Lag0005071.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005071.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	stem-specific protein TSJT1-like
Location	chr6: 10202439 .. 10205132 (-)
Sequence length	522
RNA-Seq Expression	Lag0005071.1
Synteny	Lag0005071.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCGCTCTTCAATCTCACTCTCTACCCCTCAAAACCAATATGAACATGTGCTTCCTTCTCAAAATCAATTGTCAATAAGTGGAGTGACCCTGGTAGCTTATATATTGTGAGGTCTCCACCAATCTTTTCAATGTGGGATCCTCAACATTAATATGAACATGTGTCCTTGTTGACTTAAAGTTCTGGATCTAGCACTGTCGGGATAATTTACTTACAGACTAAGAAACCCACTTTTAGAAGAAAAAAAAAAGAGAAGATTTTTTCAACCAAATCAACACGATGACAAAAATGTATAACATGCACCAAAATCCGTATAAGACGAAAAAAAATCAAAGAAAAGTCAAGAAATCAATAAAAATAAGGACCCAGAGTTCCCTTTCACTTGCAGCAAATTGATCGGGTTTTTTGGAAACATAATATAAAAAATGAAAAAAATTAGAAAAAACAAATACTTTTGAAACTAATTGGAGAAATCAAGAAGAGGCGCGACATACTTTTTTTTTAATATATTTTTTATTTTTATATTACTTTGTCAAATCAATCGGTTTTCAACCCATCTTTTAAATTTATTTTATTTTATTTAGTGATTATTATAAATTCTTAATCATAACATAATGATTATGTTTTTGAATTTTAAAATTTGCAATTTTTTTTAATTAACCTTCTATAATTCCTTTAAATATAATTTTTTACATTTTCATATTTTCTAAATTTAAGAAAGTTATGAAAGGTTGGTTCTTCTTGCCTTGGATTAAACAAGCATTCTTTTTCAATTTCTAATATATTATATATATCCAAACATTTTATTTTCATATATATTATGAACTATTAATTATACATTAATGTTAATCAATAACTAAATAAATCATATCATTTTACTATTAATTCTTATCTTTACCTTCTTAATTTGATGTTTATACTAATTTATAAAGTATATGTGTGTATTATATACATTAAAAAAAACAAATTTTAATGGCTAAATTAAAAATGAGAATTATTTTTAAAAAAATTAAAGATGAGAATAAAATGTAGGTGCTACATGTTTATTTTAATAAGAAAAACAAAAAAGAGAATCTTATTAAGGTTTTTTTAAGAAATTTTTTCTTTCAAACATGATTGCATTAATAGTAAGTATTATAATTATAAGACATCAAAACCAAATAAACTTTAACTATATGCTACCATTGAAACTATAGTAAATTGAAACGTCTTTCTTGCTAGGGACATCCAACAATATATATTCATTATATATATTATTGAAAGCTTACTCAATTAATATCAAGTTATTCGTTAAAAAAATATTTTGTATCCTCTTTTGGATAGAAATATTCTCAATTCAACTTTTTTTTTATAAAAAAAAAGAAGTAATTTTCAAAATTGAAATTTCACATTTCAGTTTTAAAAAACAAAAGAAGAAATTGTTGTTATTAAGGAGCTGAATACGGTTGAGATATTTTATACGCCTCGGAGTAAAGACATGAGGGCGGATAGATTAGCGAAAAAGGCTCTTTATAAAAGATCATCTGGTTGTCAAATTTCCCGTTGTGGTTAGTGTCGATAGGTACTGAGACCCATTACAAGTGTTTATCAAATTGTAATTGTTATTAATTGAGTGGAAGCATTTTCTTCTAAAAAAAAAAGAAATTTAATTTTAAAATTCCTCGGTGGGTAAATGAAAACTGGTTATATATCAATAAGAAAATAAAAAATACAAATAAATAAATAATAATTTAAAAAATAAAAATAAGGGTAAAATACCCTTTTGGTCCCTCATGTTTTAGGATCGTTTCCAATAGGTCCCTAGGTTTGAAAATTGAACAATCAAGTCCCCACTGTTTAAAAAATACTTCTATTGAATCCCTGGACCGTTAATTTTTTTAACGGTGATGATGTGGCAGTTACGGTGCTGACGTGGCATATTTTTTAAAATTAAAATATTAATTTTTGAAATAAAATAATAATATATTAATATATTAAATAATAATAATAAGTTTTTTTTTAAAGAAAATAATCTTTCTCTCCCCCACCCACCCACCCACCCACCCACCCGAACCCCTTCTTCCCCTTTCCCTTTCTTTCTCTCTCCTTTCCCCCTCCCATGTCGTCGCCCATTTGAGCGGCAGCTTCGCCTTCATCCTCTTCGACACCTCCACCTCCACTCCCTTCGTCGCCTCTATTAGTTACTTTCCACTTCTACTTTCCGAAATCGGACTTACACAACATCGATTTCTGATCACCCTTTCTGTTGATCTTGGATTTTGCAGGGTCAGTTCGGGAAAGTGCCTCTGTATTGGGGAATCACCGCGGATGGATACGTCGCGTTCGCCGATGATGCTGGACTCCTCAAAGGCGCTTGTGGAAAATCACTCGCTTCGTTTCCTCAAGATATTTCGAAACCTAGGGATCGGTTTTCGTTGAATTCGGAAATTAGGGCACGAATTGATGCTGGATTGTTTGTTTGTTTCGATTTCAGGCTGTTTCTTCTCCACCGCCACCGCCGCCGATTTCCTCTTACCCAGATGCTACAGACCAACTGGATTCCCGCTGTCGCTGCCTTCCTTTCCTTCATCTTCTCTTCTTTCCCTCTCCTTCGTCATCTCTTCTCTCTCTCAACCCTCAAAACTCTGTTTTCTTCTTGTTCAGCTTCGACGGGTGCTTTGTTTCTTGAAGATGAAAATGGAACTTAG

mRNA sequence

ATGGCTTCTCGCTCTTCAATCTCACTCTCTACCCCTCAAAACCAATATGAACATGTGCTTCCTTCTCAAAATCAATTGTCAATAAGTGGAGTGACCCTGGGTCAGTTCGGGAAAGTGCCTCTGTATTGGGGAATCACCGCGGATGGATACGTCGCGTTCGCCGATGATGCTGGACTCCTCAAAGGCGCTTGTGGAAAATCACTCGCTTCGTTTCCTCAAGATATTTCGAAACCTAGGGATCGGTTTTCGTTGAATTCGGAAATTAGGGCACGAATTGATGCTGGATTGTTTGTTTGTTTCGATTTCAGGCTGTTTCTTCTCCACCGCCACCGCCGCCGATTTCCTCTTACCCAGATGCTACAGACCAACTGGATTCCCGCTGTCGCTGCCTTCCTTTCCTTCATCTTCTCTTCTTTCCCTCTCCTTCGTCATCTCTTCTCTCTCTCAACCCTCAAAACTCTGTTTTCTTCTTGTTCAGCTTCGACGGGTGCTTTGTTTCTTGAAGATGAAAATGGAACTTAG

Coding sequence (CDS)

ATGGCTTCTCGCTCTTCAATCTCACTCTCTACCCCTCAAAACCAATATGAACATGTGCTTCCTTCTCAAAATCAATTGTCAATAAGTGGAGTGACCCTGGGTCAGTTCGGGAAAGTGCCTCTGTATTGGGGAATCACCGCGGATGGATACGTCGCGTTCGCCGATGATGCTGGACTCCTCAAAGGCGCTTGTGGAAAATCACTCGCTTCGTTTCCTCAAGATATTTCGAAACCTAGGGATCGGTTTTCGTTGAATTCGGAAATTAGGGCACGAATTGATGCTGGATTGTTTGTTTGTTTCGATTTCAGGCTGTTTCTTCTCCACCGCCACCGCCGCCGATTTCCTCTTACCCAGATGCTACAGACCAACTGGATTCCCGCTGTCGCTGCCTTCCTTTCCTTCATCTTCTCTTCTTTCCCTCTCCTTCGTCATCTCTTCTCTCTCTCAACCCTCAAAACTCTGTTTTCTTCTTGTTCAGCTTCGACGGGTGCTTTGTTTCTTGAAGATGAAAATGGAACTTAG

Protein sequence

MASRSSISLSTPQNQYEHVLPSQNQLSISGVTLGQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQDISKPRDRFSLNSEIRARIDAGLFVCFDFRLFLLHRHRRRFPLTQMLQTNWIPAVAAFLSFIFSSFPLLRHLFSLSTLKTLFSSCSASTGALFLEDENGT

Homology

[Close]

BLAST of Lag0005071.1 vs. NCBI nr
Match: XP_022959386.1 (stem-specific protein TSJT1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 49/72 (68.06%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 24  NQLSISGVTLGQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQDISK------ 83
           N  S   V   QFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ ISK      
Sbjct: 139 NSTSTLFVASDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQGISKLGAIFR 198

Query: 84  PRDRFSLNSEIR 90
            R+R   N + R
Sbjct: 199 EREREKANGQSR 210

[Close]

BLAST of Lag0005071.1 vs. NCBI nr
Match: XP_023006444.1 (stem-specific protein TSJT1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-14
Identity = 48/72 (66.67%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 24  NQLSISGVTLGQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQDISK------ 83
           N  S   V   QFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ  SK      
Sbjct: 139 NSTSTLFVASDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQGTSKLGAIFR 198

Query: 84  PRDRFSLNSEIR 90
            R+R   N + R
Sbjct: 199 EREREKANGQSR 210

[Close]

BLAST of Lag0005071.1 vs. NCBI nr
Match: XP_023006443.1 (stem-specific protein TSJT1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 24  NQLSISGVTLGQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ 74
           N  S   V   QFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ
Sbjct: 139 NSTSTLFVASDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ 188

[Close]

BLAST of Lag0005071.1 vs. NCBI nr
Match: XP_022959387.1 (stem-specific protein TSJT1-like isoform X2 [Cucurbita moschata] >KAG6575011.1 Stem-specific protein TSJT1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013582.1 Stem-specific protein TSJT1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 24  NQLSISGVTLGQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ 74
           N  S   V   QFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ
Sbjct: 139 NSTSTLFVASDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ 188

[Close]

BLAST of Lag0005071.1 vs. NCBI nr
Match: XP_023548563.1 (stem-specific protein TSJT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 24  NQLSISGVTLGQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ 74
           N  S   V   QFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ
Sbjct: 139 NSTSTLFVASDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQ 188

The following BLAST results are available for this feature:

BLAST of Lag0005071.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959386.1	3.1e-15	68.06	stem-specific protein TSJT1-like isoform X1 [Cucurbita moschata]	[more]
XP_023006444.1	1.2e-14	66.67	stem-specific protein TSJT1-like isoform X2 [Cucurbita maxima]	[more]
XP_023006443.1	1.3e-13	84.00	stem-specific protein TSJT1-like isoform X1 [Cucurbita maxima]	[more]
XP_022959387.1	1.3e-13	84.00	stem-specific protein TSJT1-like isoform X2 [Cucurbita moschata] >KAG6575011.1 S...	[more]
XP_023548563.1	1.3e-13	84.00	stem-specific protein TSJT1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0005071.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024286	Domain of unknown function DUF3700	PFAM	PF12481	DUF3700	coord: 32..74 e-value: 1.3E-12 score: 47.7
None	No IPR available	PANTHER	PTHR45952:SF10	ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIF PROTEIN	coord: 31..74
IPR044828	Stem-specific protein TSJT1-like	PANTHER	PTHR45952	ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS	coord: 31..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0005071	Lag0005071	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0005071.1.exon2	Lag0005071.1.exon2	exon
Lag0005071.1.exon1	Lag0005071.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0005071.1	cds.Lag0005071.1_2	CDS
cds.Lag0005071.1	cds.Lag0005071.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0005071.1	Lag0005071.1-protein	polypeptide