Lag0017348.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017348.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr5: 2559548 .. 2561284 (+)
Sequence length	1737
RNA-Seq Expression	Lag0017348.1
Synteny	Lag0017348.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATAATCAACAAACTTTCAGAGCTCAAGCTTTCACAGAAAGAATCTAGCGGAATAAACACTTCGGAGTTGGGCTTACACGAAAATCAGGCTAAGCTCCAAAATTGTCTGGTAGGAAAGGTTGTTTCTCAACGAACTATCAACATTGACGCGTTCAGGAAAACTATGACAAAAGTATGGTATTTTTGTCGTGGGATAACCATCGATAATATTGGGGAAAATCTCTTTCTTATCAATCCACAATCCGTTCTAGGAAGGGACAGAATTGTGGAGGAGAGCCCATGGTGTTTCGACGGTAATTTGATTCTACTCAAAACCCCAACAACGTTCGATCAGCCAGAAGATATGATTTTCGATGATCCACAGTTCTGGGTTCAAATTCACCATTTACCTCTTGGATTACGAAATGGCAAAGTGGCACAAACGCTTGGGAACATAATAGGGATAGTACAAAGAGTAGATACAAATGAAGTGGATGAATGTTGGGGTCCTTTTCTCCGAGTACGGGTCAAGATGAAGATCAACGAGCCTTTATGTCGGGGGTTAACTCTAAATGACGGACCATCTGGAAAAATCTTGGCAGCGATTAAGTACGAGAGATTGCCTGATTTTTGTTATTACTGTGGAATGATCGATCACAATGATGGCTCATGCCCACTTCTAAAAACCCAGGCGAAACCAGAAAAACAATTCGGATCATGGATGCGAGCGGCTAGTCCTCCAAGAAAATACCATTCTAACGCAAGCGGCCGAGGATTTGAAGGAACCCGAGGAGGAAGAGGTCGATTTGGAAACCGACAAGGGGGAAAGCATTCGTGGCGATCTGAATCAATGGAGGAGGGGGAACACGATAACGATGAAGAACCGATTACAACTAATTCTCAACTCTCGAACGACGGCAATGGCGAACAACAGACAGGAACTGACCGCCGGACGTTTTCTGCGATCGCCTCCGACGATCCTCCACCGCAATCAAAGCTCCCAGCGGCAAAGACGGGTATTAAATGTTCGATTTCCTTAGATAACGCTAATATTATGGATCCGTTCCCTATAATTGCAGATGCCGATAATTTAGGAAAGGAGGGAGATGGGTTTAATGGCTGCAACGGCCAGAAATCCCTAAAAATCAGCAACATAACTAATGGAGAAGGGAAAGGAAACGACGCTGATGAAAGCTTAGGGCATATGGAAACTAATGGGCTTGAAAATTATGATGGGCCCATTCCTTCTGGCAAAATTATTACAACCCAAATCAACATAAAACCAAATCAAATAATGGTGTATCAGCAACCCAATACGGAAGGGGTTGAAACCAATCACAACCCACTTGAAGGTAACAATATTGTAAGCCCAGGCCTTTTCCATGAAGCAACTATGATGGAAGCAGATCATTACTATGTCAAGCCCAAATCGACGGTGCAGGTCAAAGAGAATCAGAAGAATAAACAGCCCATATCTGCAGACTCTGAAAGTGGAAAAAAGGATCGTTGGGAGCAGGGAAATATTTCTCTTGATAAGCTAAGGCTGTTAAAAGGCTGGAAGAGGATTAACAGACAGGGAGATCACACTAAGGTCGATCAATCCACAGAACTCATGCAATTTGCTTCAAGGAAGAGGGTTGCAGAAAATGATAAATTGGAAGGTAGCTCAGACAAGAAACTCAAATCACTAGTTCCACAAAAGGATGGAATTATATCGGCGGAGCCTGATCAGCAGGCCCGCCGAGAGCCATGA

mRNA sequence

ATGGATATAATCAACAAACTTTCAGAGCTCAAGCTTTCACAGAAAGAATCTAGCGGAATAAACACTTCGGAGTTGGGCTTACACGAAAATCAGGCTAAGCTCCAAAATTGTCTGGTAGGAAAGGTTGTTTCTCAACGAACTATCAACATTGACGCGTTCAGGAAAACTATGACAAAAGTATGGTATTTTTGTCGTGGGATAACCATCGATAATATTGGGGAAAATCTCTTTCTTATCAATCCACAATCCGTTCTAGGAAGGGACAGAATTGTGGAGGAGAGCCCATGGTGTTTCGACGGTAATTTGATTCTACTCAAAACCCCAACAACGTTCGATCAGCCAGAAGATATGATTTTCGATGATCCACAGTTCTGGGTTCAAATTCACCATTTACCTCTTGGATTACGAAATGGCAAAGTGGCACAAACGCTTGGGAACATAATAGGGATAGTACAAAGAGTAGATACAAATGAAGTGGATGAATGTTGGGGTCCTTTTCTCCGAGTACGGGTCAAGATGAAGATCAACGAGCCTTTATGTCGGGGGTTAACTCTAAATGACGGACCATCTGGAAAAATCTTGGCAGCGATTAAGTACGAGAGATTGCCTGATTTTTGTTATTACTGTGGAATGATCGATCACAATGATGGCTCATGCCCACTTCTAAAAACCCAGGCGAAACCAGAAAAACAATTCGGATCATGGATGCGAGCGGCTAGTCCTCCAAGAAAATACCATTCTAACGCAAGCGGCCGAGGATTTGAAGGAACCCGAGGAGGAAGAGGTCGATTTGGAAACCGACAAGGGGGAAAGCATTCGTGGCGATCTGAATCAATGGAGGAGGGGGAACACGATAACGATGAAGAACCGATTACAACTAATTCTCAACTCTCGAACGACGGCAATGGCGAACAACAGACAGGAACTGACCGCCGGACGTTTTCTGCGATCGCCTCCGACGATCCTCCACCGCAATCAAAGCTCCCAGCGGCAAAGACGGGTATTAAATGTTCGATTTCCTTAGATAACGCTAATATTATGGATCCGTTCCCTATAATTGCAGATGCCGATAATTTAGGAAAGGAGGGAGATGGGTTTAATGGCTGCAACGGCCAGAAATCCCTAAAAATCAGCAACATAACTAATGGAGAAGGGAAAGGAAACGACGCTGATGAAAGCTTAGGGCATATGGAAACTAATGGGCTTGAAAATTATGATGGGCCCATTCCTTCTGGCAAAATTATTACAACCCAAATCAACATAAAACCAAATCAAATAATGGTGTATCAGCAACCCAATACGGAAGGGGTTGAAACCAATCACAACCCACTTGAAGGTAACAATATTGTAAGCCCAGGCCTTTTCCATGAAGCAACTATGATGGAAGCAGATCATTACTATGTCAAGCCCAAATCGACGGTGCAGGTCAAAGAGAATCAGAAGAATAAACAGCCCATATCTGCAGACTCTGAAAGTGGAAAAAAGGATCGTTGGGAGCAGGGAAATATTTCTCTTGATAAGCTAAGGCTGTTAAAAGGCTGGAAGAGGATTAACAGACAGGGAGATCACACTAAGGTCGATCAATCCACAGAACTCATGCAATTTGCTTCAAGGAAGAGGGTTGCAGAAAATGATAAATTGGAAGGTAGCTCAGACAAGAAACTCAAATCACTAGTTCCACAAAAGGATGGAATTATATCGGCGGAGCCTGATCAGCAGGCCCGCCGAGAGCCATGA

Coding sequence (CDS)

ATGGATATAATCAACAAACTTTCAGAGCTCAAGCTTTCACAGAAAGAATCTAGCGGAATAAACACTTCGGAGTTGGGCTTACACGAAAATCAGGCTAAGCTCCAAAATTGTCTGGTAGGAAAGGTTGTTTCTCAACGAACTATCAACATTGACGCGTTCAGGAAAACTATGACAAAAGTATGGTATTTTTGTCGTGGGATAACCATCGATAATATTGGGGAAAATCTCTTTCTTATCAATCCACAATCCGTTCTAGGAAGGGACAGAATTGTGGAGGAGAGCCCATGGTGTTTCGACGGTAATTTGATTCTACTCAAAACCCCAACAACGTTCGATCAGCCAGAAGATATGATTTTCGATGATCCACAGTTCTGGGTTCAAATTCACCATTTACCTCTTGGATTACGAAATGGCAAAGTGGCACAAACGCTTGGGAACATAATAGGGATAGTACAAAGAGTAGATACAAATGAAGTGGATGAATGTTGGGGTCCTTTTCTCCGAGTACGGGTCAAGATGAAGATCAACGAGCCTTTATGTCGGGGGTTAACTCTAAATGACGGACCATCTGGAAAAATCTTGGCAGCGATTAAGTACGAGAGATTGCCTGATTTTTGTTATTACTGTGGAATGATCGATCACAATGATGGCTCATGCCCACTTCTAAAAACCCAGGCGAAACCAGAAAAACAATTCGGATCATGGATGCGAGCGGCTAGTCCTCCAAGAAAATACCATTCTAACGCAAGCGGCCGAGGATTTGAAGGAACCCGAGGAGGAAGAGGTCGATTTGGAAACCGACAAGGGGGAAAGCATTCGTGGCGATCTGAATCAATGGAGGAGGGGGAACACGATAACGATGAAGAACCGATTACAACTAATTCTCAACTCTCGAACGACGGCAATGGCGAACAACAGACAGGAACTGACCGCCGGACGTTTTCTGCGATCGCCTCCGACGATCCTCCACCGCAATCAAAGCTCCCAGCGGCAAAGACGGGTATTAAATGTTCGATTTCCTTAGATAACGCTAATATTATGGATCCGTTCCCTATAATTGCAGATGCCGATAATTTAGGAAAGGAGGGAGATGGGTTTAATGGCTGCAACGGCCAGAAATCCCTAAAAATCAGCAACATAACTAATGGAGAAGGGAAAGGAAACGACGCTGATGAAAGCTTAGGGCATATGGAAACTAATGGGCTTGAAAATTATGATGGGCCCATTCCTTCTGGCAAAATTATTACAACCCAAATCAACATAAAACCAAATCAAATAATGGTGTATCAGCAACCCAATACGGAAGGGGTTGAAACCAATCACAACCCACTTGAAGGTAACAATATTGTAAGCCCAGGCCTTTTCCATGAAGCAACTATGATGGAAGCAGATCATTACTATGTCAAGCCCAAATCGACGGTGCAGGTCAAAGAGAATCAGAAGAATAAACAGCCCATATCTGCAGACTCTGAAAGTGGAAAAAAGGATCGTTGGGAGCAGGGAAATATTTCTCTTGATAAGCTAAGGCTGTTAAAAGGCTGGAAGAGGATTAACAGACAGGGAGATCACACTAAGGTCGATCAATCCACAGAACTCATGCAATTTGCTTCAAGGAAGAGGGTTGCAGAAAATGATAAATTGGAAGGTAGCTCAGACAAGAAACTCAAATCACTAGTTCCACAAAAGGATGGAATTATATCGGCGGAGCCTGATCAGCAGGCCCGCCGAGAGCCATGA

Protein sequence

MDIINKLSELKLSQKESSGINTSELGLHENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDNIGENLFLINPQSVLGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHLPLGLRNGKVAQTLGNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSGKILAAIKYERLPDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAASPPRKYHSNASGRGFEGTRGGRGRFGNRQGGKHSWRSESMEEGEHDNDEEPITTNSQLSNDGNGEQQTGTDRRTFSAIASDDPPPQSKLPAAKTGIKCSISLDNANIMDPFPIIADADNLGKEGDGFNGCNGQKSLKISNITNGEGKGNDADESLGHMETNGLENYDGPIPSGKIITTQINIKPNQIMVYQQPNTEGVETNHNPLEGNNIVSPGLFHEATMMEADHYYVKPKSTVQVKENQKNKQPISADSESGKKDRWEQGNISLDKLRLLKGWKRINRQGDHTKVDQSTELMQFASRKRVAENDKLEGSSDKKLKSLVPQKDGIISAEPDQQARREP

Homology

[Close]

BLAST of Lag0017348.1 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 191.0 bits (484), Expect = 2.8e-44
Identity = 91/254 (35.83%), Postives = 142/254 (55.91%), Query Frame = 0


Query: 12  LSQKESSGINTSELGLHENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDN 71
           L+++E+  +      + E  A+  NCL+GK++S+R +N++  R  M  VW    G+ +  
Sbjct: 14  LTEEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMHMVWKLAGGLQVRE 73

Query: 72  IGENLFLINPQSVLGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHL 131
           IGENLF+   +S L ++R+ +++PW F+  L++LK+   +D  ED+  D   FW Q H L
Sbjct: 74  IGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIKLDGCSFWKQAHDL 133

Query: 132 PLGLRNGKVAQTLGNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSG 191
           PLG  N  + + +G   G V+ +DT      WG FLR R ++ + +PL RG+ L     G
Sbjct: 134 PLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKPLRRGMILTAPNGG 193

Query: 192 KILAAIKYERLPDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAASPPRKYHS 251
           KIL + +YE+LPDFCY CG + H +  C     + + + K  K++G W+R A  PR    
Sbjct: 194 KILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEYGPWLR-AEVPRSKSV 253

Query: 252 NASGRGFEGTRGGR 262
              G G   TR GR
Sbjct: 254 KFDGPGISETRTGR 266

[Close]

BLAST of Lag0017348.1 vs. NCBI nr
Match: OMP03234.1 (hypothetical protein COLO4_10561 [Corchorus olitorius])

HSP 1 Score: 182.6 bits (462), Expect = 9.9e-42
Identity = 86/254 (33.86%), Postives = 143/254 (56.30%), Query Frame = 0


Query: 12  LSQKESSGINTSELGLHENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDN 71
           L+++E+  +  +   + E+ A+ + CL+GK++S+R +NID  R  +  VW    G+ +  
Sbjct: 14  LTKEETMEMAVNHTMVAESLAEGKLCLIGKLLSRRAVNIDVMRNVLHMVWKLSGGLQVRE 73

Query: 72  IGENLFLINPQSVLGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHL 131
           IGE L++   +S + ++R+ ++ PW F+  L++LK    F   E++  +   FW+Q+H L
Sbjct: 74  IGEKLYIFQFESEVEKERVYQQGPWNFNKALLVLKNYDAFISVEEIKLEWCAFWIQVHDL 133

Query: 132 PLGLRNGKVAQTLGNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSG 191
           PLG     V + +G+  G V  +DT      WG FLR+R  + +N+PL RG+ L     G
Sbjct: 134 PLGFMTESVGKAIGDSFGEVIEIDTCGDKVAWGKFLRIRACLNVNKPLRRGMILTAPNGG 193

Query: 192 KILAAIKYERLPDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAASPPRKYHS 251
           KIL + +YE+LPDFCY CG ++H +  C     + +   K +K++G W+R A  PR    
Sbjct: 194 KILVSFRYEKLPDFCYVCGCLNHTENECEKAVIMRRDSGKVKKEYGPWLR-AEVPRSNTL 253

Query: 252 NASGRGFEGTRGGR 262
              G G   TR G+
Sbjct: 254 KFDGPGISETRTGK 266

[Close]

BLAST of Lag0017348.1 vs. NCBI nr
Match: TXG60826.1 (hypothetical protein EZV62_012189 [Acer yangbiense])

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-38
Identity = 87/238 (36.55%), Postives = 139/238 (58.40%), Query Frame = 0


Query: 33  KLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDNIGENLFLINPQSVLGRDRIVE 92
           KL+ C+VGKV S + IN +AFR  M K+W   +G+ I+ + +N+FL   ++   R R + 
Sbjct: 36  KLELCVVGKVFSHKHINREAFRTVMPKIWR-TQGLEIEVVRDNIFLFYFRNQKDRTRTLA 95

Query: 93  ESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHLPLGLRNGKVAQTLGNIIGIVQ 152
             PWCFD  L+ L+        + + F    FWVQIH+ PL     ++   LG IIG ++
Sbjct: 96  GGPWCFDNCLLALEKVNGVGDIDQVGFHRADFWVQIHNAPLLCMTKEMGMFLGQIIGELK 155

Query: 153 RVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLN-DGPSGKILAAIKYERLPDFCYYCGM 212
            +D     EC+G +LRVRV + +N+PL R L ++  G   + L  ++Y++LP++C++CG 
Sbjct: 156 DIDVGSTGECFGKYLRVRVAIDLNQPLKRFLRMDLTGDGKESLLLLRYKKLPEYCFHCGR 215

Query: 213 IDHNDGSCPLLK-TQAKP---EKQFGSWMRAASPPRKYHSNASGRGFEGTRGGRGRFG 266
           + H+   C L K   A+P   + +FG+W+R  +PPR  H ++SGR F G+ G   + G
Sbjct: 216 LGHSFSDCGLRKENHARPMDVDFEFGAWLRVLNPPRS-HKSSSGRRFRGSEGSSSQSG 271

[Close]

BLAST of Lag0017348.1 vs. NCBI nr
Match: XP_042980067.1 (uncharacterized protein LOC122310252 [Carya illinoinensis])

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-38
Identity = 83/238 (34.87%), Postives = 131/238 (55.04%), Query Frame = 0


Query: 8   SELKLSQKESSGINTSELGLHENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGI 67
           S LKL++ E   +   E     ++ +   CL+  +++ RT N +AF+ TM KVW     I
Sbjct: 10  SSLKLTEAEQQELFLPEEEALSSKLRGHLCLLASILNDRTANREAFKSTMAKVWNTFGWI 69

Query: 68  TIDNIGENLFLINPQSVLGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQ 127
           T    G N FL+  Q +  + +++   PW FD +LI LK   +   P ++ F    FWVQ
Sbjct: 70  TFKEFGPNKFLLEFQLLSDKQKVLHGRPWSFDRHLICLKDFESDLSPNEVQFITEPFWVQ 129

Query: 128 IHHLPLGLRNGKVAQTLGNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLND 187
            H+LP    N ++ + +G  IG V  V+ +E    WG +LR++V + + +PL RG  +N 
Sbjct: 130 AHNLPFAGMNRQLGEKIGEAIGKVHTVEVDEQGHSWGSYLRLKVDVDVTKPLVRGRMVNS 189

Query: 188 GPSGKILAAIKYERLPDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAAS--PPR 244
           G   ++ +  KYERLP+FC+ CG+  H +G CP      +P+ Q+G WMRA +  PP+
Sbjct: 190 G-GKQLWSHFKYERLPNFCFKCGLFKHANGKCPNFGLNNQPQDQYGQWMRAPNSFPPQ 246

[Close]

BLAST of Lag0017348.1 vs. NCBI nr
Match: TXG60685.1 (hypothetical protein EZV62_015258 [Acer yangbiense])

HSP 1 Score: 170.6 bits (431), Expect = 3.9e-38
Identity = 88/226 (38.94%), Postives = 132/226 (58.41%), Query Frame = 0


Query: 29  ENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDNIGENLFLINPQSVLGRD 88
           E    + +CLVGKV++ + +N +AF+K + ++W     + I+ +G+N F+    S+  R 
Sbjct: 32  EGLKDVDHCLVGKVLAGKRVNREAFKKVIEQLWSPIGSVEIEAVGDNTFMFFFPSLEVRS 91

Query: 89  RIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHLPLGLRNGKVAQTLGNII 148
            I    PW FD NLI+L+ PT       + F   +FWVQIH+LPL   N ++A+ L   I
Sbjct: 92  LIWSRGPWHFDRNLIVLEKPTGTGDISKLSFHMVEFWVQIHNLPLMCMNRRMARYLAEQI 151

Query: 149 GIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSGKILAAI-KYERLPDFCY 208
           G V  + T+   ECWG F+RV+V++ I++PL R L LN   SG++  AI  YERLP+FCY
Sbjct: 152 GTVVELPTDS-RECWGRFIRVKVRIDISKPLLRCLRLNLDDSGEVTTAILLYERLPEFCY 211

Query: 209 YCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAASPPRKYHSNA 250
            CG+I H    CP     L+       ++GSW+RAAS  +  + N+
Sbjct: 212 ACGIIGHGLRDCPDDDARLEALEGVSTKYGSWLRAASVEQSKNRNS 256

[Close]

BLAST of Lag0017348.1 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-44
Identity = 91/254 (35.83%), Postives = 142/254 (55.91%), Query Frame = 0


Query: 12  LSQKESSGINTSELGLHENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDN 71
           L+++E+  +      + E  A+  NCL+GK++S+R +N++  R  M  VW    G+ +  
Sbjct: 14  LTEEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMHMVWKLAGGLQVRE 73

Query: 72  IGENLFLINPQSVLGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHL 131
           IGENLF+   +S L ++R+ +++PW F+  L++LK+   +D  ED+  D   FW Q H L
Sbjct: 74  IGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIKLDGCSFWKQAHDL 133

Query: 132 PLGLRNGKVAQTLGNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSG 191
           PLG  N  + + +G   G V+ +DT      WG FLR R ++ + +PL RG+ L     G
Sbjct: 134 PLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKPLRRGMILTAPNGG 193

Query: 192 KILAAIKYERLPDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAASPPRKYHS 251
           KIL + +YE+LPDFCY CG + H +  C     + + + K  K++G W+R A  PR    
Sbjct: 194 KILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEYGPWLR-AEVPRSKSV 253

Query: 252 NASGRGFEGTRGGR 262
              G G   TR GR
Sbjct: 254 KFDGPGISETRTGR 266

[Close]

BLAST of Lag0017348.1 vs. ExPASy TrEMBL
Match: A0A1R3K847 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10561 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.8e-42
Identity = 86/254 (33.86%), Postives = 143/254 (56.30%), Query Frame = 0


Query: 12  LSQKESSGINTSELGLHENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDN 71
           L+++E+  +  +   + E+ A+ + CL+GK++S+R +NID  R  +  VW    G+ +  
Sbjct: 14  LTKEETMEMAVNHTMVAESLAEGKLCLIGKLLSRRAVNIDVMRNVLHMVWKLSGGLQVRE 73

Query: 72  IGENLFLINPQSVLGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHL 131
           IGE L++   +S + ++R+ ++ PW F+  L++LK    F   E++  +   FW+Q+H L
Sbjct: 74  IGEKLYIFQFESEVEKERVYQQGPWNFNKALLVLKNYDAFISVEEIKLEWCAFWIQVHDL 133

Query: 132 PLGLRNGKVAQTLGNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSG 191
           PLG     V + +G+  G V  +DT      WG FLR+R  + +N+PL RG+ L     G
Sbjct: 134 PLGFMTESVGKAIGDSFGEVIEIDTCGDKVAWGKFLRIRACLNVNKPLRRGMILTAPNGG 193

Query: 192 KILAAIKYERLPDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAASPPRKYHS 251
           KIL + +YE+LPDFCY CG ++H +  C     + +   K +K++G W+R A  PR    
Sbjct: 194 KILVSFRYEKLPDFCYVCGCLNHTENECEKAVIMRRDSGKVKKEYGPWLR-AEVPRSNTL 253

Query: 252 NASGRGFEGTRGGR 262
              G G   TR G+
Sbjct: 254 KFDGPGISETRTGK 266

[Close]

BLAST of Lag0017348.1 vs. ExPASy TrEMBL
Match: A0A2N9F689 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10176 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.6e-40
Identity = 86/246 (34.96%), Postives = 135/246 (54.88%), Query Frame = 0


Query: 1   MDIINKLSELKLSQKESSGINTSELGLHENQAKLQNCLVGKVVSQRTINIDAFRKTMTKV 60
           +D+I  L +L L++ E+  I   E     +Q K + CL+ K+++QR  N    + TMT +
Sbjct: 5   LDVI--LKKLSLTESENEDIKIQEESFKNSQGKTKFCLLAKLLTQRPFNKGTLKSTMTNL 64

Query: 61  W--YFCRGITIDNIGENLFLINPQSVLGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMI 120
           W     RG+   +IG+NLFL        ++ ++  SPWCFD  L++LK      Q  ++ 
Sbjct: 65  WKPMTTRGVKARDIGDNLFLFEFHDQYDKETVLIASPWCFDRQLLVLKDFNGDSQLANIS 124

Query: 121 FDDPQFWVQIHHLPLGLRNGKVAQTLGNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEP 180
            D+  FWVQI+ LP+     +V + +G  +G V+ V+       WG FLRVRV++ + +P
Sbjct: 125 LDEALFWVQIYDLPIMAMTREVGKAIGETMGTVEEVEAEADGTAWGRFLRVRVRLDVRKP 184

Query: 181 LCRGLTLNDGPSGKILAAIKYERLPDFCYYCGMIDHNDGSCPL-LKTQAK-----PEKQF 239
           L R   +  G    IL   +YERLP+FC+YCG +DH +  C + L+ + K      E Q+
Sbjct: 185 LTRVKRVKLGSDPSILVYFRYERLPNFCFYCGKLDHGERECKMRLRNKGKMAAESSENQY 244

[Close]

BLAST of Lag0017348.1 vs. ExPASy TrEMBL
Match: A0A5C7HWW6 (Glucan endo-1,3-beta-D-glucosidase OS=Acer yangbiense OX=1000413 GN=EZV62_012189 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.9e-39
Identity = 87/238 (36.55%), Postives = 139/238 (58.40%), Query Frame = 0


Query: 33  KLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDNIGENLFLINPQSVLGRDRIVE 92
           KL+ C+VGKV S + IN +AFR  M K+W   +G+ I+ + +N+FL   ++   R R + 
Sbjct: 36  KLELCVVGKVFSHKHINREAFRTVMPKIWR-TQGLEIEVVRDNIFLFYFRNQKDRTRTLA 95

Query: 93  ESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHLPLGLRNGKVAQTLGNIIGIVQ 152
             PWCFD  L+ L+        + + F    FWVQIH+ PL     ++   LG IIG ++
Sbjct: 96  GGPWCFDNCLLALEKVNGVGDIDQVGFHRADFWVQIHNAPLLCMTKEMGMFLGQIIGELK 155

Query: 153 RVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLN-DGPSGKILAAIKYERLPDFCYYCGM 212
            +D     EC+G +LRVRV + +N+PL R L ++  G   + L  ++Y++LP++C++CG 
Sbjct: 156 DIDVGSTGECFGKYLRVRVAIDLNQPLKRFLRMDLTGDGKESLLLLRYKKLPEYCFHCGR 215

Query: 213 IDHNDGSCPLLK-TQAKP---EKQFGSWMRAASPPRKYHSNASGRGFEGTRGGRGRFG 266
           + H+   C L K   A+P   + +FG+W+R  +PPR  H ++SGR F G+ G   + G
Sbjct: 216 LGHSFSDCGLRKENHARPMDVDFEFGAWLRVLNPPRS-HKSSSGRRFRGSEGSSSQSG 271

[Close]

BLAST of Lag0017348.1 vs. ExPASy TrEMBL
Match: A0A5C7HUW5 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015258 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-38
Identity = 88/226 (38.94%), Postives = 132/226 (58.41%), Query Frame = 0


Query: 29  ENQAKLQNCLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDNIGENLFLINPQSVLGRD 88
           E    + +CLVGKV++ + +N +AF+K + ++W     + I+ +G+N F+    S+  R 
Sbjct: 32  EGLKDVDHCLVGKVLAGKRVNREAFKKVIEQLWSPIGSVEIEAVGDNTFMFFFPSLEVRS 91

Query: 89  RIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHLPLGLRNGKVAQTLGNII 148
            I    PW FD NLI+L+ PT       + F   +FWVQIH+LPL   N ++A+ L   I
Sbjct: 92  LIWSRGPWHFDRNLIVLEKPTGTGDISKLSFHMVEFWVQIHNLPLMCMNRRMARYLAEQI 151

Query: 149 GIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSGKILAAI-KYERLPDFCY 208
           G V  + T+   ECWG F+RV+V++ I++PL R L LN   SG++  AI  YERLP+FCY
Sbjct: 152 GTVVELPTDS-RECWGRFIRVKVRIDISKPLLRCLRLNLDDSGEVTTAILLYERLPEFCY 211

Query: 209 YCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAASPPRKYHSNA 250
            CG+I H    CP     L+       ++GSW+RAAS  +  + N+
Sbjct: 212 ACGIIGHGLRDCPDDDARLEALEGVSTKYGSWLRAASVEQSKNRNS 256

[Close]

BLAST of Lag0017348.1 vs. TAIR 10
Match: AT3G31430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits to 291 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 7.1e-14
Identity = 61/223 (27.35%), Postives = 93/223 (41.70%), Query Frame = 0


Query: 30  NQAKLQN--CLVGKVVSQRTINIDAFRKTMTKVWYFCRGITIDNIGENL---FLINPQSV 89
           N A  +N   L G+ V  R  N+ +   +M ++W    G+    I E     F+   +  
Sbjct: 124 NHAVAENRFILFGRPVMPRRQNLRSIVASMPRIW-GQSGLVHGRIMEGRQFHFIFTLEES 183

Query: 90  LGRDRIVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHLPLGLRNGKVAQTL 149
           L  + ++   PW F+  +ILL+      +P+  +F    FWVQI  +P    N  V + +
Sbjct: 184 L--ETVLRRGPWAFNDWMILLQR----WEPQIPLFPFIPFWVQIRGIPFQFLNRGVVEHI 243

Query: 150 GNIIGIVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSGKILAAIKYERLPD 209
           G  +G V   D N        F RV +   I  PL              L   +YERL  
Sbjct: 244 GRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLRG 303

Query: 210 FCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAASPPRKYHS 248
           FC  CGM+ H+ G+C +   Q   E+Q          P+ YH+
Sbjct: 304 FCEVCGMLTHDFGACLI---QNGGEEQADDDDDDEEHPQTYHN 336

[Close]

BLAST of Lag0017348.1 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 49.7 bits (117), Expect = 9.3e-06
Identity = 28/131 (21.37%), Postives = 51/131 (38.93%), Query Frame = 0


Query: 90  IVEESPWCFDGNLILLKTPTTFDQPEDMIFDDPQFWVQIHHLPLGLRNGKVAQTLGNIIG 149
           I+   PW F+  + +++  T      D  F    FW+QI  +PL     ++  ++G  +G
Sbjct: 75  ILRRGPWSFNDWMCVIQRWTKLH--SDAEFKRIPFWIQIRGIPLRFLTARIITSIGERMG 134

Query: 150 IVQRVDTNEVDECWGPFLRVRVKMKINEPLCRGLTLNDGPSGKILAAIKYERLPDFCYYC 209
           +               FL   +   ++                 +   +YE+L +FC  C
Sbjct: 135 L---------------FLETNLGRDVS-----------------VLKFQYEKLKNFCTTC 171

Query: 210 GMIDHNDGSCP 221
           GM+ H+   CP
Sbjct: 195 GMLSHDASECP 171

The following BLAST results are available for this feature:

BLAST of Lag0017348.1 vs. NCBI nr


Match Name	E-value	Identity	Description
OMO61345.1	2.8e-44	35.83	reverse transcriptase [Corchorus capsularis]	[more]
OMP03234.1	9.9e-42	33.86	hypothetical protein COLO4_10561 [Corchorus olitorius]	[more]
TXG60826.1	1.0e-38	36.55	hypothetical protein EZV62_012189 [Acer yangbiense]	[more]
XP_042980067.1	1.0e-38	34.87	uncharacterized protein LOC122310252 [Carya illinoinensis]	[more]
TXG60685.1	3.9e-38	38.94	hypothetical protein EZV62_015258 [Acer yangbiense]	[more]

BLAST of Lag0017348.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017348.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3GTB5	1.3e-44	35.83	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV...	[more]
A0A1R3K847	4.8e-42	33.86	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10561 PE=4 SV=1	[more]
A0A2N9F689	7.6e-40	34.96	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10176 PE=4 SV=1	[more]
A0A5C7HWW6	4.9e-39	36.55	Glucan endo-1,3-beta-D-glucosidase OS=Acer yangbiense OX=1000413 GN=EZV62_012189...	[more]
A0A5C7HUW5	1.9e-38	38.94	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01525...	[more]

BLAST of Lag0017348.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G31430.1	7.1e-14	27.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G42140.1	9.3e-06	21.37	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 29..171 e-value: 2.4E-23 score: 82.2
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 196..220 e-value: 2.8E-8 score: 33.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 473..487
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 541..578
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 473..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 541..559
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 9..230
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 9..230

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0017348	Lag0017348	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0017348.1.exon1	Lag0017348.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0017348.1	cds.Lag0017348.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0017348.1	Lag0017348.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016787	hydrolase activity