Lag0012348.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012348.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	late embryogenesis abundant protein EMB564-like
Location	chr1: 40232524 .. 40233587 (+)
Sequence length	282
RNA-Seq Expression	Lag0012348.1
Synteny	Lag0012348.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAGAACAGGAAAGGAGCGAACTGGACGCCGGGGCCCGACAGGGAGAGACCGTCGTCCCTGGCGGAACCAGGGGAAGATCCCTCGAAGCTCAAGAGCATCTCGCCCAAGGTACGTACCACATCTCCACTTTTTCATTTGAACGAGTTATTTATTTATTAATTTATTTTAATTTTCAAATCTATTGTCAAAATGCATGTTTTTAAAAAGTTTCACTTCTTACTCTCCAATCTTTAAAATTGATTTAAATGCGCTTAATAACTATTTGATTTTTAAAAAAAAAAACTTCATGTTTTCGGAAACCAAACCAAATTTCTTGTTTTTTGAATTTGGTTCAAATGTGCCCTCTACACAGATGAAAATCATGCTAGAAAAAGCACCTTATAACCGTGCCTAAACAATTTTATACTAAAAAAATATTAGATAACATGTTTTTGAGAAAAACCAAATGGGTCAGTGGAGTGTCTCCTTCATGATGGGATCATATTCATTTGGGTTTCATAGTCTCAAAATCAATTCCCAATGGGTGGAATAACTCATTTACAGGACGAATAGTGAGATTTTCACTTACACTTATCTTAGAAGTATCTAAACACCAAGAGGTAGAAATTTTTAGAACCCTTTTTCTCCTATTTGTCAAATTTCTACCATTTTTCTCTTGTCGAGATTTTGCAGTTTTTAAAACTTTTTTTTTTTTCTCATTTGTCAATGTTCTACCTTTTTCTCTCAGTTAAACCAACAGCTTCTATGTCTTAATCACTTCCCAAGTTTTGGAGTGATATTTAATTCTAATGGTTAAAATCACTTGTTTAAATGACCAAAATCTTTCCTTTGTGTTTCATTTCACCTTTTAAGTTCTTGGTATAATTGGTATCACCCTTTCCTTGATGAAGGGCGGAGCCGTGGAGGGCAGACGAGGAAGGAGCAGCTAGGGCAGGAAGGGTATCAAGAAATGGGGCGGAAGGGAGGGCTGAGCACAATGGACAAGTCCGGAGGAGAAAGGGCGGCCGACGAAGGAATCGATATCGACGAGTCCAAGTTCACCACCAAGAATCGTTGA

mRNA sequence

ATGGCAACAGAACAGGAAAGGAGCGAACTGGACGCCGGGGCCCGACAGGGAGAGACCGTCGTCCCTGGCGGAACCAGGGGAAGATCCCTCGAAGCTCAAGAGCATCTCGCCCAAGGGCGGAGCCGTGGAGGGCAGACGAGGAAGGAGCAGCTAGGGCAGGAAGGGTATCAAGAAATGGGGCGGAAGGGAGGGCTGAGCACAATGGACAAGTCCGGAGGAGAAAGGGCGGCCGACGAAGGAATCGATATCGACGAGTCCAAGTTCACCACCAAGAATCGTTGA

Coding sequence (CDS)

ATGGCAACAGAACAGGAAAGGAGCGAACTGGACGCCGGGGCCCGACAGGGAGAGACCGTCGTCCCTGGCGGAACCAGGGGAAGATCCCTCGAAGCTCAAGAGCATCTCGCCCAAGGGCGGAGCCGTGGAGGGCAGACGAGGAAGGAGCAGCTAGGGCAGGAAGGGTATCAAGAAATGGGGCGGAAGGGAGGGCTGAGCACAATGGACAAGTCCGGAGGAGAAAGGGCGGCCGACGAAGGAATCGATATCGACGAGTCCAAGTTCACCACCAAGAATCGTTGA

Protein sequence

MATEQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMGRKGGLSTMDKSGGERAADEGIDIDESKFTTKNR

Homology

[Close]

BLAST of Lag0012348.1 vs. NCBI nr
Match: XP_031492949.1 (em protein H5 [Nymphaea colorata] >KAF3779899.1 Em protein H5 [Nymphaea thermarum])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MATEQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMG 60
          MA++QERSELD  AR+GETVVPGGT G+SLEAQEHLA+GRSRGGQTRKEQLG EGYQEMG
Sbjct: 1  MASQQERSELDERARRGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGTEGYQEMG 60

Query: 61 RKGGLSTMDKSGGERAADEGIDIDESKFTTKN 93
          RKGGLSTMD+SGGERAA EGIDIDESK+TTK+
Sbjct: 61 RKGGLSTMDESGGERAAREGIDIDESKYTTKS 92

[Close]

BLAST of Lag0012348.1 vs. NCBI nr
Match: KAA8517766.1 (hypothetical protein F0562_015229 [Nyssa sinensis])

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-32
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MATEQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMG 60
          MA+EQER+ELDA ARQGETVVPGGT GRSLEAQEHLA+GRSRGGQTRKEQ+G EGYQEMG
Sbjct: 1  MASEQERAELDAKARQGETVVPGGTGGRSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMG 60

Query: 61 RKGGLSTMDKSGGERAADEGIDIDESKFTTKN 93
          RKGGLSTMDKSGG RAA+EGI+IDE+KF T +
Sbjct: 61 RKGGLSTMDKSGGVRAAEEGIEIDEAKFKTSS 92

[Close]

BLAST of Lag0012348.1 vs. NCBI nr
Match: XP_010264594.1 (PREDICTED: late embryogenesis abundant protein EMB564-like [Nelumbo nucifera] >DAD28053.1 TPA_asm: hypothetical protein HUJ06_029521 [Nelumbo nucifera])

HSP 1 Score: 147.5 bits (371), Expect = 5.7e-32
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATEQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMG 60
          MA+ Q+R+ELDA ARQGETVVPGGT G+SLEAQEHLA GRSRGGQTRK+QLG EGYQEMG
Sbjct: 1  MASGQDRAELDAKARQGETVVPGGTGGKSLEAQEHLADGRSRGGQTRKQQLGTEGYQEMG 60

Query: 61 RKGGLSTMDKSGGERAADEGIDIDESKFTTKNR 94
          RKGGLSTMD+SGGERAA+EGIDIDESKF TKNR
Sbjct: 61 RKGGLSTMDQSGGERAAEEGIDIDESKF-TKNR 92

[Close]

BLAST of Lag0012348.1 vs. NCBI nr
Match: XP_008464209.1 (PREDICTED: protein EMB-1-like [Cucumis melo] >KAA0037756.1 protein EMB-1-like [Cucumis melo var. makuwa] >TYK29242.1 protein EMB-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MATEQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMG 60
          M++EQER ELDA ARQGETVVPGGT G+SLEAQEHLA+GRSRGGQTRKEQLG EGYQEMG
Sbjct: 1  MSSEQERGELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60

Query: 61 RKGGLSTMDKSGGERAADEGIDIDESKFTTKNR 94
          RKGGLS    SGGERAA+EG++IDESKFTTK +
Sbjct: 61 RKGGLSNTGMSGGERAAEEGVEIDESKFTTKQK 93

[Close]

BLAST of Lag0012348.1 vs. NCBI nr
Match: XP_038684374.1 (protein EMB-1-like isoform X2 [Tripterygium wilfordii])

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-31
Identity = 74/92 (80.43%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MATEQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMG 60
          MA+EQ++ ELDA ARQGETV+PGGT G+SLEAQEHLA+GRSRGGQTRKEQ+G EGYQEMG
Sbjct: 1  MASEQKKEELDARARQGETVIPGGTGGKSLEAQEHLAEGRSRGGQTRKEQIGHEGYQEMG 60

Query: 61 RKGGLSTMDKSGGERAADEGIDIDESKFTTKN 93
          RKGGLST DKSGGERAA+EGI+IDESK+ T++
Sbjct: 61 RKGGLSTTDKSGGERAAEEGIEIDESKYKTRS 92

[Close]

BLAST of Lag0012348.1 vs. ExPASy Swiss-Prot
Match: P42755 (Em protein H5 OS=Triticum aestivum OX=4565 GN=EMH5 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-32
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 4  EQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMGRKG 63
          +QERSELD  AR+GETVVPGGT G+SLEAQEHLA GRSRGG+TRKEQLG+EGY+EMGRKG
Sbjct: 5  QQERSELDRMAREGETVVPGGTGGKSLEAQEHLADGRSRGGETRKEQLGEEGYREMGRKG 64

Query: 64 GLSTMDKSGGERAADEGIDIDESKFTTKN 93
          GLSTM++SGGERAA EGI+IDESKF TK+
Sbjct: 65 GLSTMEESGGERAAREGIEIDESKFKTKS 93

[Close]

BLAST of Lag0012348.1 vs. ExPASy Swiss-Prot
Match: P17639 (Protein EMB-1 OS=Daucus carota OX=4039 GN=EMB-1 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-32
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MATEQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMG 60
          MA++QE+ ELDA ARQGETVVPGGT G+SLEAQ+HLA+GRS+GGQTRKEQLG EGY EMG
Sbjct: 1  MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGGEGYHEMG 60

Query: 61 RKGGLSTMDKSGGERAADEGIDIDESKFTTK 92
          RKGGLS  D SGGERA  EGIDIDESKF TK
Sbjct: 61 RKGGLSNNDMSGGERAEQEGIDIDESKFRTK 91

[Close]

BLAST of Lag0012348.1 vs. ExPASy Swiss-Prot
Match: Q05190 (Late embryogenesis abundant protein B19.1A OS=Hordeum vulgare OX=4513 GN=B19.1A PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.5e-31
Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 4  EQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMGRKG 63
          +QERS+LD  AR+GETVVPGGT G+SLEAQ++LA+GRSRGGQTR+EQ+GQEGY EMGRKG
Sbjct: 5  QQERSQLDRKAREGETVVPGGTGGKSLEAQQNLAEGRSRGGQTRREQMGQEGYSEMGRKG 64

Query: 64 GLSTMDKSGGERAADEGIDIDESKFTTKN 93
          GLS+ D+SGGERAA EGIDIDESKF TK+
Sbjct: 65 GLSSNDESGGERAAREGIDIDESKFKTKS 93

[Close]

BLAST of Lag0012348.1 vs. ExPASy Swiss-Prot
Match: Q08000 (Em protein H2 OS=Triticum aestivum OX=4565 GN=EMH2 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.5e-31
Identity = 70/89 (78.65%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 4  EQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMGRKG 63
          +QERS+LD  AR+GETVVPGGT G+SLEA E+LA+GRSRGGQTR+EQ+G+EGY EMGRKG
Sbjct: 5  QQERSQLDRKAREGETVVPGGTGGKSLEAHENLAEGRSRGGQTRREQMGEEGYSEMGRKG 64

Query: 64 GLSTMDKSGGERAADEGIDIDESKFTTKN 93
          GLST D+SGGERAA EGIDIDESKF TK+
Sbjct: 65 GLSTNDESGGERAAREGIDIDESKFKTKS 93

[Close]

BLAST of Lag0012348.1 vs. ExPASy Swiss-Prot
Match: P04568 (Em protein OS=Triticum aestivum OX=4565 GN=EM PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 69/89 (77.53%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 4  EQERSELDAGARQGETVVPGGTRGRSLEAQEHLAQGRSRGGQTRKEQLGQEGYQEMGRKG 63
          +QERS+LD  AR+GETVVPGGT G+SLEAQE+LA+GRSRGGQTR+EQ+G+EGY +MGRKG
Sbjct: 5  QQERSQLDRKAREGETVVPGGTGGKSLEAQENLAEGRSRGGQTRREQMGEEGYSQMGRKG 64

Query: 64 GLSTMDKSGGERAADEGIDIDESKFTTKN 93
          GLST D+SGG+RAA EGIDIDESKF TK+
Sbjct: 65 GLSTNDESGGDRAAREGIDIDESKFKTKS 93

The following BLAST results are available for this feature:

BLAST of Lag0012348.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031492949.1	1.1e-32	85.87	em protein H5 [Nymphaea colorata] >KAF3779899.1 Em protein H5 [Nymphaea thermaru...	[more]
KAA8517766.1	3.3e-32	84.78	hypothetical protein F0562_015229 [Nyssa sinensis]	[more]
XP_010264594.1	5.7e-32	86.02	PREDICTED: late embryogenesis abundant protein EMB564-like [Nelumbo nucifera] >D...	[more]
XP_008464209.1	2.2e-31	81.72	PREDICTED: protein EMB-1-like [Cucumis melo] >KAA0037756.1 protein EMB-1-like [C...	[more]
XP_038684374.1	2.8e-31	80.43	protein EMB-1-like isoform X2 [Tripterygium wilfordii]	[more]

BLAST of Lag0012348.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42755	2.0e-32	82.02	Em protein H5 OS=Triticum aestivum OX=4565 GN=EMH5 PE=2 SV=1	[more]
P17639	5.9e-32	80.22	Protein EMB-1 OS=Daucus carota OX=4039 GN=EMB-1 PE=1 SV=1	[more]
Q05190	6.5e-31	78.65	Late embryogenesis abundant protein B19.1A OS=Hordeum vulgare OX=4513 GN=B19.1A ...	[more]
Q08000	8.5e-31	78.65	Em protein H2 OS=Triticum aestivum OX=4565 GN=EMH2 PE=2 SV=1	[more]
P04568	1.1e-30	77.53	Em protein OS=Triticum aestivum OX=4565 GN=EM PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038956	Late embryogenesis abundant protein, LEA_5 subgroup	PFAM	PF00477	LEA_5	coord: 41..88 e-value: 9.7E-25 score: 87.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93
None	No IPR available	PANTHER	PTHR34671:SF19	EMBRYONIC ABUNDANT PROTEIN 1	coord: 1..91
IPR000389	Small hydrophilic plant seed protein	PANTHER	PTHR34671	EM-LIKE PROTEIN GEA1	coord: 1..91
IPR022377	Small hydrophilic plant seed protein, conserved site	PROSITE	PS00431	SMALL_HYDR_PLANT_SEED	coord: 17..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0012348	Lag0012348	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0012348.1.exon1	Lag0012348.1.exon1	exon
Lag0012348.1.exon2	Lag0012348.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0012348.1	cds.Lag0012348.1	CDS
cds.Lag0012348.1	cds.Lag0012348.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0012348.1	Lag0012348.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048700	acquisition of desiccation tolerance in seed
biological_process	GO:0009737	response to abscisic acid