: 121 KTLKKHGLSRDPPKRK 136

[Close]

BLAST of Lag0027524.1 vs. NCBI nr
Match: XP_031737737.1 (uncharacterized protein LOC101219823 isoform X1 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-64
Identity = 120/136 (88.24%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MLALHKAFRTIHTTVDAPQITSFALRVPKYVEVKFADGSVFNLSAEFLRIYSPAVDSKVR 60
           ML LH+ FRTIHTT+DAPQIT+FAL  PKYVEVKFADGSVFNLSAEFLR+YSPA D+K+R
Sbjct: 68  MLPLHRLFRTIHTTLDAPQITTFALHAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKIR 127

Query: 61  TIGGEKVISGRRYVGIMSAEPVGNYGVRILFDDLHKTGIYSWDYFYHLGSNKFTLLRNYV 120
           +IGGEKVISGRR+VGIMSAEPVGNYGVRILFDDLH+TGIYSWDYF+HLGSNKFTLLRNYV
Sbjct: 128 SIGGEKVISGRRHVGIMSAEPVGNYGVRILFDDLHRTGIYSWDYFFHLGSNKFTLLRNYV 187

Query: 121 KTLKKHGLSRDPPRRK 137
           KTLKKHGLSRDPP+RK
Sbjct: 188 KTLKKHGLSRDPPKRK 203

The following BLAST results are available for this feature:

BLAST of Lag0027524.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984013.1	1.4e-66	91.91	uncharacterized protein LOC111482460 isoform X1 [Cucurbita maxima]	[more]
XP_022935010.1	6.7e-66	91.18	uncharacterized protein LOC111442002 isoform X1 [Cucurbita moschata]	[more]
XP_022154140.1	4.4e-65	90.37	uncharacterized protein LOC111021468 isoform X1 [Momordica charantia]	[more]
KAG7017806.1	5.7e-65	91.18	hypothetical protein SDJN02_19672 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_031737737.1	2.2e-64	88.24	uncharacterized protein LOC101219823 isoform X1 [Cucumis sativus]	[more]

BLAST of Lag0027524.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038492	GBBH-like, N-terminal domain superfamily	GENE3D	3.30.2020.30		coord: 16..110 e-value: 1.0E-17 score: 66.1
IPR010376	Gamma-butyrobetaine hydroxylase-like, N-terminal	PFAM	PF06155	GBBH-like_N	coord: 29..105 e-value: 1.3E-19 score: 70.6
None	No IPR available	PANTHER	PTHR35303	OS02G0197800 PROTEIN	coord: 9..135
None	No IPR available	PANTHER	PTHR35303:SF6	BNAA06G32170D PROTEIN	coord: 9..135

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0027524	Lag0027524	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0027524.1.exon1	Lag0027524.1.exon1	exon
Lag0027524.1.exon2	Lag0027524.1.exon2	exon
Lag0027524.1.exon3	Lag0027524.1.exon3	exon
Lag0027524.1.exon4	Lag0027524.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0027524.1	cds.Lag0027524.1	CDS
cds.Lag0027524.1	cds.Lag0027524.1_2	CDS
cds.Lag0027524.1	cds.Lag0027524.1_3	CDS
cds.Lag0027524.1	cds.Lag0027524.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0027524.1	Lag0027524.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding