Lag0011657.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011657.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	chr1: 30094201 .. 30096621 (+)
Sequence length	990
RNA-Seq Expression	Lag0011657.1
Synteny	Lag0011657.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACCACGAGCAGCAATATCTCTCCAACGGGATTTGAGCAGCCAAGCCCTAGCGGCTAGCACACAAACCTTCCTCCTTCGATGGTCTTGTACGCCGAGTTTTGTGAATTACCCATTCTTCAAATAACCTCAAATTGGAACACTCGTGGCCTAAGAAGTCCATATTTGTGAGTTCGATCCTCTTCGAATACCTTTTCAGTAAAGACCCAAGCTTTTTGATGAGATTTAATGGGTAATGGATTGCTCTAACCTCACTTTTTATTCGATTAAGCATTCAAATTTGTATATAGCCATTGGAATTGTTATGCTTTTAGGTTCGAGTTAGTTGTATGGGTGAGATTGAGGAAACAATCGTCAATTGGTAAATTTCCCTTTCTCTTCTTGTGGATTTTACCATTCAGGCCTGTTTGGATTGGATTTTGTTGATTTTGTTTATGGGTGTTTGTTGATTGGAATGGCTTCTGCTGCTGCAATTTGGGGTTTATGGTGAGGATTGAAAGAGAGACAAGATGTTCTTAGAGAAGGGTTAAAAAAAATCGTGAGTGACCTGAACAGAACCTGATCGGGTCAAATCTGAACCAGTTCATTTTTACACCCTTAATTTCCACATCTATGGTGTCTAATGGTCACTTAATTTTTTTTTCAACTGTGCATCAACTAAGGATTCTTGTGGCTTGCTTCCGTTATCACCTGTAATATAACTTTGTGGTAACGACCTGTCATGAACTTTTTTGGTGGACTTGATTATGAACCAGTTGACTTTACTTGCCATTTTTATTACTAAATTTAATCTTTTAGGATAAGGAAAATTGATGTTTGCATCTCTTGATGACTAGAAGTGATGGTAGTGTGTTAGGATTTTAATTTCTCCCAATGATTACCCCTACTCAACACAACTTATGATCTTCTAGTTAATTTTTAGTTCAACAATGTGGGAATGGAGATTCGAACCTCTAACCTTTTGATAGAAAATATAGTGCCTTATCTAGTTGAGTTATGCCCAAGTTATGATCTTTTGGTCAATTTCTTACCTTTTTTTTTTAATGTAGAAGTGATTCTTTTTTCTTCTTTACTTGTTTCATTTAGGTTCTTTTTTTTTACACCTGATTTTCTCTACTACGAGAATTACACATATGATGGTATGAGAACCATAGAAAAAGGATGTTGTTTGAAATGCTGAAGAAGCTTAGTTATTGGAATCCTAGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTTCTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCGTAACCATCGATGGATTGTCAATAACCAAATAAAAAATATCATCCTTCCTTGTCCTAATCAGACAGCACCAGTAAAGTTTCTCCAGAAGATGTTTAAAACCCTTGACCTTCAAGGCAAAGCCCTTAACTGGCTAAAATAGTATCCTTGCTGCTTTGAAGTTTATCTCCACAATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAGGAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCAATTGGCTAAGTTGCTGATGATGGCTTCAAATCATAGACTAAATGTTGTAAAGCTTGGTGAATTGAGGCGGAATTTTGGGCTTCCAGATGACTACTTGATAAGAATCGTTCCTAAATATTCTGATATGTTTCGAATTGTTAACTATAGCGGAAAAAGGAACTCAATGGAAATAGAACTGGTCTCTTGGAAACCAGAACTAGCAATTTCCATAATAGAATCTTCAGCTTGCAAACATGGGGTTGAGCAGTTTTCTCCGGCTCACTGCCAACAACTTGGGTAAATTCATGGGAAAGGTTTCATGAATTTAATGCCTCTCCATATATTTCTCCGTATGTAAACCCCGGAGGCTTGGTGCGAGGTACAAAGGAGAGGGAAAAGAGGACAGTGGGATTGATTCATGAGATATTGTCGTTGACTTTATGGAAAAAAGCATCAATTATGAAACTTGGCCATTTCAGCAAGGAATTCGGTCAGCTGCCAACGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTCTGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAATGGATCAGTACTAATTGACAAAGATCCACTGTGGTTGTAAAAGACAAGTTTGGAGAATTGATGCAGGAGGGACTTCATGAGTATAACAAGCGAAATCATTTAATGAATCTAGAAAAGAAGAGAACGAAGGGCATGCTTTTGGGTAGAACAGAAAAGAACAAAAGGAAAGACTTTGAACCAGATGATCCTGATGATCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGGAAGAGATTCTATCAATCTCTCTTTGATAATGGTGCTGCATAA

mRNA sequence

ATGCAACCACGAGCAGCAATATCTCTCCAACGGGATTTGAGCAGCCAAGCCCTAGCGGCTAGCACACAAACCTTCCTCCTTCGATGGTCTTGCCTGTTTGGATTGGATTTTGTTGATTTTGTTTATGGGTGTTTGTTGATTGGAATGGCTTCTGCTGCTGCAATTTGGGGTTTATGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTTCTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCTTTATCTCCACAATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAGGAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCAATTGGCTAAGTTGCTGATGATGGCTTCAAATCATAGACTAAATGTTGTAAAGCTTGGTGAATTGAGGCGGAATTTTGGGCTTCCAGATGACTACTTGATAAGAATCGTTCCTAAATATTCTGATATGTTTCGAATTGTTAACTATAGCGGAAAAAGGAACTCAATGGAAATAGAACTGGTCTCTTGGAAACCAGAACTAGCAATTTCCATAATAGAATCTTCAGCTTGCAAACATGGGGTTGAGCAGTTTTCTCCGGCTCACTGCCAACAACTTGGCAAGGAATTCGGTCAGCTGCCAACGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTCTGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAATGGATCAGAGGGACTTCATGAGTATAACAAGCGAAATCATTTAATGAATCTAGAAAAGAAGAGAACGAAGGGCATGCTTTTGGGTAGAACAGAAAAGAACAAAAGGAAAGACTTTGAACCAGATGATCCTGATGATCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGGAAGAGATTCTATCAATCTCTCTTTGATAATGGTGCTGCATAA

Coding sequence (CDS)

ATGCAACCACGAGCAGCAATATCTCTCCAACGGGATTTGAGCAGCCAAGCCCTAGCGGCTAGCACACAAACCTTCCTCCTTCGATGGTCTTGCCTGTTTGGATTGGATTTTGTTGATTTTGTTTATGGGTGTTTGTTGATTGGAATGGCTTCTGCTGCTGCAATTTGGGGTTTATGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTTCTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCTTTATCTCCACAATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAGGAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCAATTGGCTAAGTTGCTGATGATGGCTTCAAATCATAGACTAAATGTTGTAAAGCTTGGTGAATTGAGGCGGAATTTTGGGCTTCCAGATGACTACTTGATAAGAATCGTTCCTAAATATTCTGATATGTTTCGAATTGTTAACTATAGCGGAAAAAGGAACTCAATGGAAATAGAACTGGTCTCTTGGAAACCAGAACTAGCAATTTCCATAATAGAATCTTCAGCTTGCAAACATGGGGTTGAGCAGTTTTCTCCGGCTCACTGCCAACAACTTGGCAAGGAATTCGGTCAGCTGCCAACGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTCTGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAATGGATCAGAGGGACTTCATGAGTATAACAAGCGAAATCATTTAATGAATCTAGAAAAGAAGAGAACGAAGGGCATGCTTTTGGGTAGAACAGAAAAGAACAAAAGGAAAGACTTTGAACCAGATGATCCTGATGATCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGGAAGAGATTCTATCAATCTCTCTTTGATAATGGTGCTGCATAA

Protein sequence

MQPRAAISLQRDLSSQALAASTQTFLLRWSCLFGLDFVDFVYGCLLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALSLYLHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSACKHGVEQFSPAHCQQLGKEFGQLPTKLNTLLLKHPGIFSVSNKYQIYTVLLREGYNGSEGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQSLFDNGAA

Homology

[Close]

BLAST of Lag0011657.1 vs. NCBI nr
Match: XP_022993888.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima] >XP_022993889.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima])

HSP 1 Score: 403.3 bits (1035), Expect = 2.0e-108
Identity = 237/408 (58.09%), Postives = 253/408 (62.01%), Query Frame = 0


Query: 56  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-------------------------- 115
           W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                          
Sbjct: 12  WDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVK 71

Query: 116 ---------------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPI 175
                                      +YLH+DEYYFRLTKRMMALVEEEETVKDMQEP 
Sbjct: 72  FLQKKFKTLDCQGKALNWLKKYPICFEVYLHDDEYYFRLTKRMMALVEEEETVKDMQEPA 131

Query: 176 FVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSME 235
           FVE+LAKLLMMASN RLNV+KLGELRRNFGLPDDYLIRIVPK+SDMFRIVNY+GKRNSME
Sbjct: 132 FVERLAKLLMMASNQRLNVLKLGELRRNFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSME 191

Query: 236 IELVSWKPELAISIIESSACKHGVEQ---------------------------------- 295
           IELVSWKPELAIS IESSACKHGVE                                   
Sbjct: 192 IELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYISPYAIHAG 251

Query: 296 ------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV 330
                                   +  A   +LG   +EFG LP KLN LLLKHPGIF V
Sbjct: 252 LVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFG-LPLKLNALLLKHPGIFYV 311

[Close]

BLAST of Lag0011657.1 vs. NCBI nr
Match: KAG6578890.1 (Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 401.0 bits (1029), Expect = 1.0e-107
Identity = 236/408 (57.84%), Postives = 252/408 (61.76%), Query Frame = 0


Query: 56  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-------------------------- 115
           W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                          
Sbjct: 12  WDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVK 71

Query: 116 ---------------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPI 175
                                      +YLHNDEYYFRLTKRMMALVEEEET+KDMQEP 
Sbjct: 72  FLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETIKDMQEPA 131

Query: 176 FVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSME 235
           FVE+LAKLLMMASN RLNV+KLGEL+R FGLPDDYLIRIVPK+SDMFRIVNY+GKRNSME
Sbjct: 132 FVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSME 191

Query: 236 IELVSWKPELAISIIESSACKHGVEQ---------------------------------- 295
           IELVSWKPELAIS IESSACKHGVE                                   
Sbjct: 192 IELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYISPYANHAG 251

Query: 296 ------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV 330
                                   +  A   +LG   +EFG LP KLN LLLKHPGIF V
Sbjct: 252 LVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFG-LPLKLNALLLKHPGIFYV 311

[Close]

BLAST of Lag0011657.1 vs. NCBI nr
Match: XP_023551426.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.0 bits (1029), Expect = 1.0e-107
Identity = 237/408 (58.09%), Postives = 251/408 (61.52%), Query Frame = 0


Query: 56  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-------------------------- 115
           W   LSSPY  K F RNFSLWSMKKDPDLESALS                          
Sbjct: 12  WDPRLSSPYCLKCFPRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVK 71

Query: 116 ---------------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPI 175
                                      +YLHNDEYYFRLTKRMMALVEEEETVKDMQEP 
Sbjct: 72  FLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETVKDMQEPA 131

Query: 176 FVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSME 235
           FVE+LAKLLMMASN RLNV+KLGELRRNFGLPDDYLIRIVPK+SDMFRIVNY+GKRNSME
Sbjct: 132 FVERLAKLLMMASNQRLNVLKLGELRRNFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSME 191

Query: 236 IELVSWKPELAISIIESSACKHGVEQ---------------------------------- 295
           IELVSWKPELAIS IESSACKHGVE                                   
Sbjct: 192 IELVSWKPELAISSIESSACKHGVEPTFSCSLPTTWVHSWEKFHEFNASPYISPYANHAG 251

Query: 296 ------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV 330
                                   +  A   +LG   +EFG LP KLN LLLKHPGIF V
Sbjct: 252 LVKDTNEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFG-LPLKLNALLLKHPGIFYV 311

[Close]

BLAST of Lag0011657.1 vs. NCBI nr
Match: XP_022939501.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata])

HSP 1 Score: 401.0 bits (1029), Expect = 1.0e-107
Identity = 236/408 (57.84%), Postives = 252/408 (61.76%), Query Frame = 0


Query: 56  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-------------------------- 115
           W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                          
Sbjct: 12  WDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVK 71

Query: 116 ---------------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPI 175
                                      +YLHNDEYYFRLTKRMMALVEEEET+KDMQEP 
Sbjct: 72  FLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETIKDMQEPA 131

Query: 176 FVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSME 235
           FVE+LAKLLMMASN RLNV+KLGEL+R FGLPDDYLIRIVPK+SDMFRIVNY+GKRNSME
Sbjct: 132 FVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSME 191

Query: 236 IELVSWKPELAISIIESSACKHGVEQ---------------------------------- 295
           IELVSWKPELAIS IESSACKHGVE                                   
Sbjct: 192 IELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYISPYANHAG 251

Query: 296 ------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV 330
                                   +  A   +LG   +EFG LP KLN LLLKHPGIF V
Sbjct: 252 LVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFG-LPLKLNALLLKHPGIFYV 311

[Close]

BLAST of Lag0011657.1 vs. NCBI nr
Match: XP_038886354.1 (protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_038886355.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_038886356.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_038886357.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 1.5e-106
Identity = 234/408 (57.35%), Postives = 250/408 (61.27%), Query Frame = 0


Query: 56  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-------------------------- 115
           W    SSPY  KYFLRNFSLWSMKKDPDLESALS                          
Sbjct: 12  WDPRFSSPYVLKYFLRNFSLWSMKKDPDLESALSRNRRWIANNQIKNIILRCPDQATPVK 71

Query: 116 ---------------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPI 175
                                      +YLHNDE YFRLTKRMMALVEEEE VKDMQEP+
Sbjct: 72  FLQKKFKTLDLQGKALNWLKKYPCCFEVYLHNDERYFRLTKRMMALVEEEEAVKDMQEPV 131

Query: 176 FVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSME 235
            V++LAKLLMMASN RLNVVKLGEL++NFGL DDYLIRIVPKYSDMFRIVNY+GK+NSME
Sbjct: 132 VVKRLAKLLMMASNQRLNVVKLGELKQNFGLSDDYLIRIVPKYSDMFRIVNYTGKKNSME 191

Query: 236 IELVSWKPELAISIIESSACKHGVE-------------------QF----------SPAH 295
           IEL+SWKPELAIS IESSACKHGVE                   +F          +PA 
Sbjct: 192 IELISWKPELAISNIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYVSPYENPAG 251

Query: 296 CQQ--------------------------------LGKEFGQLPTKLNTLLLKHPGIFSV 330
             Q                                  +EFG LP KLN LLLKHPGIF V
Sbjct: 252 LVQGTKEMEKRIVGLIHEILSLTLWKKASIIKLGHFSREFG-LPLKLNALLLKHPGIFYV 311

[Close]

BLAST of Lag0011657.1 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.5e-08
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 99  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYL 158
           FRLT     L  +E  +K+  E + V +L KLLMM+ + R+ + K+  L+ + GLP ++ 
Sbjct: 140 FRLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFR 199

Query: 159 IRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE 199
             I  +Y   FR+V          +EL  W PELA+S  E
Sbjct: 200 DTICLRYPQYFRVVQMD---RGPGLELTHWDPELAVSAAE 236

[Close]

BLAST of Lag0011657.1 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-07
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 99  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYL 158
           FRLT     L  +E  +++  E + V +L KLLMM+   R+ + K+  L+ + GLP ++ 
Sbjct: 134 FRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFR 193

Query: 159 IRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE 199
             +  +Y   FR+V          +EL  W PELA+S  E
Sbjct: 194 DTVCLRYPQYFRVVRMD---RGPALELTHWDPELAVSAAE 230

[Close]

BLAST of Lag0011657.1 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-06
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 99  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYL 158
           F++T     L  +E  +++  E + V +L KL+MM+ + R+ + K+  L+ + GLP ++ 
Sbjct: 155 FKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFR 214

Query: 159 IRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESS 201
             I  +Y   FR+V          +EL  W PELA+S  E S
Sbjct: 215 DTICQRYPQYFRVV---PTPRGPALELTHWDPELAVSAAELS 253

[Close]

BLAST of Lag0011657.1 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.0e-06
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 98  YFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDY 157
           Y RLT++ +  +  E      Q P  V +L KL+MM++  R+ +  +   R  FGLP+D+
Sbjct: 124 YCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDF 183

Query: 158 LIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE 199
              ++ K+   FR+++    R+   IE+V   P L+I  IE
Sbjct: 184 EYSVILKHPQFFRLIDGEETRDKY-IEIVEKDPNLSICAIE 223

[Close]

BLAST of Lag0011657.1 vs. ExPASy TrEMBL
Match: A0A6J1K3L2 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111489755 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 9.8e-109
Identity = 237/408 (58.09%), Postives = 253/408 (62.01%), Query Frame = 0


Query: 56  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-------------------------- 115
           W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                          
Sbjct: 12  WDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVK 71

Query: 116 ---------------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPI 175
                                      +YLH+DEYYFRLTKRMMALVEEEETVKDMQEP 
Sbjct: 72  FLQKKFKTLDCQGKALNWLKKYPICFEVYLHDDEYYFRLTKRMMALVEEEETVKDMQEPA 131

Query: 176 FVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSME 235
           FVE+LAKLLMMASN RLNV+KLGELRRNFGLPDDYLIRIVPK+SDMFRIVNY+GKRNSME
Sbjct: 132 FVERLAKLLMMASNQRLNVLKLGELRRNFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSME 191

Query: 236 IELVSWKPELAISIIESSACKHGVEQ---------------------------------- 295
           IELVSWKPELAIS IESSACKHGVE                                   
Sbjct: 192 IELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYISPYAIHAG 251

Query: 296 ------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV 330
                                   +  A   +LG   +EFG LP KLN LLLKHPGIF V
Sbjct: 252 LVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFG-LPLKLNALLLKHPGIFYV 311

[Close]

BLAST of Lag0011657.1 vs. ExPASy TrEMBL
Match: A0A6J1FG34 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445385 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 4.9e-108
Identity = 236/408 (57.84%), Postives = 252/408 (61.76%), Query Frame = 0


Query: 56  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-------------------------- 115
           W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                          
Sbjct: 12  WDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVK 71

Query: 116 ---------------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPI 175
                                      +YLHNDEYYFRLTKRMMALVEEEET+KDMQEP 
Sbjct: 72  FLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETIKDMQEPA 131

Query: 176 FVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSME 235
           FVE+LAKLLMMASN RLNV+KLGEL+R FGLPDDYLIRIVPK+SDMFRIVNY+GKRNSME
Sbjct: 132 FVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSME 191

Query: 236 IELVSWKPELAISIIESSACKHGVEQ---------------------------------- 295
           IELVSWKPELAIS IESSACKHGVE                                   
Sbjct: 192 IELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYISPYANHAG 251

Query: 296 ------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV 330
                                   +  A   +LG   +EFG LP KLN LLLKHPGIF V
Sbjct: 252 LVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFG-LPLKLNALLLKHPGIFYV 311

[Close]

BLAST of Lag0011657.1 vs. ExPASy TrEMBL
Match: A0A5D3DGZ3 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00680 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.5e-101
Identity = 226/419 (53.94%), Postives = 248/419 (59.19%), Query Frame = 0


Query: 45  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS--------------- 104
           +L  +   +  W   LSSP   KY LRNFSLWSMKKDPDLESALS               
Sbjct: 1   MLYKVLQKSRYWDPGLSSPCPLKYVLRNFSLWSMKKDPDLESALSRNRRWIANNQIKNII 60

Query: 105 --------------------------------------LYLHNDEYYFRLTKRMMALVEE 164
                                                 +YL+NDE+YFRLTKRMMALVEE
Sbjct: 61  LRCPDQAAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLNNDEHYFRLTKRMMALVEE 120

Query: 165 EETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRI 224
           EE VKDMQEP  V++L KLLMMASN RLNV+KL ELRRNFGLPDD+LIRI+PK+SD+FRI
Sbjct: 121 EEVVKDMQEPAIVKRLTKLLMMASNQRLNVLKLSELRRNFGLPDDFLIRIIPKHSDIFRI 180

Query: 225 VNYSGKRNSMEIELVSWKPELAISIIESSACKHGVE------------------------ 284
           VNY+GK+NSMEIEL+SWKPELAIS IESSACKHGVE                        
Sbjct: 181 VNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFNEFNAS 240

Query: 285 -----QFSPAHCQQ--------------------------------LGKEFGQLPTKLNT 330
                  +PA   Q                                  KEFG LP KLN 
Sbjct: 241 PYVSPYVNPAGLVQGTREMEKRTVGLIHEILSLTLWKKASIIKLGHFSKEFG-LPLKLNA 300

[Close]

BLAST of Lag0011657.1 vs. ExPASy TrEMBL
Match: A0A0A0KEF0 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 1.3e-100
Identity = 225/416 (54.09%), Postives = 246/416 (59.13%), Query Frame = 0


Query: 45  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS--------------- 104
           +L  +   +  W   LSSP   KY LRNFSLWSMKKDPDLESALS               
Sbjct: 1   MLYKVLQKSRYWDPGLSSPCPLKYILRNFSLWSMKKDPDLESALSRNRRWIANNQIKNII 60

Query: 105 --------------------------------------LYLHNDEYYFRLTKRMMALVEE 164
                                                 +YL NDE+YFRLTKRMMALVEE
Sbjct: 61  LRCPDQAAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLDNDEHYFRLTKRMMALVEE 120

Query: 165 EETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRI 224
           EE VKDMQEP  V++L KLLMMASN RLNVVKL ELRRNFGLPDD+LIRI+PK+SD+FRI
Sbjct: 121 EEVVKDMQEPAIVKRLTKLLMMASNQRLNVVKLSELRRNFGLPDDFLIRIIPKHSDIFRI 180

Query: 225 VNYSGKRNSMEIELVSWKPELAISIIESSACKHGVEQ----------------------- 284
           VNY+GK+NSMEIEL+SWKPELAIS IESSACKHGVE                        
Sbjct: 181 VNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFNEFNAS 240

Query: 285 -----------------------------------FSPAHCQQLG---KEFGQLPTKLNT 327
                                              +  A   +LG   KEFG LP KLN 
Sbjct: 241 PYVSPYVNPAGLVQGTREMEKRTVGLIHEILSLTLWKKASIIKLGHFTKEFG-LPLKLNA 300

[Close]

BLAST of Lag0011657.1 vs. ExPASy TrEMBL
Match: A0A1S4DTX7 (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103485622 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.6e-98
Identity = 221/419 (52.74%), Postives = 243/419 (58.00%), Query Frame = 0


Query: 45  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS--------------- 104
           +L  +   +  W   LSSP   KY LRNFSLWSMKKDPDLESALS               
Sbjct: 1   MLYKVLQKSRYWDPGLSSPCPLKYVLRNFSLWSMKKDPDLESALSRNRRWIANNQIKNII 60

Query: 105 --------------------------------------LYLHNDEYYFRLTKRMMALVEE 164
                                                 +YL+NDE+YFRLTKRMMALVEE
Sbjct: 61  LRCPDQAAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLNNDEHYFRLTKRMMALVEE 120

Query: 165 EETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRI 224
           EE VKDMQEP  V++L KLLMMASN RLNV+KL ELRRNFGLPDD+LIRI+PK+SD+FRI
Sbjct: 121 EEVVKDMQEPAIVKRLTKLLMMASNQRLNVLKLSELRRNFGLPDDFLIRIIPKHSDIFRI 180

Query: 225 VNYSGKRNSMEIELVSWKPELAISIIESSACKHGVE------------------------ 284
           VNY+GK+NSMEIEL+SWKPELAIS IESSACKHGVE                        
Sbjct: 181 VNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFNEFNAS 240

Query: 285 -----QFSPAHCQQ--------------------------------LGKEFGQLPTKLNT 330
                  +PA   Q                                  KEFG LP KLN 
Sbjct: 241 PYVSPYVNPAGLVQGTREMEKRTVGLIHEILSLTLWKKASIIKLGHFSKEFG-LPLKLNA 300

[Close]

BLAST of Lag0011657.1 vs. TAIR 10
Match: AT2G31290.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 261.5 bits (667), Expect = 8.9e-70
Identity = 167/406 (41.13%), Postives = 210/406 (51.72%), Query Frame = 0


Query: 60  LSSPYAFKYFLRNFSLWSMKKDPDLESALS------------------------------ 119
           L + YA    +R FSLWS KKDPDLESALS                              
Sbjct: 11  LGTKYA-PLLIRRFSLWSTKKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQK 70

Query: 120 -----------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQ 179
                                  +YL NDEYY RLTK MM LVEEEE VKD QEP+  ++
Sbjct: 71  KFKTLDLQGKALNWLKKYPCCFHVYLENDEYYCRLTKPMMTLVEEEELVKDTQEPVLADR 130

Query: 180 LAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELV 239
           LAKLLM++ N RLNVVKL E +R+FG PDDY+IRIVPKYSD+FR+VNYSG+++SMEIEL+
Sbjct: 131 LAKLLMLSVNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELL 190

Query: 240 SWKPELAISIIESSACKHGVE--------------------------------------- 299
            WKPELA+S +E++A K G E                                       
Sbjct: 191 LWKPELAVSAVEAAAKKCGSEPSFSCSLPSTWTKPWERFMEFNAFPYISPYEDHGDLVEG 250

Query: 300 ----------------------QFSPAHCQQLGKEFGQLPTKLNTLLLKHPGIFSVSNKY 327
                                 + S        +EFG LP KLN +LLKHPGIF V NKY
Sbjct: 251 SKESEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFG-LPEKLNGMLLKHPGIFYVGNKY 310

[Close]

BLAST of Lag0011657.1 vs. TAIR 10
Match: AT2G31290.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 261.5 bits (667), Expect = 8.9e-70
Identity = 167/406 (41.13%), Postives = 210/406 (51.72%), Query Frame = 0


Query: 60  LSSPYAFKYFLRNFSLWSMKKDPDLESALS------------------------------ 119
           L + YA    +R FSLWS KKDPDLESALS                              
Sbjct: 11  LGTKYA-PLLIRRFSLWSTKKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQK 70

Query: 120 -----------------------LYLHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQ 179
                                  +YL NDEYY RLTK MM LVEEEE VKD QEP+  ++
Sbjct: 71  KFKTLDLQGKALNWLKKYPCCFHVYLENDEYYCRLTKPMMTLVEEEELVKDTQEPVLADR 130

Query: 180 LAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELV 239
           LAKLLM++ N RLNVVKL E +R+FG PDDY+IRIVPKYSD+FR+VNYSG+++SMEIEL+
Sbjct: 131 LAKLLMLSVNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELL 190

Query: 240 SWKPELAISIIESSACKHGVE--------------------------------------- 299
            WKPELA+S +E++A K G E                                       
Sbjct: 191 LWKPELAVSAVEAAAKKCGSEPSFSCSLPSTWTKPWERFMEFNAFPYISPYEDHGDLVEG 250

Query: 300 ----------------------QFSPAHCQQLGKEFGQLPTKLNTLLLKHPGIFSVSNKY 327
                                 + S        +EFG LP KLN +LLKHPGIF V NKY
Sbjct: 251 SKESEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFG-LPEKLNGMLLKHPGIFYVGNKY 310

[Close]

BLAST of Lag0011657.1 vs. TAIR 10
Match: AT3G63090.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-14
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 98  YFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDY 157
           + R T R+ A ++EE+ +    EP+ V +L +LLMMA +  ++  KL  ++R+FG P+D+
Sbjct: 117 FLRPTPRLRAFLDEEQRIYSENEPLLVSKLCQLLMMAKDKVISADKLVHVKRDFGFPNDF 176

Query: 158 LIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSA 202
           L+++V KY + FR+     +  S  +ELVSW P+ A S IE  A
Sbjct: 177 LMKLVQKYPNYFRLTGLPEEGKSF-LELVSWNPDFAKSKIELRA 219

[Close]

BLAST of Lag0011657.1 vs. TAIR 10
Match: AT1G79120.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-10
Identity = 35/116 (30.17%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 93  HNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFG 152
           H +  +  LT++   +  EE    +  EPI V  L KLLMM+ + R+ + K+  ++   G
Sbjct: 130 HKEPPFVMLTEKAKKIAAEESEATESMEPILVNNLRKLLMMSVDCRVPLEKVEFIQSAMG 189

Query: 153 LPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSACKHGVEQ 209
           LP D+   ++PKY++ F +   +GK N   + L +W   LAI+  E    + G  +
Sbjct: 190 LPQDFKSTLIPKYTEFFSLKVINGKVN---LVLENWDSSLAITAREDRLSREGFSE 242

[Close]

BLAST of Lag0011657.1 vs. TAIR 10
Match: AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-09
Identity = 61/259 (23.55%), Postives = 105/259 (40.54%), Query Frame = 0


Query: 125 EQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIE 184
           ++L KLLM+   +++ +  L  L+ + GLP DY+  +VP++ D FR++    +  S E+E
Sbjct: 136 DRLLKLLMINRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELE 195

Query: 185 LVSWKPELAISIIES--------------------------------------------- 244
           LV W  E A+S++E                                              
Sbjct: 196 LVCWSNEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYI 255

Query: 245 ---------SACKHGVEQFSPAHCQQLGK----------------EFGQLPTKLNTLLLK 304
                    SA     ++++ A   ++                  EF  L ++   +L  
Sbjct: 256 SPYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHN 315

Query: 305 HPGIFSVSNKYQIYTVLLREGY------NGSEGLHEYNKRNHLMNLEKKRTKGMLLGRTE 307
           HPGIF +S+K + +TV+LR+GY        +E +   N+   LMN  KK  K +     +
Sbjct: 316 HPGIFYLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNTVKKDNKAVSSSSKK 375

The following BLAST results are available for this feature:

BLAST of Lag0011657.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993888.1	2.0e-108	58.09	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima] >XP_022993889.1 protein R...	[more]
KAG6578890.1	1.0e-107	57.84	Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_023551426.1	1.0e-107	58.09	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022939501.1	1.0e-107	57.84	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata]	[more]
XP_038886354.1	1.5e-106	57.35	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_0388...	[more]

BLAST of Lag0011657.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q65XL5	5.5e-08	35.00	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	1.6e-07	33.00	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
A0MFS5	1.0e-06	31.37	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q689D6	3.0e-06	31.68	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]

BLAST of Lag0011657.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3L2	9.8e-109	58.09	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111489755 ...	[more]
A0A6J1FG34	4.9e-108	57.84	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]
A0A5D3DGZ3	1.5e-101	53.94	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0KEF0	1.3e-100	54.09	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 S...	[more]
A0A1S4DTX7	1.6e-98	52.74	LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656...	[more]

BLAST of Lag0011657.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31290.1	8.9e-70	41.13	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G31290.2	8.9e-70	41.13	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G63090.1	1.1e-14	38.46	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G79120.1	2.1e-10	30.17	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G71850.1	8.7e-09	23.55	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 213..264 e-value: 2.7E-11 score: 43.0 coord: 90..200 e-value: 9.1E-31 score: 107.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..314
None	No IPR available	PANTHER	PTHR31476:SF5	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN	coord: 219..317 coord: 90..208
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 219..317 coord: 90..208

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0011657	Lag0011657	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0011657.1.exon1	Lag0011657.1.exon1	exon
Lag0011657.1.exon2	Lag0011657.1.exon2	exon
Lag0011657.1.exon3	Lag0011657.1.exon3	exon
Lag0011657.1.exon4	Lag0011657.1.exon4	exon
Lag0011657.1.exon5	Lag0011657.1.exon5	exon
Lag0011657.1.exon6	Lag0011657.1.exon6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0011657.1	cds.Lag0011657.1	CDS
cds.Lag0011657.1	cds.Lag0011657.1_2	CDS
cds.Lag0011657.1	cds.Lag0011657.1_3	CDS
cds.Lag0011657.1	cds.Lag0011657.1_4	CDS
cds.Lag0011657.1	cds.Lag0011657.1_5	CDS
cds.Lag0011657.1	cds.Lag0011657.1_6	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0011657.1	Lag0011657.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding