Lag0019903.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0019903.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 46591835 .. 46592486 (-)
Sequence length390
RNA-Seq ExpressionLag0019903.1
SyntenyLag0019903.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGCGACAGCGACGGCGGCCGTCGCTCCAGTAAGTGTTGCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATTTTCTTTGGTAAGGATGATATGAAAGAATACGTGTGGGACGAAGCTTTCACTGAAGAAACAGTTCGATTCATTGAAAGAGAGTCCGCTATGAAAGCTCTGAGAAAGAGAAGCAAGAGAAGGCGGCCAGAAACGATCAGTTGCCTTGAGTTCTTGAAATTCGTGTGGTGCTTCAAATTCTAACTCTCTTCTTTTTCTCTGTTTATAGATCGATTCAAATGTCTATATCGATTCGATGATTCTCGATCTCTTTTCATTCTTCTTCTTCTTCCTTGCTCGATCGATGCCGATTCGTCGAAATTTTCCGAGCACGGAATTGTAATTAATTAGAATTGTGATCTCTGTATCCTTCAATCCAAATGGTTAAAAGGCTTCAGATCATGTAGTTGATGTCTTCTTGTTCCTTTTTGTTTCAATCTGTTGCAATAGGAATTCGAATGAAAACTCTGTTCTGAGCAATTTTCTCGGAATCCAAACAGTGTTAGGTCAACTGAACGATGACAAAATTTTGCGTGATCAATTCGAATTCCTTAAGAAATGA

mRNA sequence

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGCGACAGCGACGGCGGCCGTCGCTCCAGTAAGTGTTGCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATTTTCTTTGGTAAGGATGATATGAAAGAATACGTGTGGGACGAAGCTTTCACTGAAGAAACAGTTCGATTCATTGAAAGAGAGTCCGCTATGAAAGCTCTGAGAAAGAGAAGCAAGAGAAGGCGGCCAGAAACGATCAGTTGCCTTGAGTTCTTGAAATTCGTGTGGAATTCGAATGAAAACTCTGTTCTGAGCAATTTTCTCGGAATCCAAACAGTGTTAGGTCAACTGAACGATGACAAAATTTTGCGTGATCAATTCGAATTCCTTAAGAAATGA

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGCGACAGCGACGGCGGCCGTCGCTCCAGTAAGTGTTGCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATTTTCTTTGGTAAGGATGATATGAAAGAATACGTGTGGGACGAAGCTTTCACTGAAGAAACAGTTCGATTCATTGAAAGAGAGTCCGCTATGAAAGCTCTGAGAAAGAGAAGCAAGAGAAGGCGGCCAGAAACGATCAGTTGCCTTGAGTTCTTGAAATTCGTGTGGAATTCGAATGAAAACTCTGTTCTGAGCAATTTTCTCGGAATCCAAACAGTGTTAGGTCAACTGAACGATGACAAAATTTTGCGTGATCAATTCGAATTCCTTAAGAAATGA

Protein sequence

MARDILPFEFGGGGDSDGGRRSSKCCSRPSKYDVVGDIFFGKDDMKEYVWDEAFTEETVRFIERESAMKALRKRSKRRRPETISCLEFLKFVWNSNENSVLSNFLGIQTVLGQLNDDKILRDQFEFLKK
Homology
BLAST of Lag0019903.1 vs. NCBI nr
Match: KAG6576802.1 (hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014829.1 hypothetical protein SDJN02_22458, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 69/96 (71.88%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDSDGGRRSSKCCSRPSKYDVVGDIFFGKDDMKEYVWDEAFTEETVR 60
          MARD LP+EFG GG   GG    K CS PSKYDVVGDIFFGKDDMK YVWDE FTEETVR
Sbjct: 1  MARDTLPYEFGVGG---GG----KSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVR 60

Query: 61 FIERESAMKALRKRSKRRRPETISCLEFLKFVWNSN 97
          F+E ESA++ LRKRSKRR  ET  C EFLKF+W  N
Sbjct: 61 FLETESAVEVLRKRSKRRL-ETFKCFEFLKFLWCFN 88

BLAST of Lag0019903.1 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-21
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 0

Query: 1   MARDILPFEFGGGGDSDGGRRSSKCCSRPSKYDVVGDIFFGKDDMKEYVWDEAFTEETVR 60
           MA D  PFEF  GGD DGGRR  K CSRPSKYDVVGDIFFGKDDMKEY WD AFTE+TVR
Sbjct: 1   MAIDTTPFEF--GGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVR 60

Query: 61  FIERESAMKALR-KRSKRR---RPETISCLEFLKFVWNSNENSVLSNFLGIQT 110
           FIE       +  KRS       P   +C +F + ++ S  ++++ + L +++
Sbjct: 61  FIETVRRFSTVNVKRSSEPLSVTPAVSTCADFTQTIYFSRSHTLIRHILILES 111

BLAST of Lag0019903.1 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_009618 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 59/93 (63.44%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDSDGGRRSSKCCSRPSKYDVVGDIFFGKDDMKEYVWDEAFTEETVR 60
          MARDILPFEFGGGG  +  R               GDIFFGKDDMKEY WD  +TEETVR
Sbjct: 1  MARDILPFEFGGGGAGESERG--------------GDIFFGKDDMKEYAWDGVYTEETVR 60

Query: 61 FIERESAMKALRKRSKRRRPETISCLEFLKFVW 94
          FIE ESA KALRKRS RR+ E  +C EFLK VW
Sbjct: 61 FIETESAKKALRKRS-RRKLEPFNCFEFLKIVW 78

BLAST of Lag0019903.1 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-20
Identity = 58/113 (51.33%), Postives = 73/113 (64.60%), Query Frame = 0

Query: 1   MARDILPFEFGGGGDSDGGRRSSKCCSRPSKYDVVGDIFFGKDDMKEYVWDEAFTEETVR 60
           MA D  PFEF  GGD DGGRR  K CSRPSKYDVVGDIFFGKDDMKEY WD AFTE+TVR
Sbjct: 1   MAIDTTPFEF--GGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVR 60

Query: 61  FIERESAMKALR-KRSKRR---RPETISCLEFLKFVWNSNENSVLSNFLGIQT 110
           FIE       +  KRS       P   +  +F + ++ S  ++++ + L +++
Sbjct: 61  FIETVRRFSTVNVKRSSEPLSVTPAVSTAADFTQTIYFSRSHTLIRHILILES 111

BLAST of Lag0019903.1 vs. NCBI nr
Match: KAA0067665.1 (hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669.1 hypothetical protein E5676_scaffold577G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 56/92 (60.87%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDSDGGRRSSKCCSRPSKYDVVGDIFFGKDDMKEYVWDEAFTEETVR 60
          MARDILPFEFGGGG  +  R               GD+FFGKDDMKEY WD  +TEETVR
Sbjct: 1  MARDILPFEFGGGGGGESERG--------------GDVFFGKDDMKEYAWDGVYTEETVR 60

Query: 61 FIERESAMKALRKRSKRRRPETISCLEFLKFV 93
          FIE ESA KALRKRS RR+ E  +C EFL+ V
Sbjct: 61 FIETESAKKALRKRS-RRKLEPFNCFEFLRIV 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6576802.19.9e-2771.88hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030840.14.8e-2152.21hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN57263.13.1e-2063.44hypothetical protein Csa_009618 [Cucumis sativus][more]
KAG6600176.15.3e-2051.33hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0067665.11.3e-1860.87hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0019903Lag0019903gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0019903.1.exon2Lag0019903.1.exon2exon
Lag0019903.1.exon1Lag0019903.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0019903.1cds.Lag0019903.1_2CDS
cds.Lag0019903.1cds.Lag0019903.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0019903.1Lag0019903.1-proteinpolypeptide