Lag0009275.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009275.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nucleoporin NUP188-like protein
Location	chr9: 37625508 .. 37626938 (+)
Sequence length	390
RNA-Seq Expression	Lag0009275.1
Synteny	Lag0009275.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGACTTCAAGCGTGCAGGAGCAGGTCACAAACACTAGCAACTTCCTTCGAAGGGCTAGGAGATAGGCTCTTTCTTCCCTTTTTCTCTGTTGGCTCTCTCTATTGCATCAATCTTTCGGTCTGTGTGCCTTGTGTGTACATACCCTCAAATATTAGGTAAATCTTCTATTAATATCTCTCAGCGAACAGGGTCACACATCACCATTAGGTCAGAAACACATCTTTTTTCACTAAGCTCTTGGATAATTCAGCCAGCTCATTTAATGAGCTCTGGCACGTGCACATACTTAAATTTAGTTGCCACAACCAGCAATTTAGCCCATCTCCTACAACAAACACATGGTTAAGCGATAAAAAAGTGATGTCTCATGCTTTAGGCGGGAAAAGACCTCTTGTGCTTTCCTAATTTGTTTAATTTTCTCCAAGTATCCAAGCAGTTCCTTAATCTTCTAATAGTCTAGACTCTACAGTTTCCATTAGTCCCCATATTTGCAGCTTTTGCTTTCATTAATGGATATGCATGAGTATGGCTGACAATTTATTTATTTTGTTTATTTATTATTTCTCTTTCTATTATTTGTATCATTAATTATTATCTGTACCTAAGATTTATAGGTTGTGATATTTCTGCAGAGAGTACAAGTCGGTGCAGCAAGGGTACTATCTATGTTATTGTTAATCACAGACGATTTGCAACCTCATTTGTCTAGTGCATGCTTTAGTCTTGACGATGAGCAGGTATGATACTCTTCCTTGAGCTATGACCACATTGATGATTTCTGTTAATTGGACTAATTATTTCTGATTGAGATGTTTCTTTATTCTCATGGTTTTAGATCACAGATTTGAGGCATTCAATTGAGTGCATACTTCTTAAGAAATCTGTGTGGAACGAAGATCTCTTTGTTGCTATAGTTAACATGTTGACTTCAGCAGCACTTTATCAGGTTGGTTATTAAATCTACCTATTATGTGGTTATAAACATTGAGGAGAATAACAGTGGTGAATATATTCTTGAGTAAATATTTGCATCCTTATGTATGCTTGTTATGAGTACCCGAGAGATCAATAATATACCTTTTTATTCTAGTTATGACCTCTATTGAAACTTCTGTAGGAGAGTGCTTGAGTGGAACTACAAAGCTGTGTTTGGTCTTGTATGTGTAAGGTGAGTCTAGTTCCCTAGAGGTTTTTGGAAACCTGTAGTTTAATTGTCTTCTCTTGTGTGTCTGGCCCTCCTAAGCTCATGGCATGGAACATCACTTTCTATGATGGTATAGCTTAACGTGGGTTGGCTTCCATATCTTTGGGCTTGTGCAGAGAAGGTGATACCTTGGTGGTCAATGTGTGGTTTTGTTCAATTAGTGAATCAAGATCATCATGAGTGTTCACTACCCACCTTGCAAGGGTCTACTGCAGGCGCTTAA

mRNA sequence

ATGCCGACTTCAAGCGTGCAGGAGCAGAGAGTACAAGTCGGTGCAGCAAGGGTACTATCTATGTTATTGTTAATCACAGACGATTTGCAACCTCATTTGTCTAGTGCATGCTTTAGTCTTGACGATGAGCAGATCACAGATTTGAGGCATTCAATTGAGTGCATACTTCTTAAGAAATCTGTGTGGAACGAAGATCTCTTTGTTGCTATAGTTAACATGTTGACTTCAGCAGCACTTTATCAGCTTAACGTGGGTTGGCTTCCATATCTTTGGGCTTGTGCAGAGAAGGTGATACCTTGGTGGTCAATGTGTGGTTTTGTTCAATTAGTGAATCAAGATCATCATGAGTGTTCACTACCCACCTTGCAAGGGTCTACTGCAGGCGCTTAA

Coding sequence (CDS)

ATGCCGACTTCAAGCGTGCAGGAGCAGAGAGTACAAGTCGGTGCAGCAAGGGTACTATCTATGTTATTGTTAATCACAGACGATTTGCAACCTCATTTGTCTAGTGCATGCTTTAGTCTTGACGATGAGCAGATCACAGATTTGAGGCATTCAATTGAGTGCATACTTCTTAAGAAATCTGTGTGGAACGAAGATCTCTTTGTTGCTATAGTTAACATGTTGACTTCAGCAGCACTTTATCAGCTTAACGTGGGTTGGCTTCCATATCTTTGGGCTTGTGCAGAGAAGGTGATACCTTGGTGGTCAATGTGTGGTTTTGTTCAATTAGTGAATCAAGATCATCATGAGTGTTCACTACCCACCTTGCAAGGGTCTACTGCAGGCGCTTAA

Protein sequence

MPTSSVQEQRVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVAIVNMLTSAALYQLNVGWLPYLWACAEKVIPWWSMCGFVQLVNQDHHECSLPTLQGSTAGA

Homology

[Close]

BLAST of Lag0009275.1 vs. NCBI nr
Match: XP_023533343.1 (uncharacterized protein LOC111795266 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 10  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVA 69
           RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVA
Sbjct: 877 RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIGCILLKKSVWDEDLFVA 936

Query: 70  IVNMLTSAALYQLNVGWLPYLWACAEKVIPWWSMCGFVQLVNQDHHECSLPTLQG 125
           I+NMLTSAALYQ    +L  L A  E +    +  G V   +++    SLPT  G
Sbjct: 937 IINMLTSAALYQ--PSFLVALLASKENLNVQLNSSGGVNHQSKE----SLPTSSG 985

[Close]

BLAST of Lag0009275.1 vs. NCBI nr
Match: XP_022947489.1 (uncharacterized protein LOC111451342 [Cucurbita moschata])

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-28
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 10  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVA 69
           RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVA
Sbjct: 877 RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIGCILLKKSVWDEDLFVA 936

Query: 70  IVNMLTSAALYQ 82
           I+NMLTSAALYQ
Sbjct: 937 IINMLTSAALYQ 948

[Close]

BLAST of Lag0009275.1 vs. NCBI nr
Match: KAG6605000.1 (Nucleoporin 188-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-28
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 10  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVA 69
           RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVA
Sbjct: 877 RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIGCILLKKSVWDEDLFVA 936

Query: 70  IVNMLTSAALYQ 82
           I+NMLTSAALYQ
Sbjct: 937 IINMLTSAALYQ 948

[Close]

BLAST of Lag0009275.1 vs. NCBI nr
Match: KAG7035034.1 (Nucleoporin-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-28
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 10  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVA 69
           RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CILLKKSVW+EDLFVA
Sbjct: 896 RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIGCILLKKSVWDEDLFVA 955

Query: 70  IVNMLTSAALYQ 82
           I+NMLTSAALYQ
Sbjct: 956 IINMLTSAALYQ 967

[Close]

BLAST of Lag0009275.1 vs. NCBI nr
Match: XP_022970819.1 (uncharacterized protein LOC111469682 [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-28
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 10  RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIECILLKKSVWNEDLFVA 69
           RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSI CI+LKKSVW+EDLFVA
Sbjct: 877 RVQVGAARVLSMLLLITDDLQPHLSSACFSLDDEQITDLRHSIGCIILKKSVWDEDLFVA 936

Query: 70  IVNMLTSAALYQ 82
           I+NMLTSAALYQ
Sbjct: 937 IINMLTSAALYQ 948

The following BLAST results are available for this feature:

BLAST of Lag0009275.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533343.1	1.1e-28	69.57	uncharacterized protein LOC111795266 [Cucurbita pepo subsp. pepo]	[more]
XP_022947489.1	2.4e-28	95.83	uncharacterized protein LOC111451342 [Cucurbita moschata]	[more]
KAG6605000.1	2.4e-28	95.83	Nucleoporin 188-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035034.1	2.4e-28	95.83	Nucleoporin-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022970819.1	4.0e-28	94.44	uncharacterized protein LOC111469682 [Cucurbita maxima]	[more]

BLAST of Lag0009275.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0009275	Lag0009275	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0009275.1.exon1	Lag0009275.1.exon1	exon
Lag0009275.1.exon2	Lag0009275.1.exon2	exon
Lag0009275.1.exon3	Lag0009275.1.exon3	exon
Lag0009275.1.exon4	Lag0009275.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0009275.1	cds.Lag0009275.1	CDS
cds.Lag0009275.1	cds.Lag0009275.1_2	CDS
cds.Lag0009275.1	cds.Lag0009275.1_3	CDS
cds.Lag0009275.1	cds.Lag0009275.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0009275.1	Lag0009275.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0006405	RNA export from nucleus
cellular_component	GO:0044611	nuclear pore inner ring
molecular_function	GO:0017056	structural constituent of nuclear pore