Sequences
The following sequences are available for this feature:
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCCTATGTTATCTAATGGTTTCTAGTGCTCGTGAAATGAGTGTTAAGAGTACCAATAGCGTGGTTGTTTCTCATGGTCATGAAGCTACTAAGAATAGTGACGATGCTAGTGTATCTCATGGCCTTGAAGCTACTAAGAACGGTAGTGGTAGCATGTTTGTTTCTCATAGTATGGAAACCACCAAGAACAACAGTAGCACTGTTGTTTCTCATGGTCATGGAACTAGCAAGAATAGCGGCGTCACATTGTTTTCTCATGGTGTCCAAACTACCACGAGTCATAGTAGTTCTTTTGTGTCTCATGGAGGTTTTGATGGTCTACATCACCACCTGATTAGCTTTGATTGA
ATGGAAGTCCTATGTTATCTAATGGTTTCTAGTGCTCGTGAAATGAGTGTTAAGAGTACCAATAGCGTGGTTGTTTCTCATGGTCATGAAGCTACTAAGAATAGTGACGATGCTAGTGTATCTCATGGCCTTGAAGCTACTAAGAACGGTAGTGGTAGCATGTTTGTTTCTCATAGTATGGAAACCACCAAGAACAACAGTAGCACTGTTGTTTCTCATGGTCATGGAACTAGCAAGAATAGCGGCGTCACATTGTTTTCTCATGGTGTCCAAACTACCACGAGTCATAGTAGTTCTTTTGTGTCTCATGGAGGTTTTGATGGTCTACATCACCACCTGATTAGCTTTGATTGA
ATGGAAGTCCTATGTTATCTAATGGTTTCTAGTGCTCGTGAAATGAGTGTTAAGAGTACCAATAGCGTGGTTGTTTCTCATGGTCATGAAGCTACTAAGAATAGTGACGATGCTAGTGTATCTCATGGCCTTGAAGCTACTAAGAACGGTAGTGGTAGCATGTTTGTTTCTCATAGTATGGAAACCACCAAGAACAACAGTAGCACTGTTGTTTCTCATGGTCATGGAACTAGCAAGAATAGCGGCGTCACATTGTTTTCTCATGGTGTCCAAACTACCACGAGTCATAGTAGTTCTTTTGTGTCTCATGGAGGTTTTGATGGTCTACATCACCACCTGATTAGCTTTGATTGA
MEVLCYLMVSSAREMSVKSTNSVVVSHGHEATKNSDDASVSHGLEATKNGSGSMFVSHSMETTKNNSSTVVSHGHGTSKNSGVTLFSHGVQTTTSHSSSFVSHGGFDGLHHHLISFD
Homology
BLAST of Lag0002588.1 vs. NCBI nr
Match:
KAA0048668.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat protein [Cucumis melo var. makuwa])
HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0048668.1 2.2e-04 43.69 Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18166.1 Ankyrin repeat pro... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G A A G T C C T A T G T T A T C T A A T G G T T T C T A G T G C T C G T G A A A T G A G T G T T A A G A G T A C C A A T A G C G T G G T T G T T T C T C A T G G T C A T G A A G C T A C T A A G A A T A G T G A C G A T G C T A G T G T A T C T C A T G G C C T T G A A G C T A C T A A G A A C G G T A G T G G T A G C A T G T T T G T T T C T C A T A G T A T G G A A A C C A C C A A G A A C A A C A G T A G C A C T G T T G T T T C T C A T G G T C A T G G A A C T A G C A A G A A T A G C G G C G T C A C A T T G T T T T C T C A T G G T G T C C A A A C T A C C A C G A G T C A T A G T A G T T C T T T T G T G T C T C A T G G A G G T T T T G A T G G T C T A C A T C A C C A C C T G A T T A G C T T T G A T T G A 50 100 150 200 250 300 350 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 26..78 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 37..78
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
Lag0002588 Lag0002588 gene
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Lag0002588.1.exon1 Lag0002588.1.exon1 exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
cds.Lag0002588.1 cds.Lag0002588.1 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
Lag0002588.1 Lag0002588.1-protein polypeptide
