Lag0005408.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005408.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr6: 17002852 .. 17003412 (+)
Sequence length	561
RNA-Seq Expression	Lag0005408.1
Synteny	Lag0005408.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACATTTTTGCATGTCATCACTCGACACGTCACTTGGGTGAGTAGTCGTGCGATTGTGGCGCCTCGACTCCCCAACTCAAGCACACGTCTCACAGCACGTCACCATTACCGATCCCACCCCACAACCGATGCAATGCCTGAGACCCAAGAATGCCCACCGCCGATGGTAGTGCAGCTCCCTTGGACCTCCGACGCATGCCTCGGGGCGGAAGCCCAAGGCGACCGGCAACATCGTAACATCCCGCACCCAATGAGGTTCATGTCGTGTGCCGAGGCACCCAATCCCACCCTACCATGCACGTTCTACCGCCATGTCGCCCGCCCTTCTCAGGCCCCCGTGAGGAGCCCTGAGGTTGGCACGCAGCACCGCAACATCCCGCACCTGACGAGGTTCATGTCGTGTGCCCAAAAGCATTTGGCCCCGCCCCATCATGCATGTTCTGCCGCCGCGCCGCCCGTCCTCCCCAGGCCTCCGGGTGGATGCCCGAGGACTACCAGCAACACCGCAACATCCCACGTCCGACAAGGTTCATGCCACACGCCTGAAGGCACCTGA

mRNA sequence

ATGATGACATTTTTGCATGTCATCACTCGACACGTCACTTGGGTGAGTAGTCGTGCGATTGTGGCGCCTCGACTCCCCAACTCAAGCACACGTCTCACAGCACGTCACCATTACCGATCCCACCCCACAACCGATGCAATGCCTGAGACCCAAGAATGCCCACCGCCGATGGTAGTGCAGCTCCCTTGGACCTCCGACGCATGCCTCGGGGCGGAAGCCCAAGGCGACCGGCAACATCGTAACATCCCGCACCCAATGAGGTTCATGTCGTGTGCCGAGGCACCCAATCCCACCCTACCATGCACGTTCTACCGCCATGTCGCCCGCCCTTCTCAGGCCCCCGTGAGGAGCCCTGAGGTTGGCACGCAGCACCGCAACATCCCGCACCTGACGAGGTTCATGTCGTGTGCCCAAAAGCATTTGGCCCCGCCCCATCATGCATGTTCTGCCGCCGCGCCGCCCGTCCTCCCCAGGCCTCCGGGTGGATGCCCGAGGACTACCAGCAACACCGCAACATCCCACGTCCGACAAGGTTCATGCCACACGCCTGAAGGCACCTGA

Coding sequence (CDS)

ATGATGACATTTTTGCATGTCATCACTCGACACGTCACTTGGGTGAGTAGTCGTGCGATTGTGGCGCCTCGACTCCCCAACTCAAGCACACGTCTCACAGCACGTCACCATTACCGATCCCACCCCACAACCGATGCAATGCCTGAGACCCAAGAATGCCCACCGCCGATGGTAGTGCAGCTCCCTTGGACCTCCGACGCATGCCTCGGGGCGGAAGCCCAAGGCGACCGGCAACATCGTAACATCCCGCACCCAATGAGGTTCATGTCGTGTGCCGAGGCACCCAATCCCACCCTACCATGCACGTTCTACCGCCATGTCGCCCGCCCTTCTCAGGCCCCCGTGAGGAGCCCTGAGGTTGGCACGCAGCACCGCAACATCCCGCACCTGACGAGGTTCATGTCGTGTGCCCAAAAGCATTTGGCCCCGCCCCATCATGCATGTTCTGCCGCCGCGCCGCCCGTCCTCCCCAGGCCTCCGGGTGGATGCCCGAGGACTACCAGCAACACCGCAACATCCCACGTCCGACAAGGTTCATGCCACACGCCTGAAGGCACCTGA

Protein sequence

MMTFLHVITRHVTWVSSRAIVAPRLPNSSTRLTARHHYRSHPTTDAMPETQECPPPMVVQLPWTSDACLGAEAQGDRQHRNIPHPMRFMSCAEAPNPTLPCTFYRHVARPSQAPVRSPEVGTQHRNIPHLTRFMSCAQKHLAPPHHACSAAAPPVLPRPPGGCPRTTSNTATSHVRQGSCHTPEGT

Homology

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BLAST of Lag0005408.1 vs. NCBI nr
Match: KAF5201798.1 (hypothetical protein FRX31_008615, partial [Thalictrum thalictroides])

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-05
Identity = 39/94 (41.49%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 93  EAPNPTLPCTFYRHVARPSQAPVRSPEVGTQHRNIPHLTRFMSCAQKHLAPPHHACSAAA 152
           +AP  T PC F+   +   Q+  +   V  QHRNIP  TR MS AQ+H  P    CS   
Sbjct: 102 KAPGSTPPCMFHHRTSNHPQSSHQRFPVRRQHRNIPCSTRLMSHAQRHPIPTSRTCSGTT 161

Query: 153 PPVLPRPPGGCPRTTSNTATSHVRQGSCHTPEGT 187
                    G P   S T TSH ++GSC TPEGT
Sbjct: 162 RLQNIGLAQGWP---SITTTSHTQRGSCRTPEGT 192

The following BLAST results are available for this feature:

BLAST of Lag0005408.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5201798.1	5.3e-05	41.49	hypothetical protein FRX31_008615, partial [Thalictrum thalictroides]	[more]

BLAST of Lag0005408.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..186

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0005408	Lag0005408	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0005408.1.exon1	Lag0005408.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0005408.1	cds.Lag0005408.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0005408.1	Lag0005408.1-protein	polypeptide