Lag0004608.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0004608.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 5418123 .. 5419327 (-)
Sequence length468
RNA-Seq ExpressionLag0004608.1
SyntenyLag0004608.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAAAAGCAATACGAGGAAGAAGGAAAACCCCAAGACAAGTAATTTTCTCATCTGGTTTTTCTTTCCATCTTCATTCCTTAAGAATACCATTGTCGCGATCTGTTGGGTCAATTTTAGATTTAGGCTTCTTGGAAACGAAGGCGGGAACTGATTCTATCTTCTATTCCATCGAGACTCATCTCTTTCTTCAAGCAAAAATCTATGAAGATACTCTTCTTCCCATTTCATTTTCCCTTTTCACACATATATATGAATCTACAATGTCCCAGATGGAGGAATATGCGAGTTTTCCCGTTTGTTCCACGCATTTTCCGGGGAAAGTAGGGATCCTTTCCACTTTCAACTCTGCTGCAAGAGACAAATGCCGCGCTTGCTTCATGGGACGCTTCATGCCAATATATTTGGAATCGACAGGCTTCAAACTGGATTTCCTGTTTTCTGCGGGAAGGTGTGGTTCTGAAACCGAATCTATCAACAAGTTCAATCGATTCTATTTCATAGAATGTAATTGAAAGATATTATTCTTGTCTGGAACCAAGCTTAAGAAATAGATTATTAAATTGAAAATGGAATTGTTTAAAGATGATATGAGTATTGTCCTTTAAGAAACACTTTTAATGAAAAGAATAGATTATCATGTTAACTTTCTTTATGCTAAAAAGTGCCTTGGTCAAATAACATTCTCCTCAATGTTTTTGGAAGAGAAAATGGTTTTAGTGAAAAGAATGACTTGGATTAAAATAAATAAGAGTAAAAGAGAAGGATATTCAGTCTCTAGGTTTCCAAACGAATTGAATTCCTGTCAACTCTATTGGAAATTACGAGAGCTTGAACCTTTGTATCGAATTCTTACTTTCCAAAGCCTAATCAAGCTAGTGAATGTTTGGCAGTTTTCATGAACTAATCTATGTATTTTGCTTGCTTTGGATGCCATAAGGGCGTTGTTATGTTATTTAAGGTGATGGCTTCATAGTGTATTCCAATCCTGTGCATAATAAGTTTGCAGAGCCTAGACATCCCTGAACGATGAGAATTTGTTCTAAACTTTGGTTTAGAAGGATTTGACAAGACATTTTGATCTGCATTTTTATGCGTTAAAGTCCATCAAGAACCTTAATTTTACAAAATTGTGTTCAATACATTATATGCTGTCTGTCTCTAACTGAGGTGAATTTGTCATTGCAGGATAAGAGGGTAA

mRNA sequence

ATGGCGGCAAAAGCAATACGAGGAAGAAGGAAAACCCCAAGACAAGTAATTTTCTCATCTGGTTTTTCTTTCCATCTTCATTCCTTAAGAATACCATTGTCGCGATCTGTTGGGTCAATTTTAGATTTAGGCTTCTTGGAAACGAAGGCGGGAACTGATTCTATCTTCTATTCCATCGAGACTCATCTCTTTCTTCAAGCAAAAATCTATGAAGATACTCTTCTTCCCATTTCATTTTCCCTTTTCACACATATATATGAATCTACAATGTCCCAGATGGAGGAATATGCGAGTTTTCCCGTTTGTTCCACGCATTTTCCGGGGAAAGTAGGGATCCTTTCCACTTTCAACTCTGCTGCAAGAGACAAATGCCGCGCTTGCTTCATGGGACGCTTCATGCCAATATATTTGGAATCGACAGGCTTCAAACTGGATTTCCTGTTTTCTGCGGGAAGGATAAGAGGGTAA

Coding sequence (CDS)

ATGGCGGCAAAAGCAATACGAGGAAGAAGGAAAACCCCAAGACAAGTAATTTTCTCATCTGGTTTTTCTTTCCATCTTCATTCCTTAAGAATACCATTGTCGCGATCTGTTGGGTCAATTTTAGATTTAGGCTTCTTGGAAACGAAGGCGGGAACTGATTCTATCTTCTATTCCATCGAGACTCATCTCTTTCTTCAAGCAAAAATCTATGAAGATACTCTTCTTCCCATTTCATTTTCCCTTTTCACACATATATATGAATCTACAATGTCCCAGATGGAGGAATATGCGAGTTTTCCCGTTTGTTCCACGCATTTTCCGGGGAAAGTAGGGATCCTTTCCACTTTCAACTCTGCTGCAAGAGACAAATGCCGCGCTTGCTTCATGGGACGCTTCATGCCAATATATTTGGAATCGACAGGCTTCAAACTGGATTTCCTGTTTTCTGCGGGAAGGATAAGAGGGTAA

Protein sequence

MAAKAIRGRRKTPRQVIFSSGFSFHLHSLRIPLSRSVGSILDLGFLETKAGTDSIFYSIETHLFLQAKIYEDTLLPISFSLFTHIYESTMSQMEEYASFPVCSTHFPGKVGILSTFNSAARDKCRACFMGRFMPIYLESTGFKLDFLFSAGRIRG
Homology
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BLAST of Lag0004608.1 vs. NCBI nr
Match: KAG7029509.1 (RNA-dependent RNA polymerase 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 109  KVGILSTFNSAARDKCRACFMGRFMPIYLESTGFKLDFLFSAGRI 154
            KV IL + NSAARDKCRACFMGRF PIY+EST F+LD LFSAGR+
Sbjct: 1198 KVRILFSLNSAARDKCRACFMGRFKPIYMESTSFELDVLFSAGRV 1242

The following BLAST results are available for this feature:
BLAST of Lag0004608.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029509.11.2e-1077.78RNA-dependent RNA polymerase 6, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
BLAST of Lag0004608.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0004608Lag0004608gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0004608.1.exon2Lag0004608.1.exon2exon
Lag0004608.1.exon1Lag0004608.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0004608.1cds.Lag0004608.1_2CDS
cds.Lag0004608.1cds.Lag0004608.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0004608.1Lag0004608.1-proteinpolypeptide