Lag0022478.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0022478.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr7: 30191501 .. 30191995 (+)
Sequence length	495
RNA-Seq Expression	Lag0022478.1
Synteny	Lag0022478.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCCGAAGAAGCTTCTTCAAAAATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCCTGTCATTGCAAACAAGATGTTGAGACGTACGATAGAATCTTCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGTTTGGCAAATTCATCTCCTATTCTCAACAACCAAACGAAACATCCAGTCTTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGTTGAAGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAGATCATTGCACAAGATCAGTCACAACATTCCGCTTCTATTGCTTCACTGTCCGTTCAGCAGCTCTAG

mRNA sequence

ATGACTTCCGAAGAAGCTTCTTCAAAAATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCCTGTCATTGCAAACAAGATGTTGAGACGTACGATAGAATCTTCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGTTTGGCAAATTCATCTCCTATTCTCAACAACCAAACGAAACATCCAGTCTTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGTTGAAGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAGATCATTGCACAAGATCAGTCACAACATTCCGCTTCTATTGCTTCACTGTCCGTTCAGCAGCTCTAG

Coding sequence (CDS)

ATGACTTCCGAAGAAGCTTCTTCAAAAATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCCTGTCATTGCAAACAAGATGTTGAGACGTACGATAGAATCTTCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGTTTGGCAAATTCATCTCCTATTCTCAACAACCAAACGAAACATCCAGTCTTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGTTGAAGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAGATCATTGCACAAGATCAGTCACAACATTCCGCTTCTATTGCTTCACTGTCCGTTCAGCAGCTCTAG

Protein sequence

MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVEKKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIKDKGKIIAQDQSQHSASIASLSVQQL

Homology

[Close]

BLAST of Lag0022478.1 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 78/168 (46.43%), Postives = 114/168 (67.86%), Query Frame = 0


Query: 1   MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAEN 60
           M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVEKKISMLLKMVEEKDQEIASL 120
            ++  + S S +  + +  DVMSVMM D    E  M E+E+KI++L+K+V+E+D EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL 165
           + QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]

BLAST of Lag0022478.1 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 78/168 (46.43%), Postives = 114/168 (67.86%), Query Frame = 0


Query: 1   MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAEN 60
           M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVEKKISMLLKMVEEKDQEIASL 120
            ++  + S S +  + +  DVMSVMM D    E  M E+E+KI++L+K+V+E+D EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL 165
           + QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]

BLAST of Lag0022478.1 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 78/168 (46.43%), Postives = 114/168 (67.86%), Query Frame = 0


Query: 1   MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAEN 60
           M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVEKKISMLLKMVEEKDQEIASL 120
            ++  + S S +  + +  DVMSVMM D    E  M E+E+KI++L+K+V+E+D EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL 165
           + QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]

BLAST of Lag0022478.1 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 78/168 (46.43%), Postives = 114/168 (67.86%), Query Frame = 0


Query: 1   MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAEN 60
           M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVEKKISMLLKMVEEKDQEIASL 120
            ++  + S S +  + +  DVMSVMM D    E  M E+E+KI++L+K+V+E+D EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL 165
           + QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]

BLAST of Lag0022478.1 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 78/168 (46.43%), Postives = 114/168 (67.86%), Query Frame = 0


Query: 1   MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAEN 60
           M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVEKKISMLLKMVEEKDQEIASL 120
            ++  + S S +  + +  DVMSVMM D    E  M E+E+KI++L+K+V+E+D EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 RNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL 165
           + QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

The following BLAST results are available for this feature:

BLAST of Lag0022478.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	1.3e-23	46.43	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.3e-23	46.43	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	1.3e-23	46.43	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	1.3e-23	46.43	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737053.1	1.3e-23	46.43	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of Lag0022478.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..61
None	No IPR available	COILS	Coil	Coil	coord: 96..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..146

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0022478	Lag0022478	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0022478.1.exon1	Lag0022478.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0022478.1	cds.Lag0022478.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0022478.1	Lag0022478.1-protein	polypeptide